Wall clock time and date at job start Sat Apr 11 2020 06:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 117.00158 * 2 1 4 4 O 1.20825 * 120.00078 * 359.72758 * 3 2 1 5 5 C 1.50702 * 120.00124 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.47208 * 59.72110 * 5 3 2 7 7 C 1.50703 * 109.47157 * 299.72527 * 5 3 2 8 8 C 1.38236 * 120.00144 * 111.15296 * 7 5 3 9 9 C 1.38236 * 119.99752 * 179.81549 * 8 7 5 10 10 C 1.38231 * 120.00239 * 0.39108 * 9 8 7 11 11 C 1.38238 * 119.99880 * 359.86422 * 10 9 8 12 12 C 1.38230 * 120.00234 * 359.95202 * 11 10 9 13 13 N 1.46495 * 109.47183 * 179.72614 * 5 3 2 14 14 C 1.46500 * 120.00215 * 54.64847 * 13 5 3 15 15 S 1.65596 * 119.99881 * 234.64571 * 13 5 3 16 16 O 1.42106 * 104.28117 * 206.07179 * 15 13 5 17 17 O 1.42106 * 104.27844 * 333.92666 * 15 13 5 18 18 C 1.81400 * 104.45040 * 89.99837 * 15 13 5 19 19 C 1.53000 * 109.47315 * 179.97438 * 18 15 13 20 20 C 1.50695 * 109.47339 * 180.02562 * 19 18 15 21 21 H 1.08008 * 120.00118 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00424 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00134 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99747 * 359.97438 * 22 20 19 25 25 H 1.48507 * 109.46873 * 90.00448 * 24 22 20 26 26 H 1.48500 * 109.47342 * 209.99981 * 24 22 20 27 27 H 1.48493 * 109.47365 * 330.00663 * 24 22 20 28 28 H 1.08997 * 109.46560 * 299.99855 * 1 2 3 29 29 H 1.08995 * 109.47086 * 59.99743 * 1 2 3 30 30 H 1.08998 * 109.46992 * 180.02562 * 1 2 3 31 31 H 1.07996 * 120.00090 * 359.97438 * 8 7 5 32 32 H 1.07999 * 119.99828 * 180.23135 * 9 8 7 33 33 H 1.08006 * 120.00125 * 179.83675 * 10 9 8 34 34 H 1.08003 * 119.99530 * 179.97438 * 11 10 9 35 35 H 1.07989 * 120.00070 * 180.02562 * 12 11 10 36 36 H 1.09000 * 109.47355 * 95.15867 * 14 13 5 37 37 H 1.08993 * 109.46974 * 215.16026 * 14 13 5 38 38 H 1.09008 * 109.46887 * 335.15935 * 14 13 5 39 39 H 1.08998 * 109.47242 * 300.00226 * 18 15 13 40 40 H 1.08999 * 109.46916 * 60.00386 * 18 15 13 41 41 H 1.09007 * 109.47328 * 300.00025 * 19 18 15 42 42 H 1.09001 * 109.47319 * 59.99856 * 19 18 15 43 43 H 0.97008 * 119.99750 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0050 5 6 3.5664 1.2748 -0.0006 6 1 3.9560 0.7766 -0.8883 7 6 4.1054 0.5973 1.2329 8 6 4.8061 -0.5889 1.1197 9 6 5.3038 -1.2083 2.2509 10 6 5.0938 -0.6458 3.4960 11 6 4.3886 0.5377 3.6097 12 6 3.8941 1.1591 2.4782 13 7 3.9818 2.6796 -0.0071 14 6 3.4857 3.5950 1.0236 15 16 5.0121 3.2330 -1.1794 16 8 5.6643 4.3428 -0.5775 17 8 5.7430 2.0806 -1.5760 18 6 3.9197 3.7857 -2.5180 19 6 4.7633 4.3262 -3.6744 20 6 3.8558 4.7860 -4.7861 21 1 2.7844 4.7009 -4.6788 22 6 4.3931 5.3145 -5.9407 23 7 3.6011 5.7153 -6.9111 24 14 6.2460 5.4611 -6.1266 25 1 6.7816 4.2198 -6.7411 26 1 6.5660 6.6217 -6.9960 27 1 6.8635 5.6582 -4.7906 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 4.9669 -1.0304 0.1473 32 1 5.8544 -2.1331 2.1620 33 1 5.4804 -1.1311 4.3800 34 1 4.2242 0.9770 4.5826 35 1 3.3436 2.0839 2.5671 36 1 4.2116 3.6570 1.8344 37 1 3.3391 4.5844 0.5907 38 1 2.5372 3.2244 1.4126 39 1 3.3194 2.9458 -2.8673 40 1 3.2628 4.5733 -2.1489 41 1 5.3634 5.1664 -3.3247 42 1 5.4206 3.5390 -4.0436 43 1 3.9791 6.0874 -7.7232 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346604063.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:06 Heat of formation + Delta-G solvation = -136.828241 kcal Electronic energy + Delta-G solvation = -28531.406854 eV Core-core repulsion = 24475.879298 eV Total energy + Delta-G solvation = -4055.527557 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.99230 -40.13099 -38.36605 -38.11160 -37.19907 -36.76944 -35.93569 -33.52070 -32.83100 -31.78281 -29.73393 -28.35180 -27.95080 -26.27258 -23.48764 -23.32910 -23.07980 -21.92295 -20.11632 -19.51583 -18.95725 -18.66684 -18.10654 -17.87466 -17.35095 -17.13057 -16.95405 -16.41877 -16.29683 -15.89804 -15.40273 -15.14247 -15.04737 -14.85368 -14.71843 -14.37104 -13.86943 -13.83086 -13.74848 -13.57735 -13.52159 -13.32778 -13.16997 -13.11066 -13.02640 -12.95962 -12.92074 -12.27429 -12.16369 -12.01622 -11.88650 -11.85079 -11.75061 -11.67911 -11.32741 -10.86181 -10.24800 -9.81220 -9.76193 -8.38257 -6.45074 -0.94118 0.29097 0.50320 0.96829 1.23142 1.31902 1.33409 1.44055 1.79131 2.28605 2.65637 2.81778 2.95305 3.03485 3.29090 3.55975 3.69052 3.75680 3.89261 3.97807 4.12818 4.20169 4.28111 4.31242 4.32990 4.49386 4.55092 4.62425 4.65088 4.69390 4.78274 4.83744 4.99658 5.00822 5.04503 5.15687 5.18778 5.25977 5.44181 5.54248 5.58409 5.62036 6.08080 6.14348 6.55326 6.60676 7.19348 8.77562 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015338 B = 0.003578 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.044301 B = 7822.826243 C = 8687.727585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.460 3.540 4 O -0.508 6.508 5 C 0.198 3.802 6 H 0.147 0.853 7 C -0.112 4.112 8 C -0.105 4.105 9 C -0.124 4.124 10 C -0.113 4.113 11 C -0.126 4.126 12 C -0.124 4.124 13 N -0.979 5.979 14 C 0.080 3.920 15 S 2.616 3.384 16 O -0.971 6.971 17 O -0.971 6.971 18 C -0.590 4.590 19 C -0.014 4.014 20 C -0.531 4.531 21 H 0.044 0.956 22 C 0.013 3.987 23 N -0.940 5.940 24 Si 0.928 3.072 25 H -0.257 1.257 26 H -0.273 1.273 27 H -0.248 1.248 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.134 0.866 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.132 0.868 40 H 0.135 0.865 41 H 0.035 0.965 42 H 0.036 0.964 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.523 -16.137 23.441 28.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.301 3.699 4 O -0.396 6.396 5 C 0.090 3.910 6 H 0.164 0.836 7 C -0.114 4.114 8 C -0.124 4.124 9 C -0.142 4.142 10 C -0.130 4.130 11 C -0.144 4.144 12 C -0.142 4.142 13 N -0.815 5.815 14 C -0.063 4.063 15 S 2.713 3.287 16 O -0.962 6.962 17 O -0.961 6.961 18 C -0.721 4.721 19 C -0.054 4.054 20 C -0.569 4.569 21 H 0.062 0.938 22 C -0.185 4.185 23 N -0.580 5.580 24 Si 0.750 3.250 25 H -0.182 1.182 26 H -0.198 1.198 27 H -0.171 1.171 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.152 0.848 31 H 0.154 0.846 32 H 0.166 0.834 33 H 0.167 0.833 34 H 0.163 0.837 35 H 0.151 0.849 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.151 0.849 40 H 0.153 0.847 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.839 -15.741 23.363 28.184 hybrid contribution -0.607 0.699 -1.086 1.427 sum -1.446 -15.043 22.277 26.919 Atomic orbital electron populations 1.23607 0.74363 1.05912 1.02677 1.86504 1.25154 1.31894 1.83289 1.23923 0.91745 0.82026 0.72223 1.90663 1.66943 1.36728 1.45300 1.19242 0.87513 0.82675 1.01598 0.83612 1.19554 1.02061 0.96832 0.92938 1.21315 0.96349 0.94129 1.00578 1.21469 0.99681 1.00931 0.92094 1.21609 0.97414 0.95556 0.98469 1.21442 0.98098 0.96052 0.98803 1.21532 1.00187 1.00406 0.92113 1.57395 1.65981 1.14866 1.43278 1.21944 1.00860 0.92438 0.91085 1.04931 0.75187 0.73735 0.74814 1.93534 1.72482 1.55012 1.75130 1.93523 1.69304 1.49672 1.83585 1.30352 1.15001 1.12337 1.14399 1.19376 0.95717 0.97057 0.93203 1.21142 0.93822 1.41735 1.00247 0.93759 1.25910 1.03331 0.94130 0.95157 1.70018 1.37505 1.43040 1.07425 0.85987 0.79893 0.79275 0.79885 1.18167 1.19790 1.17144 0.91455 0.92155 0.84847 0.84563 0.83371 0.83284 0.83673 0.84880 0.90794 0.90520 0.88748 0.84926 0.84703 0.94712 0.94577 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.62 16 2 O -0.35 -7.50 10.49 -51.39 -0.54 -8.04 16 3 C 0.46 11.37 6.78 71.24 0.48 11.86 16 4 O -0.51 -14.39 13.90 21.97 0.31 -14.08 16 5 C 0.20 4.90 2.75 43.50 0.12 5.02 16 6 H 0.15 3.46 6.75 -2.39 -0.02 3.44 16 7 C -0.11 -2.47 4.88 -19.86 -0.10 -2.57 16 8 C -0.11 -2.06 9.67 22.27 0.22 -1.84 16 9 C -0.12 -1.92 10.05 22.27 0.22 -1.69 16 10 C -0.11 -1.56 10.05 22.27 0.22 -1.34 16 11 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 12 C -0.12 -2.43 8.53 22.27 0.19 -2.24 16 13 N -0.98 -26.85 2.81 -524.40 -1.48 -28.33 16 14 C 0.08 1.89 7.34 127.77 0.94 2.82 16 15 S 2.62 89.59 5.37 -56.49 -0.30 89.29 16 16 O -0.97 -37.48 17.19 -127.65 -2.19 -39.67 16 17 O -0.97 -35.77 16.64 -127.65 -2.12 -37.89 16 18 C -0.59 -22.54 6.12 71.98 0.44 -22.10 16 19 C -0.01 -0.69 4.05 29.85 0.12 -0.57 16 20 C -0.53 -30.69 9.66 25.60 0.25 -30.44 16 21 H 0.04 2.77 7.99 -2.91 -0.02 2.74 16 22 C 0.01 0.78 5.47 84.65 0.46 1.24 16 23 N -0.94 -58.51 13.96 21.45 0.30 -58.22 16 24 Si 0.93 43.95 27.47 68.60 1.88 45.83 16 25 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 26 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 27 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 30 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.14 2.38 7.97 -2.91 -0.02 2.36 16 32 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 33 H 0.15 1.22 8.06 -2.91 -0.02 1.19 16 34 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 35 H 0.13 2.40 4.67 -2.92 -0.01 2.39 16 36 H 0.07 1.52 7.32 -2.39 -0.02 1.51 16 37 H 0.08 1.79 7.98 -2.39 -0.02 1.77 16 38 H 0.09 2.01 4.94 -2.38 -0.01 2.00 16 39 H 0.13 4.73 8.14 -2.39 -0.02 4.71 16 40 H 0.13 4.91 8.14 -2.39 -0.02 4.89 16 41 H 0.03 1.64 7.20 -2.38 -0.02 1.62 16 42 H 0.04 1.66 7.57 -2.39 -0.02 1.64 16 43 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 Total: -1.00 -76.74 370.07 1.81 -74.93 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.97 Total: 18.13 kcal Atomic # 6 Polarization: -46.95 SS G_CDS: 4.99 Total: -41.96 kcal Atomic # 7 Polarization: -85.37 SS G_CDS: -1.18 Total: -86.54 kcal Atomic # 8 Polarization: -95.13 SS G_CDS: -4.55 Total: -99.68 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.88 Total: 45.83 kcal Atomic # 16 Polarization: 89.59 SS G_CDS: -0.30 Total: 89.29 kcal Total: -76.74 1.81 -74.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346604063.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.893 kcal (2) G-P(sol) polarization free energy of solvation -76.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds