Wall clock time and date at job start Sat Apr 11 2020 06:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35661 * 116.99753 * 2 1 4 4 C 1.38705 * 120.15025 * 359.97438 * 3 2 1 5 5 C 1.38053 * 120.08402 * 179.97438 * 4 3 2 6 6 C 1.38550 * 120.39170 * 0.03380 * 5 4 3 7 7 S 1.76198 * 119.84980 * 180.02562 * 6 5 4 8 8 C 1.81402 * 104.44947 * 89.99543 * 7 6 5 9 9 O 1.42095 * 104.27411 * 206.06701 * 7 6 5 10 10 O 1.42097 * 104.27594 * 333.92629 * 7 6 5 11 11 C 1.37789 * 120.29874 * 359.97438 * 6 5 4 12 12 C 1.39712 * 119.90562 * 359.72840 * 11 6 5 13 13 C 1.47536 * 120.18806 * 180.29216 * 12 11 6 14 14 O 1.21597 * 119.99550 * 130.76830 * 13 12 11 15 15 N 1.34774 * 120.00146 * 310.77069 * 13 12 11 16 16 C 1.46495 * 120.00092 * 4.45387 * 15 13 12 17 17 C 1.46508 * 119.99698 * 184.45277 * 15 13 12 18 18 H 1.09004 * 109.47108 * 0.02562 * 17 15 13 19 19 C 1.53000 * 109.46771 * 119.99854 * 17 15 13 20 20 C 1.50699 * 109.46960 * 239.99673 * 17 15 13 21 21 H 1.08000 * 120.00115 * 0.02562 * 20 17 15 22 22 C 1.37877 * 119.99641 * 179.97438 * 20 17 15 23 23 N 1.31517 * 119.99817 * 179.97438 * 22 20 17 24 24 Si 1.86795 * 120.00248 * 0.02562 * 22 20 17 25 25 H 1.48499 * 109.47292 * 89.99755 * 24 22 20 26 26 H 1.48506 * 109.46980 * 209.99799 * 24 22 20 27 27 H 1.48496 * 109.46864 * 329.99502 * 24 22 20 28 28 H 1.09000 * 109.47040 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47369 * 299.99639 * 1 2 3 30 30 H 1.08996 * 109.47619 * 60.00302 * 1 2 3 31 31 H 1.08002 * 119.95945 * 359.97438 * 4 3 2 32 32 H 1.08005 * 119.80336 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.46863 * 60.00191 * 8 7 6 34 34 H 1.09003 * 109.47029 * 179.97438 * 8 7 6 35 35 H 1.08992 * 109.47457 * 299.99789 * 8 7 6 36 36 H 1.07995 * 120.04338 * 180.02562 * 11 6 5 37 37 H 1.08996 * 109.47051 * 93.10999 * 16 15 13 38 38 H 1.09000 * 109.46732 * 213.10709 * 16 15 13 39 39 H 1.08998 * 109.47342 * 333.10496 * 16 15 13 40 40 H 1.08991 * 109.47374 * 299.99639 * 19 17 15 41 41 H 1.09004 * 109.46993 * 60.00311 * 19 17 15 42 42 H 1.09002 * 109.46648 * 180.02562 * 19 17 15 43 43 H 0.96996 * 120.00411 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 1.2924 2.3740 -0.0005 5 6 1.9205 3.6034 0.0000 6 6 3.3036 3.6838 0.0004 7 16 4.0904 5.2603 0.0017 8 6 4.2920 5.6641 1.7587 9 8 5.3538 5.0219 -0.6033 10 8 3.1403 6.1267 -0.6031 11 6 4.0667 2.5365 0.0007 12 6 3.4440 1.2858 0.0065 13 6 4.2550 0.0533 0.0134 14 8 4.0139 -0.8285 0.8152 15 7 5.2629 -0.0951 -0.8689 16 6 5.6163 1.0052 -1.7692 17 6 6.0051 -1.3569 -0.9276 18 1 5.6020 -2.0503 -0.1893 19 6 5.8684 -1.9644 -2.3251 20 6 7.4601 -1.0980 -0.6325 21 1 7.7980 -0.0941 -0.4219 22 6 8.3595 -2.1430 -0.6304 23 7 9.6294 -1.9170 -0.3733 24 14 7.7749 -3.8794 -0.9939 25 1 7.8606 -4.1351 -2.4543 26 1 8.6321 -4.8521 -0.2699 27 1 6.3671 -4.0315 -0.5466 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2137 2.3195 -0.0014 32 1 1.3301 4.5078 0.0000 33 1 4.9066 4.9022 2.2384 34 1 4.7773 6.6354 1.8550 35 1 3.3140 5.6971 2.2385 36 1 5.1445 2.6040 0.0014 37 1 6.4072 1.6042 -1.3178 38 1 5.9649 0.5997 -2.7190 39 1 4.7400 1.6302 -1.9406 40 1 4.8161 -2.1517 -2.5385 41 1 6.2712 -1.2712 -3.0636 42 1 6.4202 -2.9034 -2.3686 43 1 10.2623 -2.6520 -0.3722 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344600776.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:57 Heat of formation + Delta-G solvation = -88.582553 kcal Electronic energy + Delta-G solvation = -28509.377922 eV Core-core repulsion = 24455.942455 eV Total energy + Delta-G solvation = -4053.435467 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.75381 -38.89017 -37.58898 -37.24702 -36.07422 -35.48780 -32.94858 -31.69224 -30.80988 -29.98138 -29.70299 -27.64814 -26.33213 -25.14407 -24.15024 -22.83202 -21.56210 -19.49629 -18.85268 -18.00401 -17.48691 -16.92712 -16.82388 -16.38787 -16.10344 -15.89903 -15.69523 -15.49169 -14.91978 -14.52211 -14.26035 -13.79427 -13.68814 -13.43079 -13.37950 -13.18458 -12.97337 -12.85182 -12.52612 -12.23851 -12.22503 -12.14583 -12.04628 -11.78278 -11.71382 -11.54046 -11.36899 -11.26862 -11.12757 -10.95122 -10.65428 -10.11602 -9.67142 -9.34768 -9.31719 -9.09256 -8.75369 -8.60769 -7.72351 -6.11776 -4.12304 -0.12327 0.65783 0.86636 2.65499 2.89249 2.97546 3.25309 3.38442 3.41009 3.44481 3.69516 3.78287 3.95759 4.37447 4.37674 4.51321 4.52825 4.67023 4.79669 4.87636 4.92990 5.03249 5.21343 5.22643 5.23735 5.38741 5.51678 5.59829 5.70635 5.74458 5.85087 6.04009 6.23817 6.29440 6.32951 6.37399 6.50652 6.85814 6.99521 7.14784 7.33428 7.64138 8.15938 8.47876 8.83086 8.91351 9.48905 11.00909 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012490 B = 0.003976 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.323658 B = 7040.214901 C = 8692.848989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.288 6.288 3 C 0.223 3.777 4 C -0.236 4.236 5 C 0.028 3.972 6 C -0.707 4.707 7 S 2.505 3.495 8 C -0.652 4.652 9 O -0.931 6.931 10 O -0.942 6.942 11 C 0.045 3.955 12 C -0.167 4.167 13 C 0.555 3.445 14 O -0.534 6.534 15 N -0.579 5.579 16 C 0.077 3.923 17 C 0.230 3.770 18 H 0.064 0.936 19 C -0.162 4.162 20 C -0.526 4.526 21 H 0.081 0.919 22 C 0.076 3.924 23 N -0.894 5.894 24 Si 0.882 3.118 25 H -0.277 1.277 26 H -0.294 1.294 27 H -0.263 1.263 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.158 0.842 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.033 0.967 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.580 14.108 1.459 23.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.198 6.198 3 C 0.173 3.827 4 C -0.256 4.256 5 C 0.009 3.991 6 C -0.794 4.794 7 S 2.684 3.316 8 C -0.802 4.802 9 O -0.928 6.928 10 O -0.939 6.939 11 C 0.025 3.975 12 C -0.172 4.172 13 C 0.341 3.659 14 O -0.412 6.412 15 N -0.310 5.310 16 C -0.067 4.067 17 C 0.129 3.871 18 H 0.081 0.919 19 C -0.220 4.220 20 C -0.565 4.565 21 H 0.099 0.901 22 C -0.127 4.127 23 N -0.532 5.532 24 Si 0.712 3.288 25 H -0.204 1.204 26 H -0.221 1.221 27 H -0.188 1.188 28 H 0.124 0.876 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.159 0.841 32 H 0.164 0.836 33 H 0.153 0.847 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.175 0.825 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.052 0.948 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.185 13.790 1.171 22.852 hybrid contribution -0.658 -1.381 0.359 1.571 sum -18.842 12.409 1.530 22.613 Atomic orbital electron populations 1.23227 0.77877 1.04749 1.01511 1.86292 1.21682 1.25942 1.85873 1.19251 0.91044 0.84803 0.87555 1.21270 1.00527 0.91840 1.11942 1.20752 0.92192 0.98083 0.88091 1.30314 1.04486 1.20388 1.24236 1.05016 0.74671 0.74209 0.77658 1.30246 1.12111 1.12440 1.25367 1.93624 1.41546 1.84576 1.73047 1.93566 1.62444 1.64548 1.73362 1.21120 1.00740 0.89244 0.86375 1.19590 0.91095 0.95268 1.11248 1.17803 0.80559 0.85727 0.81834 1.90759 1.69690 1.42462 1.38279 1.47814 1.31799 1.16278 1.35089 1.21856 0.99890 0.89804 0.95106 1.19330 0.92554 0.81427 0.93813 0.91864 1.22465 0.98807 1.00581 1.00134 1.21154 0.89586 0.96930 1.48806 0.90145 1.24852 0.94672 0.98721 0.94419 1.69873 1.02108 1.32354 1.48842 0.86930 0.79165 0.84768 0.77911 1.20401 1.22149 1.18836 0.87646 0.92128 0.92220 0.84052 0.83642 0.84677 0.85069 0.85112 0.82484 0.91860 0.90651 0.92378 0.94805 0.92387 0.93047 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.29 -4.21 9.56 -27.45 -0.26 -4.48 16 3 C 0.22 3.18 6.68 -38.70 -0.26 2.92 16 4 C -0.24 -2.45 9.03 -39.48 -0.36 -2.81 16 5 C 0.03 0.27 9.45 -39.53 -0.37 -0.10 16 6 C -0.71 -7.77 5.65 -39.63 -0.22 -8.00 16 7 S 2.51 23.40 5.79 -107.50 -0.62 22.77 16 8 C -0.65 -3.54 10.80 101.05 1.09 -2.45 16 9 O -0.93 -12.23 17.11 -57.54 -0.98 -13.22 16 10 O -0.94 -10.75 17.11 -57.54 -0.98 -11.74 16 11 C 0.04 0.62 7.03 -39.20 -0.28 0.35 16 12 C -0.17 -2.77 4.90 -104.84 -0.51 -3.29 16 13 C 0.55 11.77 6.94 -12.47 -0.09 11.69 16 14 O -0.53 -13.22 15.89 -3.49 -0.06 -13.28 16 15 N -0.58 -12.49 2.75 -176.49 -0.49 -12.97 16 16 C 0.08 1.37 8.36 59.84 0.50 1.87 16 17 C 0.23 5.69 2.23 -69.08 -0.15 5.54 16 18 H 0.06 1.73 5.96 -51.93 -0.31 1.42 16 19 C -0.16 -3.57 8.65 37.16 0.32 -3.25 16 20 C -0.53 -14.73 8.95 -34.44 -0.31 -15.03 16 21 H 0.08 2.41 7.81 -52.49 -0.41 2.00 16 22 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 23 N -0.89 -27.07 13.96 55.43 0.77 -26.30 16 24 Si 0.88 22.02 24.37 -169.99 -4.14 17.88 16 25 H -0.28 -6.61 6.87 56.52 0.39 -6.22 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.26 -6.51 6.53 56.52 0.37 -6.14 16 28 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 30 H 0.06 0.39 7.66 -51.93 -0.40 0.00 16 31 H 0.14 1.00 6.30 -52.49 -0.33 0.67 16 32 H 0.15 0.99 7.55 -52.48 -0.40 0.59 16 33 H 0.13 0.68 8.14 -51.92 -0.42 0.26 16 34 H 0.13 0.50 8.14 -51.92 -0.42 0.08 16 35 H 0.13 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.16 2.18 6.08 -52.49 -0.32 1.86 16 37 H 0.06 1.13 7.48 -51.93 -0.39 0.74 16 38 H 0.07 1.30 6.44 -51.93 -0.33 0.97 16 39 H 0.06 0.88 5.67 -51.93 -0.29 0.59 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 1.19 6.68 -51.93 -0.35 0.84 16 42 H 0.05 1.17 3.27 -51.93 -0.17 1.00 16 43 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 358.54 15.07 5.40 5.40 Total: -1.00 -39.19 358.54 -6.49 -45.69 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -5.39 Total: -0.45 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: 0.26 Total: -9.31 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.29 Total: -39.27 kcal Atomic # 8 Polarization: -40.42 SS G_CDS: -2.29 Total: -42.71 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.14 Total: 17.88 kcal Atomic # 16 Polarization: 23.40 SS G_CDS: -0.62 Total: 22.77 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -39.19 -6.49 -45.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344600776.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.895 kcal (2) G-P(sol) polarization free energy of solvation -39.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds