Wall clock time and date at job start Sat Apr 11 2020 06:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 117.00158 * 2 1 4 4 O 1.20825 * 120.00078 * 359.72758 * 3 2 1 5 5 C 1.50702 * 120.00124 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.47208 * 59.72110 * 5 3 2 7 7 C 1.50703 * 109.47157 * 299.72527 * 5 3 2 8 8 C 1.38236 * 120.00144 * 111.15296 * 7 5 3 9 9 C 1.38236 * 119.99752 * 179.81549 * 8 7 5 10 10 C 1.38231 * 120.00239 * 0.39108 * 9 8 7 11 11 C 1.38238 * 119.99880 * 359.86422 * 10 9 8 12 12 C 1.38230 * 120.00234 * 359.95202 * 11 10 9 13 13 N 1.46495 * 109.47183 * 179.72614 * 5 3 2 14 14 C 1.46500 * 120.00215 * 54.64847 * 13 5 3 15 15 S 1.65596 * 119.99881 * 234.64571 * 13 5 3 16 16 O 1.42106 * 104.28117 * 206.07179 * 15 13 5 17 17 O 1.42106 * 104.27844 * 333.92666 * 15 13 5 18 18 C 1.81400 * 104.45040 * 89.99837 * 15 13 5 19 19 C 1.53000 * 109.47315 * 179.97438 * 18 15 13 20 20 C 1.50695 * 109.47339 * 180.02562 * 19 18 15 21 21 H 1.08008 * 120.00118 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00424 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00134 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99747 * 359.97438 * 22 20 19 25 25 H 1.48507 * 109.46873 * 90.00448 * 24 22 20 26 26 H 1.48500 * 109.47342 * 209.99981 * 24 22 20 27 27 H 1.48493 * 109.47365 * 330.00663 * 24 22 20 28 28 H 1.08997 * 109.46560 * 299.99855 * 1 2 3 29 29 H 1.08995 * 109.47086 * 59.99743 * 1 2 3 30 30 H 1.08998 * 109.46992 * 180.02562 * 1 2 3 31 31 H 1.07996 * 120.00090 * 359.97438 * 8 7 5 32 32 H 1.07999 * 119.99828 * 180.23135 * 9 8 7 33 33 H 1.08006 * 120.00125 * 179.83675 * 10 9 8 34 34 H 1.08003 * 119.99530 * 179.97438 * 11 10 9 35 35 H 1.07989 * 120.00070 * 180.02562 * 12 11 10 36 36 H 1.09000 * 109.47355 * 95.15867 * 14 13 5 37 37 H 1.08993 * 109.46974 * 215.16026 * 14 13 5 38 38 H 1.09008 * 109.46887 * 335.15935 * 14 13 5 39 39 H 1.08998 * 109.47242 * 300.00226 * 18 15 13 40 40 H 1.08999 * 109.46916 * 60.00386 * 18 15 13 41 41 H 1.09007 * 109.47328 * 300.00025 * 19 18 15 42 42 H 1.09001 * 109.47319 * 59.99856 * 19 18 15 43 43 H 0.97008 * 119.99750 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0050 5 6 3.5664 1.2748 -0.0006 6 1 3.9560 0.7766 -0.8883 7 6 4.1054 0.5973 1.2329 8 6 4.8061 -0.5889 1.1197 9 6 5.3038 -1.2083 2.2509 10 6 5.0938 -0.6458 3.4960 11 6 4.3886 0.5377 3.6097 12 6 3.8941 1.1591 2.4782 13 7 3.9818 2.6796 -0.0071 14 6 3.4857 3.5950 1.0236 15 16 5.0121 3.2330 -1.1794 16 8 5.6643 4.3428 -0.5775 17 8 5.7430 2.0806 -1.5760 18 6 3.9197 3.7857 -2.5180 19 6 4.7633 4.3262 -3.6744 20 6 3.8558 4.7860 -4.7861 21 1 2.7844 4.7009 -4.6788 22 6 4.3931 5.3145 -5.9407 23 7 3.6011 5.7153 -6.9111 24 14 6.2460 5.4611 -6.1266 25 1 6.7816 4.2198 -6.7411 26 1 6.5660 6.6217 -6.9960 27 1 6.8635 5.6582 -4.7906 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 4.9669 -1.0304 0.1473 32 1 5.8544 -2.1331 2.1620 33 1 5.4804 -1.1311 4.3800 34 1 4.2242 0.9770 4.5826 35 1 3.3436 2.0839 2.5671 36 1 4.2116 3.6570 1.8344 37 1 3.3391 4.5844 0.5907 38 1 2.5372 3.2244 1.4126 39 1 3.3194 2.9458 -2.8673 40 1 3.2628 4.5733 -2.1489 41 1 5.3634 5.1664 -3.3247 42 1 5.4206 3.5390 -4.0436 43 1 3.9791 6.0874 -7.7232 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346604063.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:07 Heat of formation + Delta-G solvation = -112.961624 kcal Electronic energy + Delta-G solvation = -28530.371920 eV Core-core repulsion = 24475.879298 eV Total energy + Delta-G solvation = -4054.492622 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.05969 -39.36466 -37.19434 -36.88282 -35.89886 -35.57965 -33.96405 -31.98522 -31.49554 -31.07190 -28.92675 -27.53153 -26.03914 -25.24341 -22.77336 -22.45221 -21.36080 -20.88590 -18.82883 -18.18132 -17.70297 -17.21985 -17.09858 -16.79409 -16.37897 -16.07000 -15.59732 -15.22120 -15.03865 -14.36670 -14.33852 -14.15704 -13.90434 -13.66922 -13.59793 -12.97939 -12.86939 -12.82021 -12.69143 -12.51804 -12.24316 -11.97731 -11.91234 -11.81231 -11.65932 -11.36243 -11.26848 -11.23097 -11.10279 -10.95776 -10.79843 -10.45938 -10.17682 -9.78353 -9.45768 -9.12470 -9.05996 -9.00212 -8.66772 -6.16717 -4.18202 0.46502 1.04050 1.20481 1.93531 2.28696 2.84983 3.26026 3.33503 3.37500 3.58503 4.07856 4.21678 4.35227 4.35377 4.47656 4.57702 4.70940 4.80539 4.89683 4.90645 4.97557 5.00780 5.14521 5.27310 5.31224 5.35807 5.45682 5.48845 5.53612 5.67325 5.72146 5.79764 5.84851 6.13189 6.21782 6.24690 6.26145 6.29489 6.34865 6.75105 6.79669 6.91500 7.49280 7.53686 8.36527 8.84788 9.42559 10.95661 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015338 B = 0.003578 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.044301 B = 7822.826243 C = 8687.727585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.352 6.352 3 C 0.456 3.544 4 O -0.486 6.486 5 C 0.205 3.795 6 H 0.144 0.856 7 C -0.094 4.094 8 C -0.089 4.089 9 C -0.120 4.120 10 C -0.113 4.113 11 C -0.122 4.122 12 C -0.110 4.110 13 N -0.985 5.985 14 C 0.088 3.912 15 S 2.584 3.416 16 O -0.951 6.951 17 O -0.958 6.958 18 C -0.579 4.579 19 C -0.006 4.006 20 C -0.519 4.519 21 H 0.078 0.922 22 C 0.072 3.928 23 N -0.895 5.895 24 Si 0.869 3.131 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.262 1.262 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.132 0.868 32 H 0.126 0.874 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.131 0.869 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.033 0.967 42 H 0.028 0.972 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.791 -14.585 21.221 25.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.267 6.267 3 C 0.295 3.705 4 O -0.372 6.372 5 C 0.096 3.904 6 H 0.162 0.838 7 C -0.096 4.096 8 C -0.107 4.107 9 C -0.138 4.138 10 C -0.131 4.131 11 C -0.140 4.140 12 C -0.128 4.128 13 N -0.819 5.819 14 C -0.057 4.057 15 S 2.683 3.317 16 O -0.941 6.941 17 O -0.949 6.949 18 C -0.713 4.713 19 C -0.046 4.046 20 C -0.558 4.558 21 H 0.096 0.904 22 C -0.131 4.131 23 N -0.533 5.533 24 Si 0.695 3.305 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.186 1.186 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.120 0.880 31 H 0.150 0.850 32 H 0.144 0.856 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.149 0.851 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.142 0.858 40 H 0.147 0.853 41 H 0.051 0.949 42 H 0.047 0.953 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.092 -14.178 21.153 25.551 hybrid contribution -0.068 0.321 -0.503 0.601 sum -2.160 -13.857 20.650 24.962 Atomic orbital electron populations 1.23313 0.76002 1.03831 1.02768 1.86515 1.23581 1.32850 1.83792 1.23960 0.91761 0.81902 0.72837 1.90674 1.66461 1.36015 1.44016 1.19069 0.87225 0.83675 1.00470 0.83825 1.19570 1.00714 0.96035 0.93245 1.21101 0.96009 0.94084 0.99523 1.21143 1.00071 1.00251 0.92371 1.21224 0.98362 0.95909 0.97644 1.21119 0.98675 0.95896 0.98333 1.21378 0.99624 0.99935 0.91880 1.57725 1.66095 1.13820 1.44287 1.21730 0.99896 0.92777 0.91261 1.06081 0.75712 0.74551 0.75376 1.93566 1.71804 1.53851 1.74900 1.93546 1.68789 1.49426 1.83096 1.30322 1.14647 1.11744 1.14575 1.19426 0.95678 0.96674 0.92800 1.20840 0.94514 1.41888 0.98591 0.90381 1.24983 0.98141 0.94455 0.95500 1.69884 1.35158 1.41669 1.06588 0.86929 0.86000 0.78486 0.79077 1.19624 1.20703 1.18608 0.91900 0.91485 0.87966 0.85045 0.85602 0.85989 0.85865 0.85138 0.92204 0.90498 0.89845 0.85809 0.85260 0.94873 0.95348 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.35 16 2 O -0.35 -3.90 10.49 -39.25 -0.41 -4.31 16 3 C 0.46 5.76 6.78 36.01 0.24 6.01 16 4 O -0.49 -6.95 13.90 -18.75 -0.26 -7.21 16 5 C 0.20 2.61 2.75 -70.23 -0.19 2.41 16 6 H 0.14 1.73 6.75 -51.93 -0.35 1.38 16 7 C -0.09 -1.09 4.88 -104.62 -0.51 -1.60 16 8 C -0.09 -0.94 9.67 -39.58 -0.38 -1.32 16 9 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 10 C -0.11 -0.96 10.05 -39.58 -0.40 -1.36 16 11 C -0.12 -1.11 10.05 -39.58 -0.40 -1.50 16 12 C -0.11 -1.17 8.53 -39.58 -0.34 -1.50 16 13 N -0.99 -13.90 2.81 -117.10 -0.33 -14.23 16 14 C 0.09 1.07 7.34 59.85 0.44 1.51 16 15 S 2.58 45.18 5.37 -107.50 -0.58 44.60 16 16 O -0.95 -18.80 17.19 -57.54 -0.99 -19.79 16 17 O -0.96 -18.12 16.64 -57.54 -0.96 -19.08 16 18 C -0.58 -11.03 6.12 37.16 0.23 -10.80 16 19 C -0.01 -0.15 4.05 -27.89 -0.11 -0.27 16 20 C -0.52 -14.65 9.66 -34.44 -0.33 -14.99 16 21 H 0.08 2.33 7.99 -52.48 -0.42 1.91 16 22 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 23 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 24 Si 0.87 21.51 27.47 -169.99 -4.67 16.84 16 25 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 27 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 30 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.13 1.22 7.97 -52.49 -0.42 0.80 16 32 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 34 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 35 H 0.13 1.27 4.67 -52.49 -0.24 1.03 16 36 H 0.06 0.66 7.32 -51.93 -0.38 0.28 16 37 H 0.08 0.92 7.98 -51.93 -0.41 0.51 16 38 H 0.08 0.93 4.94 -51.92 -0.26 0.67 16 39 H 0.12 2.17 8.14 -51.92 -0.42 1.75 16 40 H 0.13 2.31 8.14 -51.92 -0.42 1.89 16 41 H 0.03 0.79 7.20 -51.93 -0.37 0.42 16 42 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 370.07 15.07 5.58 5.58 Total: -1.00 -35.56 370.07 -8.83 -44.39 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -5.80 Total: 1.19 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: -1.18 Total: -21.55 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.44 Total: -40.64 kcal Atomic # 8 Polarization: -47.77 SS G_CDS: -2.62 Total: -50.39 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Atomic # 16 Polarization: 45.18 SS G_CDS: -0.58 Total: 44.60 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.56 -8.83 -44.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346604063.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.574 kcal (2) G-P(sol) polarization free energy of solvation -35.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds