Wall clock time and date at job start Sat Apr 11 2020 06:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45203 * 109.47200 * 2 1 4 4 C 1.34230 * 116.99778 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00523 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99460 * 179.97438 * 4 3 2 7 7 C 1.50703 * 109.46909 * 180.02562 * 6 4 3 8 8 C 1.38260 * 119.99616 * 269.97377 * 7 6 4 9 9 C 1.38215 * 119.99676 * 179.97438 * 8 7 6 10 10 C 1.38264 * 119.99929 * 359.82310 * 9 8 7 11 11 C 1.38208 * 119.99960 * 0.43485 * 10 9 8 12 12 S 1.76197 * 120.00035 * 179.79183 * 11 10 9 13 13 O 1.42101 * 106.40487 * 156.18662 * 12 11 10 14 14 O 1.42106 * 106.40322 * 23.26454 * 12 11 10 15 15 N 1.65605 * 107.21776 * 269.72556 * 12 11 10 16 16 C 1.46497 * 120.00032 * 65.00008 * 15 12 11 17 17 H 1.09007 * 109.47078 * 24.99629 * 16 15 12 18 18 C 1.53000 * 109.47021 * 265.00209 * 16 15 12 19 19 C 1.50694 * 109.47115 * 144.99990 * 16 15 12 20 20 H 1.08000 * 120.00563 * 359.97438 * 19 16 15 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 16 15 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 16 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 16 24 24 H 1.48506 * 109.46985 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47276 * 299.99832 * 23 21 19 26 26 H 1.48498 * 109.47150 * 60.00043 * 23 21 19 27 27 C 1.38213 * 119.99858 * 90.00277 * 7 6 4 28 28 H 1.09005 * 109.47045 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47144 * 300.00193 * 1 2 3 30 30 H 1.09002 * 109.47127 * 60.00835 * 1 2 3 31 31 H 1.09000 * 109.47426 * 239.99499 * 2 1 3 32 32 H 1.09004 * 109.47121 * 119.99943 * 2 1 3 33 33 H 1.09001 * 109.47592 * 60.00025 * 6 4 3 34 34 H 1.09001 * 109.47562 * 299.99863 * 6 4 3 35 35 H 1.07994 * 120.00127 * 359.97438 * 8 7 6 36 36 H 1.07998 * 120.00169 * 179.97438 * 9 8 7 37 37 H 1.07997 * 119.99588 * 180.22975 * 10 9 8 38 38 H 0.96997 * 119.99799 * 244.99417 * 15 12 11 39 39 H 1.08995 * 109.47131 * 179.97438 * 18 16 15 40 40 H 1.09002 * 109.47106 * 299.99878 * 18 16 15 41 41 H 1.08998 * 109.47089 * 59.99825 * 18 16 15 42 42 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 43 43 H 1.07997 * 120.00489 * 359.97139 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5867 0.0015 6 6 3.9207 2.9374 0.0000 7 6 5.4256 2.8585 0.0001 8 6 6.1158 2.8234 1.1976 9 6 7.4961 2.7505 1.1977 10 6 8.1863 2.7091 0.0004 11 6 7.4965 2.7496 -1.1966 12 16 8.3764 2.7023 -2.7224 13 8 7.4677 2.2035 -3.6944 14 8 9.6293 2.0921 -2.4444 15 7 8.7034 4.2688 -3.1484 16 6 9.5950 5.0827 -2.3185 17 1 10.2714 4.4313 -1.7650 18 6 8.7635 5.9085 -1.3348 19 6 10.3959 6.0071 -3.1988 20 1 10.2553 5.9898 -4.2695 21 6 11.3091 6.8744 -2.6374 22 7 11.4808 6.8951 -1.3337 23 14 12.3024 8.0197 -3.7287 24 1 13.2061 8.8449 -2.8874 25 1 13.1091 7.2178 -4.6834 26 1 11.3813 8.9074 -4.4828 27 6 6.1158 2.8219 -1.1968 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.5843 3.4701 0.8895 34 1 3.5852 3.4690 -0.8905 35 1 5.5766 2.8529 2.1328 36 1 8.0353 2.7235 2.1331 37 1 9.2645 2.6484 0.0006 38 1 8.3047 4.6474 -3.9475 39 1 9.4268 6.5137 -0.7170 40 1 8.0870 6.5598 -1.8883 41 1 8.1842 5.2398 -0.6981 42 1 12.1235 7.5050 -0.9388 43 1 5.5766 2.8493 -2.1322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351661034.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:18 Heat of formation + Delta-G solvation = -166.312918 kcal Electronic energy + Delta-G solvation = -27577.046650 eV Core-core repulsion = 23520.240542 eV Total energy + Delta-G solvation = -4056.806108 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.66899 -40.21087 -38.34232 -37.70245 -37.25004 -36.93284 -34.26090 -34.10199 -32.57506 -32.26521 -30.11851 -29.09309 -27.21730 -24.56720 -24.31615 -23.21081 -22.79682 -21.88125 -20.37747 -19.14047 -18.79515 -18.70670 -17.84577 -17.77420 -17.20803 -17.16221 -16.98911 -16.67840 -16.02986 -15.46161 -15.22967 -15.13043 -14.55759 -14.52685 -14.36225 -14.02150 -13.83541 -13.59270 -13.53158 -13.34683 -13.23566 -13.21506 -13.12771 -12.96610 -12.81311 -12.78339 -12.51131 -12.45894 -12.29098 -12.19788 -11.99117 -11.72299 -11.62307 -11.53265 -11.12174 -10.57892 -10.37231 -10.06673 -9.91607 -8.12884 -6.26383 -0.54720 -0.16958 0.20090 1.15712 1.46773 1.48260 1.55337 1.67177 2.14870 2.45595 2.53302 2.83624 3.16710 3.29335 3.54263 3.81152 3.86354 3.98291 4.00474 4.08781 4.17128 4.22216 4.35329 4.44649 4.54784 4.55423 4.74581 4.83014 4.92348 4.93252 4.94075 5.05325 5.07035 5.15746 5.16901 5.24530 5.31623 5.45832 5.60448 5.78584 5.83343 6.06071 6.13566 6.42525 6.71021 6.82976 7.42379 8.92152 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021096 B = 0.002692 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.941870 B =10398.677065 C =10688.520987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.358 6.358 4 C 0.462 3.538 5 O -0.539 6.539 6 C -0.067 4.067 7 C -0.107 4.107 8 C -0.045 4.045 9 C -0.139 4.139 10 C -0.031 4.031 11 C -0.674 4.674 12 S 2.699 3.301 13 O -0.993 6.993 14 O -0.999 6.999 15 N -1.098 6.098 16 C 0.273 3.727 17 H 0.021 0.979 18 C -0.146 4.146 19 C -0.543 4.543 20 H 0.064 0.936 21 C 0.018 3.982 22 N -0.911 5.911 23 Si 0.961 3.039 24 H -0.283 1.283 25 H -0.277 1.277 26 H -0.268 1.268 27 C -0.018 4.018 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.156 0.844 34 H 0.141 0.859 35 H 0.167 0.833 36 H 0.159 0.841 37 H 0.128 0.872 38 H 0.417 0.583 39 H 0.070 0.930 40 H 0.039 0.961 41 H 0.037 0.963 42 H 0.266 0.734 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.401 -6.857 7.885 23.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 O -0.275 6.275 4 C 0.307 3.693 5 O -0.429 6.429 6 C -0.104 4.104 7 C -0.108 4.108 8 C -0.063 4.063 9 C -0.158 4.158 10 C -0.050 4.050 11 C -0.764 4.764 12 S 2.792 3.208 13 O -0.983 6.983 14 O -0.990 6.990 15 N -0.859 5.859 16 C 0.168 3.832 17 H 0.039 0.961 18 C -0.205 4.205 19 C -0.583 4.583 20 H 0.082 0.918 21 C -0.182 4.182 22 N -0.550 5.550 23 Si 0.787 3.213 24 H -0.208 1.208 25 H -0.203 1.203 26 H -0.192 1.192 27 C -0.038 4.038 28 H 0.115 0.885 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.174 0.826 34 H 0.159 0.841 35 H 0.184 0.816 36 H 0.177 0.823 37 H 0.146 0.854 38 H 0.252 0.748 39 H 0.089 0.911 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -20.785 -7.914 7.705 23.537 hybrid contribution 0.703 0.678 -0.410 1.060 sum -20.081 -7.236 7.294 22.557 Atomic orbital electron populations 1.21818 0.90265 1.04295 1.03880 1.23269 0.97158 0.79390 1.02336 1.86502 1.23781 1.33463 1.83739 1.24109 0.80627 0.93098 0.71475 1.90716 1.61223 1.44514 1.46406 1.20455 0.89308 0.90539 1.10093 1.19623 0.95096 1.02882 0.93222 1.21718 0.94192 0.91705 0.98655 1.21578 0.95115 1.00775 0.98299 1.21107 1.00350 0.91400 0.92156 1.30610 1.06751 1.19464 1.19548 1.01212 0.72931 0.72829 0.73849 1.93490 1.65825 1.79240 1.59782 1.93515 1.43543 1.75770 1.86134 1.55303 1.61303 1.31723 1.37532 1.18346 0.86635 0.89272 0.88947 0.96110 1.22099 0.99077 1.00176 0.99161 1.21558 1.22143 1.20589 0.94000 0.91775 1.25658 0.97652 0.98481 0.96435 1.69966 1.35681 1.38478 1.10839 0.85567 0.78526 0.78649 0.78601 1.20816 1.20255 1.19243 1.20913 0.91479 0.91599 0.99783 0.88501 0.90866 0.91265 0.91976 0.91334 0.82590 0.84118 0.81565 0.82317 0.85416 0.74752 0.91137 0.94179 0.94360 0.92500 0.83926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.29 71.98 0.74 -0.52 16 2 C 0.05 0.78 6.19 71.98 0.45 1.22 16 3 O -0.36 -6.32 10.22 -51.42 -0.53 -6.85 16 4 C 0.46 9.54 7.95 71.24 0.57 10.10 16 5 O -0.54 -15.60 15.78 21.98 0.35 -15.25 16 6 C -0.07 -1.00 5.94 29.10 0.17 -0.82 16 7 C -0.11 -2.45 4.37 -19.86 -0.09 -2.53 16 8 C -0.04 -0.94 9.70 22.27 0.22 -0.73 16 9 C -0.14 -3.49 10.05 22.27 0.22 -3.27 16 10 C -0.03 -1.00 8.60 22.27 0.19 -0.81 16 11 C -0.67 -23.18 5.06 22.27 0.11 -23.07 16 12 S 2.70 108.01 5.72 -56.49 -0.32 107.68 16 13 O -0.99 -40.85 17.28 -128.00 -2.21 -43.06 16 14 O -1.00 -47.10 16.61 -128.00 -2.13 -49.22 16 15 N -1.10 -45.08 5.46 -172.53 -0.94 -46.02 16 16 C 0.27 13.20 2.89 44.24 0.13 13.33 16 17 H 0.02 1.14 7.50 -2.38 -0.02 1.12 16 18 C -0.15 -6.44 9.29 71.98 0.67 -5.78 16 19 C -0.54 -28.68 8.76 25.60 0.22 -28.46 16 20 H 0.06 3.29 7.81 -2.91 -0.02 3.26 16 21 C 0.02 0.96 5.30 84.66 0.45 1.41 16 22 N -0.91 -49.77 11.32 21.45 0.24 -49.52 16 23 Si 0.96 42.10 29.54 68.60 2.03 44.13 16 24 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 25 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 27 C -0.02 -0.53 9.18 22.27 0.20 -0.33 16 28 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 32 H 0.07 1.03 8.13 -2.38 -0.02 1.01 16 33 H 0.16 1.14 8.09 -2.39 -0.02 1.12 16 34 H 0.14 1.53 8.08 -2.39 -0.02 1.51 16 35 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 36 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 37 H 0.13 4.45 7.61 -2.91 -0.02 4.43 16 38 H 0.42 15.38 8.83 -96.75 -0.85 14.52 16 39 H 0.07 3.47 6.07 -2.39 -0.01 3.46 16 40 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.04 1.47 6.18 -2.39 -0.01 1.45 16 42 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 43 H 0.14 3.80 7.62 -2.91 -0.02 3.78 16 Total: -1.00 -74.57 377.90 0.92 -73.65 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.18 Total: 24.72 kcal Atomic # 6 Polarization: -44.51 SS G_CDS: 4.26 Total: -40.25 kcal Atomic # 7 Polarization: -94.85 SS G_CDS: -0.70 Total: -95.55 kcal Atomic # 8 Polarization: -109.86 SS G_CDS: -4.52 Total: -114.38 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Atomic # 16 Polarization: 108.01 SS G_CDS: -0.32 Total: 107.68 kcal Total: -74.57 0.92 -73.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351661034.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.667 kcal (2) G-P(sol) polarization free energy of solvation -74.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds