Wall clock time and date at job start Sat Apr 11 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35661 * 116.99753 * 2 1 4 4 C 1.38705 * 120.15025 * 359.97438 * 3 2 1 5 5 C 1.38053 * 120.08402 * 179.97438 * 4 3 2 6 6 C 1.38550 * 120.39170 * 0.03380 * 5 4 3 7 7 S 1.76198 * 119.84980 * 180.02562 * 6 5 4 8 8 C 1.81402 * 104.44947 * 89.99543 * 7 6 5 9 9 O 1.42095 * 104.27411 * 206.06701 * 7 6 5 10 10 O 1.42097 * 104.27594 * 333.92629 * 7 6 5 11 11 C 1.37789 * 120.29874 * 359.97438 * 6 5 4 12 12 C 1.39712 * 119.90562 * 359.72840 * 11 6 5 13 13 C 1.47536 * 120.18806 * 180.29216 * 12 11 6 14 14 O 1.21597 * 119.99550 * 130.76830 * 13 12 11 15 15 N 1.34774 * 120.00146 * 310.77069 * 13 12 11 16 16 C 1.46495 * 120.00092 * 4.45387 * 15 13 12 17 17 C 1.46508 * 119.99698 * 184.45277 * 15 13 12 18 18 H 1.09004 * 109.47108 * 0.02562 * 17 15 13 19 19 C 1.53000 * 109.46771 * 119.99854 * 17 15 13 20 20 C 1.50699 * 109.46960 * 239.99673 * 17 15 13 21 21 H 1.08000 * 120.00115 * 0.02562 * 20 17 15 22 22 C 1.37877 * 119.99641 * 179.97438 * 20 17 15 23 23 N 1.31517 * 119.99817 * 179.97438 * 22 20 17 24 24 Si 1.86795 * 120.00248 * 0.02562 * 22 20 17 25 25 H 1.48499 * 109.47292 * 89.99755 * 24 22 20 26 26 H 1.48506 * 109.46980 * 209.99799 * 24 22 20 27 27 H 1.48496 * 109.46864 * 329.99502 * 24 22 20 28 28 H 1.09000 * 109.47040 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47369 * 299.99639 * 1 2 3 30 30 H 1.08996 * 109.47619 * 60.00302 * 1 2 3 31 31 H 1.08002 * 119.95945 * 359.97438 * 4 3 2 32 32 H 1.08005 * 119.80336 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.46863 * 60.00191 * 8 7 6 34 34 H 1.09003 * 109.47029 * 179.97438 * 8 7 6 35 35 H 1.08992 * 109.47457 * 299.99789 * 8 7 6 36 36 H 1.07995 * 120.04338 * 180.02562 * 11 6 5 37 37 H 1.08996 * 109.47051 * 93.10999 * 16 15 13 38 38 H 1.09000 * 109.46732 * 213.10709 * 16 15 13 39 39 H 1.08998 * 109.47342 * 333.10496 * 16 15 13 40 40 H 1.08991 * 109.47374 * 299.99639 * 19 17 15 41 41 H 1.09004 * 109.46993 * 60.00311 * 19 17 15 42 42 H 1.09002 * 109.46648 * 180.02562 * 19 17 15 43 43 H 0.96996 * 120.00411 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 1.2924 2.3740 -0.0005 5 6 1.9205 3.6034 0.0000 6 6 3.3036 3.6838 0.0004 7 16 4.0904 5.2603 0.0017 8 6 4.2920 5.6641 1.7587 9 8 5.3538 5.0219 -0.6033 10 8 3.1403 6.1267 -0.6031 11 6 4.0667 2.5365 0.0007 12 6 3.4440 1.2858 0.0065 13 6 4.2550 0.0533 0.0134 14 8 4.0139 -0.8285 0.8152 15 7 5.2629 -0.0951 -0.8689 16 6 5.6163 1.0052 -1.7692 17 6 6.0051 -1.3569 -0.9276 18 1 5.6020 -2.0503 -0.1893 19 6 5.8684 -1.9644 -2.3251 20 6 7.4601 -1.0980 -0.6325 21 1 7.7980 -0.0941 -0.4219 22 6 8.3595 -2.1430 -0.6304 23 7 9.6294 -1.9170 -0.3733 24 14 7.7749 -3.8794 -0.9939 25 1 7.8606 -4.1351 -2.4543 26 1 8.6321 -4.8521 -0.2699 27 1 6.3671 -4.0315 -0.5466 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2137 2.3195 -0.0014 32 1 1.3301 4.5078 0.0000 33 1 4.9066 4.9022 2.2384 34 1 4.7773 6.6354 1.8550 35 1 3.3140 5.6971 2.2385 36 1 5.1445 2.6040 0.0014 37 1 6.4072 1.6042 -1.3178 38 1 5.9649 0.5997 -2.7190 39 1 4.7400 1.6302 -1.9406 40 1 4.8161 -2.1517 -2.5385 41 1 6.2712 -1.2712 -3.0636 42 1 6.4202 -2.9034 -2.3686 43 1 10.2623 -2.6520 -0.3722 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344600776.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:56 Heat of formation + Delta-G solvation = -120.046759 kcal Electronic energy + Delta-G solvation = -28510.742312 eV Core-core repulsion = 24455.942455 eV Total energy + Delta-G solvation = -4054.799857 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.87051 -40.31795 -38.58968 -38.08599 -37.29889 -36.91426 -34.87295 -33.19619 -31.70983 -31.55837 -30.19983 -28.37753 -27.89062 -27.19704 -25.43182 -23.73832 -23.05699 -20.90515 -19.75089 -19.16886 -18.91658 -18.40599 -18.06094 -17.49107 -17.24857 -17.07058 -16.87080 -16.52681 -16.40396 -15.72959 -15.56703 -15.06302 -14.84711 -14.60670 -14.40974 -14.18564 -14.04596 -13.98488 -13.87831 -13.77824 -13.55053 -13.27489 -13.09248 -13.07756 -13.05671 -12.90621 -12.59829 -12.38267 -12.29983 -12.08143 -12.04164 -11.71399 -11.60640 -11.39244 -10.85840 -10.80644 -10.22030 -9.75859 -9.47884 -8.35852 -6.40915 -0.82090 -0.28428 -0.11963 1.24769 1.34062 1.43212 1.60740 1.94075 2.07034 2.14831 2.26654 2.34723 2.98511 3.05089 3.17239 3.44479 3.62167 3.82469 4.01735 4.15501 4.16657 4.23492 4.27643 4.34293 4.39251 4.40841 4.48979 4.53940 4.58186 4.63610 4.65123 4.70250 4.86813 4.88119 4.95261 5.01628 5.01967 5.27431 5.43702 5.44414 5.64379 6.14365 6.20107 6.57589 6.63011 7.14247 7.28486 8.80239 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012490 B = 0.003976 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.323658 B = 7040.214901 C = 8692.848989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.327 6.327 3 C 0.212 3.788 4 C -0.222 4.222 5 C 0.040 3.960 6 C -0.703 4.703 7 S 2.514 3.486 8 C -0.630 4.630 9 O -0.978 6.978 10 O -0.962 6.962 11 C 0.037 3.963 12 C -0.202 4.202 13 C 0.550 3.450 14 O -0.583 6.583 15 N -0.589 5.589 16 C 0.078 3.922 17 C 0.232 3.768 18 H 0.033 0.967 19 C -0.154 4.154 20 C -0.528 4.528 21 H 0.045 0.955 22 C 0.025 3.975 23 N -0.937 5.937 24 Si 0.941 3.059 25 H -0.252 1.252 26 H -0.293 1.293 27 H -0.263 1.263 28 H 0.112 0.888 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.182 0.818 32 H 0.185 0.815 33 H 0.141 0.859 34 H 0.155 0.845 35 H 0.161 0.839 36 H 0.145 0.855 37 H 0.054 0.946 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.046 0.954 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.765 15.857 1.249 26.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.238 6.238 3 C 0.163 3.837 4 C -0.241 4.241 5 C 0.021 3.979 6 C -0.788 4.788 7 S 2.696 3.304 8 C -0.784 4.784 9 O -0.975 6.975 10 O -0.959 6.959 11 C 0.017 3.983 12 C -0.207 4.207 13 C 0.339 3.661 14 O -0.464 6.464 15 N -0.318 5.318 16 C -0.064 4.064 17 C 0.129 3.871 18 H 0.051 0.949 19 C -0.212 4.212 20 C -0.567 4.567 21 H 0.064 0.936 22 C -0.174 4.174 23 N -0.576 5.576 24 Si 0.768 3.232 25 H -0.177 1.177 26 H -0.220 1.220 27 H -0.188 1.188 28 H 0.130 0.870 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.199 0.801 32 H 0.202 0.798 33 H 0.160 0.840 34 H 0.173 0.827 35 H 0.180 0.820 36 H 0.163 0.837 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.065 0.935 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.398 15.547 0.892 26.464 hybrid contribution 0.265 -1.745 0.551 1.849 sum -21.133 13.801 1.442 25.281 Atomic orbital electron populations 1.23593 0.75040 1.06099 1.03642 1.86242 1.24803 1.26811 1.85962 1.19429 0.90338 0.86099 0.87873 1.21676 1.02231 0.90357 1.09864 1.21296 0.91713 0.99357 0.85518 1.30563 1.05306 1.19916 1.23042 1.04731 0.73167 0.73019 0.79499 1.30088 1.14488 1.13771 1.20060 1.93572 1.43254 1.84908 1.75810 1.93535 1.62642 1.64262 1.75453 1.21001 1.00530 0.89477 0.87277 1.19309 0.92035 0.93658 1.15663 1.18558 0.80226 0.86854 0.80432 1.90700 1.70958 1.44787 1.39981 1.47864 1.31890 1.16077 1.35999 1.21972 1.00938 0.89083 0.94394 1.19026 0.90503 0.82828 0.94754 0.94873 1.22320 1.00261 1.00307 0.98299 1.21326 0.91589 0.95469 1.48286 0.93636 1.25633 0.94628 1.02860 0.94292 1.69999 1.03402 1.33798 1.50449 0.85973 0.78426 0.79658 0.79127 1.17734 1.21997 1.18836 0.86969 0.89995 0.89879 0.80067 0.79758 0.84039 0.82716 0.82046 0.83716 0.92695 0.90121 0.89611 0.92690 0.91026 0.93527 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -9.39 9.56 -81.38 -0.78 -10.16 16 3 C 0.21 5.80 6.68 22.84 0.15 5.95 16 4 C -0.22 -3.81 9.03 22.34 0.20 -3.61 16 5 C 0.04 0.61 9.45 22.30 0.21 0.82 16 6 C -0.70 -14.04 5.65 22.24 0.13 -13.91 16 7 S 2.51 41.95 5.79 -56.49 -0.33 41.62 16 8 C -0.63 -4.45 10.80 113.37 1.22 -3.22 16 9 O -0.98 -25.65 17.11 -127.65 -2.18 -27.83 16 10 O -0.96 -19.33 17.11 -127.65 -2.18 -21.52 16 11 C 0.04 1.02 7.03 22.52 0.16 1.18 16 12 C -0.20 -6.80 4.90 -20.01 -0.10 -6.90 16 13 C 0.55 24.47 6.94 86.70 0.60 25.07 16 14 O -0.58 -30.53 15.89 4.36 0.07 -30.46 16 15 N -0.59 -26.44 2.75 -830.56 -2.29 -28.73 16 16 C 0.08 2.90 8.36 127.77 1.07 3.96 16 17 C 0.23 11.85 2.23 44.24 0.10 11.95 16 18 H 0.03 1.90 5.96 -2.38 -0.01 1.88 16 19 C -0.15 -6.73 8.65 71.98 0.62 -6.11 16 20 C -0.53 -30.91 8.95 25.60 0.23 -30.68 16 21 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 22 C 0.02 1.47 5.45 84.65 0.46 1.93 16 23 N -0.94 -58.61 13.96 21.45 0.30 -58.31 16 24 Si 0.94 46.10 24.37 68.60 1.67 47.78 16 25 H -0.25 -11.29 6.87 99.48 0.68 -10.60 16 26 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 27 H -0.26 -12.83 6.53 99.48 0.65 -12.18 16 28 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.08 0.83 7.66 -2.39 -0.02 0.81 16 30 H 0.08 0.81 7.66 -2.39 -0.02 0.79 16 31 H 0.18 1.58 6.30 -2.91 -0.02 1.56 16 32 H 0.19 1.45 7.55 -2.91 -0.02 1.42 16 33 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.15 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.16 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.15 4.26 6.08 -2.91 -0.02 4.25 16 37 H 0.05 2.09 7.48 -2.39 -0.02 2.07 16 38 H 0.08 2.83 6.44 -2.39 -0.02 2.82 16 39 H 0.09 2.66 5.67 -2.39 -0.01 2.65 16 40 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.07 2.89 6.68 -2.38 -0.02 2.87 16 42 H 0.05 2.07 3.27 -2.39 -0.01 2.06 16 43 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -91.32 358.54 1.42 -89.90 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 0.97 Total: 10.04 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: 6.17 Total: -12.31 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -1.99 Total: -87.04 kcal Atomic # 8 Polarization: -84.90 SS G_CDS: -5.08 Total: -89.98 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.67 Total: 47.78 kcal Atomic # 16 Polarization: 41.95 SS G_CDS: -0.33 Total: 41.62 kcal Total: -91.32 1.42 -89.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344600776.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.143 kcal (2) G-P(sol) polarization free energy of solvation -91.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds