Wall clock time and date at job start Sat Apr 11 2020 06:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45203 * 109.47200 * 2 1 4 4 C 1.34230 * 116.99778 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00523 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99460 * 179.97438 * 4 3 2 7 7 C 1.50703 * 109.46909 * 180.02562 * 6 4 3 8 8 C 1.38260 * 119.99616 * 269.97377 * 7 6 4 9 9 C 1.38215 * 119.99676 * 179.97438 * 8 7 6 10 10 C 1.38264 * 119.99929 * 359.82310 * 9 8 7 11 11 C 1.38208 * 119.99960 * 0.43485 * 10 9 8 12 12 S 1.76197 * 120.00035 * 179.79183 * 11 10 9 13 13 O 1.42101 * 106.40487 * 156.18662 * 12 11 10 14 14 O 1.42106 * 106.40322 * 23.26454 * 12 11 10 15 15 N 1.65605 * 107.21776 * 269.72556 * 12 11 10 16 16 C 1.46497 * 120.00032 * 65.00008 * 15 12 11 17 17 H 1.09007 * 109.47078 * 24.99629 * 16 15 12 18 18 C 1.53000 * 109.47021 * 265.00209 * 16 15 12 19 19 C 1.50694 * 109.47115 * 144.99990 * 16 15 12 20 20 H 1.08000 * 120.00563 * 359.97438 * 19 16 15 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 16 15 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 16 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 16 24 24 H 1.48506 * 109.46985 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47276 * 299.99832 * 23 21 19 26 26 H 1.48498 * 109.47150 * 60.00043 * 23 21 19 27 27 C 1.38213 * 119.99858 * 90.00277 * 7 6 4 28 28 H 1.09005 * 109.47045 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47144 * 300.00193 * 1 2 3 30 30 H 1.09002 * 109.47127 * 60.00835 * 1 2 3 31 31 H 1.09000 * 109.47426 * 239.99499 * 2 1 3 32 32 H 1.09004 * 109.47121 * 119.99943 * 2 1 3 33 33 H 1.09001 * 109.47592 * 60.00025 * 6 4 3 34 34 H 1.09001 * 109.47562 * 299.99863 * 6 4 3 35 35 H 1.07994 * 120.00127 * 359.97438 * 8 7 6 36 36 H 1.07998 * 120.00169 * 179.97438 * 9 8 7 37 37 H 1.07997 * 119.99588 * 180.22975 * 10 9 8 38 38 H 0.96997 * 119.99799 * 244.99417 * 15 12 11 39 39 H 1.08995 * 109.47131 * 179.97438 * 18 16 15 40 40 H 1.09002 * 109.47106 * 299.99878 * 18 16 15 41 41 H 1.08998 * 109.47089 * 59.99825 * 18 16 15 42 42 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 43 43 H 1.07997 * 120.00489 * 359.97139 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5867 0.0015 6 6 3.9207 2.9374 0.0000 7 6 5.4256 2.8585 0.0001 8 6 6.1158 2.8234 1.1976 9 6 7.4961 2.7505 1.1977 10 6 8.1863 2.7091 0.0004 11 6 7.4965 2.7496 -1.1966 12 16 8.3764 2.7023 -2.7224 13 8 7.4677 2.2035 -3.6944 14 8 9.6293 2.0921 -2.4444 15 7 8.7034 4.2688 -3.1484 16 6 9.5950 5.0827 -2.3185 17 1 10.2714 4.4313 -1.7650 18 6 8.7635 5.9085 -1.3348 19 6 10.3959 6.0071 -3.1988 20 1 10.2553 5.9898 -4.2695 21 6 11.3091 6.8744 -2.6374 22 7 11.4808 6.8951 -1.3337 23 14 12.3024 8.0197 -3.7287 24 1 13.2061 8.8449 -2.8874 25 1 13.1091 7.2178 -4.6834 26 1 11.3813 8.9074 -4.4828 27 6 6.1158 2.8219 -1.1968 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.5843 3.4701 0.8895 34 1 3.5852 3.4690 -0.8905 35 1 5.5766 2.8529 2.1328 36 1 8.0353 2.7235 2.1331 37 1 9.2645 2.6484 0.0006 38 1 8.3047 4.6474 -3.9475 39 1 9.4268 6.5137 -0.7170 40 1 8.0870 6.5598 -1.8883 41 1 8.1842 5.2398 -0.6981 42 1 12.1235 7.5050 -0.9388 43 1 5.5766 2.8493 -2.1322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351661034.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:19 Heat of formation + Delta-G solvation = -143.733895 kcal Electronic energy + Delta-G solvation = -27576.067550 eV Core-core repulsion = 23520.240542 eV Total energy + Delta-G solvation = -4055.827008 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.79300 -39.16983 -36.84756 -36.68616 -35.45094 -35.27691 -33.29197 -32.19231 -31.97136 -31.15058 -28.37245 -28.12181 -25.25352 -23.84630 -23.17626 -22.29932 -21.04749 -20.87969 -18.83455 -17.96988 -17.50418 -17.31208 -16.98187 -16.36430 -16.15665 -15.73883 -15.70096 -15.09008 -14.64245 -14.27297 -14.26775 -13.72935 -13.58347 -13.42728 -13.02980 -12.73061 -12.67047 -12.65425 -12.18755 -12.17135 -12.05200 -11.93245 -11.72540 -11.55006 -11.49187 -11.22742 -11.16671 -10.97321 -10.83495 -10.72231 -10.67781 -10.41688 -10.34218 -10.09678 -9.29300 -9.17238 -8.82543 -8.63886 -8.29410 -6.13697 -4.20543 0.85236 1.12027 1.28675 2.00456 2.44800 3.27693 3.32172 3.34856 3.49967 3.83513 4.29742 4.30913 4.36567 4.55185 4.56769 4.64614 4.67386 4.91873 4.95019 4.95951 5.05693 5.18898 5.21059 5.30740 5.34734 5.40359 5.57117 5.59476 5.79542 5.95425 6.18854 6.22000 6.28026 6.33736 6.38079 6.75468 6.82385 6.89705 6.99196 7.54185 7.55449 7.65345 7.85274 7.99651 8.25597 8.81672 9.45165 10.92446 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021096 B = 0.002692 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.941870 B =10398.677065 C =10688.520987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.361 6.361 4 C 0.460 3.540 5 O -0.495 6.495 6 C -0.069 4.069 7 C -0.110 4.110 8 C -0.053 4.053 9 C -0.139 4.139 10 C -0.003 4.003 11 C -0.663 4.663 12 S 2.688 3.312 13 O -0.982 6.982 14 O -0.960 6.960 15 N -1.098 6.098 16 C 0.268 3.732 17 H 0.051 0.949 18 C -0.159 4.159 19 C -0.521 4.521 20 H 0.064 0.936 21 C 0.064 3.936 22 N -0.889 5.889 23 Si 0.902 3.098 24 H -0.287 1.287 25 H -0.275 1.275 26 H -0.277 1.277 27 C -0.002 4.002 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.132 0.868 37 H 0.143 0.857 38 H 0.409 0.591 39 H 0.093 0.907 40 H 0.033 0.967 41 H 0.014 0.986 42 H 0.265 0.735 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.853 -7.675 6.707 21.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.279 6.279 4 C 0.302 3.698 5 O -0.381 6.381 6 C -0.107 4.107 7 C -0.111 4.111 8 C -0.071 4.071 9 C -0.157 4.157 10 C -0.023 4.023 11 C -0.748 4.748 12 S 2.776 3.224 13 O -0.972 6.972 14 O -0.950 6.950 15 N -0.859 5.859 16 C 0.164 3.836 17 H 0.069 0.931 18 C -0.219 4.219 19 C -0.561 4.561 20 H 0.082 0.918 21 C -0.139 4.139 22 N -0.527 5.527 23 Si 0.730 3.270 24 H -0.212 1.212 25 H -0.201 1.201 26 H -0.202 1.202 27 C -0.022 4.022 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.143 0.857 36 H 0.150 0.850 37 H 0.161 0.839 38 H 0.243 0.757 39 H 0.112 0.888 40 H 0.053 0.947 41 H 0.034 0.966 42 H 0.075 0.925 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.230 -8.743 6.585 21.263 hybrid contribution 0.033 1.027 -0.124 1.035 sum -18.197 -7.716 6.461 20.795 Atomic orbital electron populations 1.21807 0.92568 1.03005 1.03543 1.23036 0.95352 0.80185 1.02746 1.86496 1.24580 1.32498 1.84287 1.23713 0.80487 0.92803 0.72825 1.90720 1.60294 1.42988 1.44143 1.20290 0.92007 0.91349 1.07040 1.19232 0.93010 1.04855 0.94008 1.21182 0.94629 0.94218 0.97092 1.21222 0.94112 1.01944 0.98460 1.21042 1.00680 0.89493 0.91046 1.31189 1.05962 1.16341 1.21284 1.01927 0.73595 0.73591 0.73293 1.93519 1.65955 1.79230 1.58479 1.93572 1.41081 1.74998 1.85356 1.55526 1.61340 1.31954 1.37125 1.18623 0.86371 0.89791 0.88808 0.93131 1.22305 0.99611 1.00365 0.99605 1.21180 1.21362 1.19953 0.93565 0.91767 1.24911 0.96698 0.97069 0.95218 1.69849 1.35261 1.37934 1.09633 0.86496 0.79859 0.80441 0.80242 1.21210 1.20093 1.20211 1.20660 0.92249 0.91153 0.98105 0.90227 0.91491 0.91388 0.91091 0.91253 0.86516 0.86356 0.85699 0.84974 0.83902 0.75664 0.88817 0.94747 0.96650 0.92542 0.84652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.29 37.16 0.38 -0.45 16 2 C 0.06 0.50 6.19 37.16 0.23 0.73 16 3 O -0.36 -3.63 10.22 -39.26 -0.40 -4.03 16 4 C 0.46 5.31 7.95 36.01 0.29 5.60 16 5 O -0.50 -7.49 15.78 -18.75 -0.30 -7.79 16 6 C -0.07 -0.65 5.94 -29.03 -0.17 -0.82 16 7 C -0.11 -1.42 4.37 -104.62 -0.46 -1.87 16 8 C -0.05 -0.65 9.70 -39.58 -0.38 -1.03 16 9 C -0.14 -1.88 10.05 -39.58 -0.40 -2.28 16 10 C 0.00 -0.06 8.60 -39.58 -0.34 -0.40 16 11 C -0.66 -11.33 5.06 -39.58 -0.20 -11.53 16 12 S 2.69 51.97 5.72 -107.50 -0.61 51.36 16 13 O -0.98 -19.79 17.28 -57.17 -0.99 -20.77 16 14 O -0.96 -21.44 16.61 -57.17 -0.95 -22.39 16 15 N -1.10 -21.98 5.46 -5.88 -0.03 -22.01 16 16 C 0.27 6.31 2.89 -69.09 -0.20 6.11 16 17 H 0.05 1.30 7.50 -51.92 -0.39 0.91 16 18 C -0.16 -3.51 9.29 37.16 0.35 -3.16 16 19 C -0.52 -13.53 8.76 -34.44 -0.30 -13.83 16 20 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 21 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 22 N -0.89 -23.93 11.32 55.43 0.63 -23.30 16 23 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 24 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 C 0.00 -0.04 9.18 -39.58 -0.36 -0.40 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 32 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 33 H 0.12 0.76 8.09 -51.93 -0.42 0.34 16 34 H 0.12 0.89 8.08 -51.93 -0.42 0.47 16 35 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 36 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.14 2.34 7.61 -52.49 -0.40 1.94 16 38 H 0.41 7.40 8.83 -34.47 -0.30 7.10 16 39 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.01 0.29 6.18 -51.93 -0.32 -0.03 16 42 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 43 H 0.14 1.87 7.62 -52.49 -0.40 1.47 16 LS Contribution 377.90 15.07 5.69 5.69 Total: -1.00 -33.74 377.90 -9.54 -43.28 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.90 Total: 6.24 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -1.67 Total: -21.75 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: 0.60 Total: -45.31 kcal Atomic # 8 Polarization: -52.35 SS G_CDS: -2.64 Total: -54.98 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 51.97 SS G_CDS: -0.61 Total: 51.36 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.74 -9.54 -43.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351661034.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.450 kcal (2) G-P(sol) polarization free energy of solvation -33.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds