Wall clock time and date at job start Sat Apr 11 2020 06:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46777 * 2 1 4 4 C 1.34224 * 117.00077 * 179.97438 * 3 2 1 5 5 O 1.20833 * 120.00103 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00302 * 180.02562 * 4 3 2 7 7 C 1.50703 * 109.47225 * 180.02562 * 6 4 3 8 8 C 1.38258 * 119.99831 * 269.71926 * 7 6 4 9 9 C 1.38210 * 120.00099 * 179.78703 * 8 7 6 10 10 C 1.38259 * 119.99817 * 0.44857 * 9 8 7 11 11 C 1.38216 * 119.99927 * 359.80908 * 10 9 8 12 12 S 1.76200 * 120.00016 * 180.02562 * 11 10 9 13 13 O 1.42102 * 106.40053 * 23.51516 * 12 11 10 14 14 O 1.42095 * 106.40545 * 156.43722 * 12 11 10 15 15 N 1.65600 * 107.21687 * 269.97921 * 12 11 10 16 16 C 1.46501 * 120.00134 * 64.99547 * 15 12 11 17 17 C 1.53002 * 109.47106 * 165.00121 * 16 15 12 18 18 C 1.50697 * 109.47378 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99822 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00117 * 180.02562 * 18 17 16 21 21 N 1.31510 * 119.99897 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99890 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47250 * 89.99913 * 22 20 18 24 24 H 1.48505 * 109.46994 * 209.99931 * 22 20 18 25 25 H 1.48499 * 109.47365 * 329.99579 * 22 20 18 26 26 C 1.38213 * 120.00132 * 89.99868 * 7 6 4 27 27 H 1.09000 * 109.47486 * 299.99948 * 1 2 3 28 28 H 1.09001 * 109.47362 * 60.00671 * 1 2 3 29 29 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47486 * 240.00051 * 2 1 3 31 31 H 1.09001 * 109.47362 * 119.99329 * 2 1 3 32 32 H 1.09009 * 109.46972 * 299.99362 * 6 4 3 33 33 H 1.08995 * 109.47473 * 59.99636 * 6 4 3 34 34 H 1.08006 * 120.00042 * 0.02562 * 8 7 6 35 35 H 1.08000 * 119.99980 * 180.27724 * 9 8 7 36 36 H 1.07997 * 119.99795 * 179.83571 * 10 9 8 37 37 H 0.96997 * 119.99633 * 244.99708 * 15 12 11 38 38 H 1.08993 * 109.47297 * 285.00129 * 16 15 12 39 39 H 1.08998 * 109.46811 * 45.00314 * 16 15 12 40 40 H 1.09001 * 109.47175 * 300.00434 * 17 16 15 41 41 H 1.08998 * 109.46927 * 59.99628 * 17 16 15 42 42 H 0.97008 * 119.99786 * 180.02562 * 21 20 18 43 43 H 1.07999 * 120.00267 * 359.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9205 2.9376 0.0012 7 6 5.4255 2.8587 0.0010 8 6 6.1162 2.8279 1.1983 9 6 7.4961 2.7512 1.1983 10 6 8.1864 2.7146 0.0009 11 6 7.4962 2.7508 -1.1960 12 16 8.3759 2.7036 -2.7220 13 8 9.6284 2.0925 -2.4443 14 8 7.4668 2.2058 -3.6940 15 7 8.7039 4.2701 -3.1473 16 6 9.5961 5.0831 -2.3171 17 6 10.0281 6.3257 -3.0982 18 6 10.9463 7.1618 -2.2445 19 1 11.1965 6.8392 -1.2446 20 6 11.4662 8.3389 -2.7395 21 7 11.1612 8.7318 -3.9568 22 14 12.6039 9.3755 -1.6809 23 1 14.0095 8.9512 -1.9026 24 1 12.4548 10.8065 -2.0486 25 1 12.2516 9.1929 -0.2499 26 6 6.1156 2.8231 -1.1960 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.5850 3.4699 -0.8889 33 1 3.5843 3.4695 0.8911 34 1 5.5771 2.8599 2.1337 35 1 8.0354 2.7226 2.1336 36 1 9.2649 2.6574 0.0009 37 1 8.3053 4.6493 -3.9462 38 1 9.0723 5.3873 -1.4110 39 1 10.4761 4.4983 -2.0491 40 1 10.5519 6.0214 -4.0044 41 1 9.1481 6.9104 -3.3663 42 1 11.5273 9.5599 -4.3052 43 1 5.5763 2.8514 -2.1313 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352148798.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:26 Heat of formation + Delta-G solvation = -150.162315 kcal Electronic energy + Delta-G solvation = -26746.787850 eV Core-core repulsion = 22690.682085 eV Total energy + Delta-G solvation = -4056.105765 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.91199 -39.37159 -37.02805 -36.93040 -35.61748 -35.39578 -33.47142 -32.75215 -32.05926 -31.39141 -29.14294 -28.37127 -24.50327 -23.95362 -23.44350 -22.46317 -21.15529 -21.13131 -19.16121 -18.08071 -17.76988 -17.19884 -17.09108 -16.46956 -16.32225 -16.13356 -15.93327 -15.25680 -14.66905 -14.47497 -14.45601 -13.98295 -13.86603 -13.78630 -13.58222 -13.13994 -12.86801 -12.79187 -12.55522 -12.36014 -12.17383 -12.00820 -11.88696 -11.84395 -11.74883 -11.47007 -11.30171 -11.12965 -10.91913 -10.82348 -10.77325 -10.64154 -10.44210 -9.61319 -9.48596 -9.28375 -9.07619 -8.93045 -8.42338 -6.09371 -4.12810 0.54373 0.80403 1.05663 1.89088 2.32772 3.19864 3.28326 3.34811 3.37269 3.50119 3.98067 4.11608 4.39278 4.41234 4.46502 4.51154 4.57985 4.69968 4.75465 4.84318 4.84996 5.04884 5.06142 5.26040 5.27489 5.32241 5.34128 5.52811 5.56937 5.71768 5.76561 5.94512 6.04806 6.09860 6.15150 6.17817 6.46115 6.65654 6.70699 7.40061 7.42965 7.54738 7.63987 7.89157 8.26679 8.92970 9.51799 11.01981 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017038 B = 0.002352 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.956488 B =11900.102624 C =12343.876944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.360 6.360 4 C 0.460 3.540 5 O -0.496 6.496 6 C -0.071 4.071 7 C -0.107 4.107 8 C -0.050 4.050 9 C -0.138 4.138 10 C -0.011 4.011 11 C -0.669 4.669 12 S 2.692 3.308 13 O -0.958 6.958 14 O -0.970 6.970 15 N -1.110 6.110 16 C 0.118 3.882 17 C 0.018 3.982 18 C -0.524 4.524 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.892 5.892 22 Si 0.896 3.104 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.273 1.273 26 C -0.002 4.002 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.144 0.856 37 H 0.417 0.583 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.026 0.974 41 H 0.024 0.976 42 H 0.262 0.738 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.663 -13.514 10.432 26.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.278 6.278 4 C 0.302 3.698 5 O -0.383 6.383 6 C -0.109 4.109 7 C -0.108 4.108 8 C -0.068 4.068 9 C -0.157 4.157 10 C -0.030 4.030 11 C -0.755 4.755 12 S 2.781 3.219 13 O -0.948 6.948 14 O -0.960 6.960 15 N -0.872 5.872 16 C -0.007 4.007 17 C -0.021 4.021 18 C -0.563 4.563 19 H 0.077 0.923 20 C -0.143 4.143 21 N -0.531 5.531 22 Si 0.724 3.276 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.198 1.198 26 C -0.021 4.021 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.146 0.854 35 H 0.152 0.848 36 H 0.162 0.838 37 H 0.252 0.748 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.045 0.955 41 H 0.042 0.958 42 H 0.072 0.928 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -19.129 -14.529 10.030 26.031 hybrid contribution 0.108 0.996 0.854 1.316 sum -19.021 -13.533 10.884 25.756 Atomic orbital electron populations 1.21812 0.92492 1.03065 1.03590 1.23052 0.95416 0.80052 1.02765 1.86495 1.24454 1.32613 1.84192 1.23659 0.80578 0.92703 0.72835 1.90725 1.60321 1.42990 1.44234 1.20303 0.91772 0.91540 1.07261 1.19283 0.93261 1.04279 0.93943 1.21251 0.94658 0.93652 0.97280 1.21253 0.94188 1.01748 0.98498 1.21054 1.00638 0.90203 0.91092 1.31110 1.06065 1.17281 1.20999 1.01880 0.73668 0.73050 0.73316 1.93578 1.41319 1.74515 1.85410 1.93555 1.65655 1.78526 1.58292 1.55492 1.61425 1.32635 1.37629 1.21668 0.91173 0.94520 0.93334 1.19286 0.96922 0.90020 0.95874 1.21078 1.28597 1.05983 1.00639 0.92253 1.25005 0.96557 0.97668 0.95105 1.69958 1.44429 1.23055 1.15636 0.86530 0.81096 0.79385 0.80597 1.20549 1.21224 1.19808 1.20715 0.92207 0.90822 0.98346 0.91468 0.91343 0.90175 0.91055 0.91222 0.86197 0.86356 0.85420 0.84770 0.83842 0.74799 0.92933 0.91288 0.95532 0.95762 0.92827 0.84371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 10.29 37.16 0.38 -0.35 16 2 C 0.06 0.45 6.19 37.16 0.23 0.68 16 3 O -0.36 -3.27 10.22 -39.24 -0.40 -3.67 16 4 C 0.46 4.76 7.95 36.00 0.29 5.05 16 5 O -0.50 -6.87 15.78 -18.76 -0.30 -7.16 16 6 C -0.07 -0.57 5.94 -29.04 -0.17 -0.74 16 7 C -0.11 -1.18 4.37 -104.62 -0.46 -1.63 16 8 C -0.05 -0.52 9.70 -39.58 -0.38 -0.90 16 9 C -0.14 -1.53 10.05 -39.58 -0.40 -1.93 16 10 C -0.01 -0.14 9.52 -39.58 -0.38 -0.52 16 11 C -0.67 -9.56 5.95 -39.58 -0.24 -9.80 16 12 S 2.69 43.37 5.74 -107.50 -0.62 42.75 16 13 O -0.96 -17.94 16.75 -57.17 -0.96 -18.90 16 14 O -0.97 -17.08 17.28 -57.17 -0.99 -18.07 16 15 N -1.11 -18.29 6.00 -10.61 -0.06 -18.36 16 16 C 0.12 2.27 6.16 -4.04 -0.02 2.24 16 17 C 0.02 0.43 5.11 -27.88 -0.14 0.29 16 18 C -0.52 -14.05 9.11 -34.44 -0.31 -14.37 16 19 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -25.81 13.29 55.43 0.74 -25.08 16 22 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 C 0.00 -0.02 9.18 -39.58 -0.36 -0.39 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 31 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 32 H 0.12 0.73 8.09 -51.92 -0.42 0.31 16 33 H 0.12 0.61 8.08 -51.93 -0.42 0.19 16 34 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 35 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.14 1.79 7.62 -52.49 -0.40 1.39 16 37 H 0.42 6.33 8.65 -34.47 -0.30 6.03 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.07 1.33 7.75 -51.93 -0.40 0.93 16 40 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.14 1.62 7.62 -52.49 -0.40 1.22 16 LS Contribution 386.00 15.07 5.82 5.82 Total: -1.00 -35.75 386.00 -9.97 -45.72 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.11 Total: 1.89 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -2.07 Total: -20.84 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 0.67 Total: -43.43 kcal Atomic # 8 Polarization: -45.16 SS G_CDS: -2.64 Total: -47.81 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 43.37 SS G_CDS: -0.62 Total: 42.75 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.75 -9.97 -45.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352148798.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.441 kcal (2) G-P(sol) polarization free energy of solvation -35.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds