Wall clock time and date at job start Sat Apr 11 2020 06:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46777 * 2 1 4 4 C 1.34224 * 117.00077 * 179.97438 * 3 2 1 5 5 O 1.20833 * 120.00103 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00302 * 180.02562 * 4 3 2 7 7 C 1.50703 * 109.47225 * 180.02562 * 6 4 3 8 8 C 1.38258 * 119.99831 * 269.71926 * 7 6 4 9 9 C 1.38210 * 120.00099 * 179.78703 * 8 7 6 10 10 C 1.38259 * 119.99817 * 0.44857 * 9 8 7 11 11 C 1.38216 * 119.99927 * 359.80908 * 10 9 8 12 12 S 1.76200 * 120.00016 * 180.02562 * 11 10 9 13 13 O 1.42102 * 106.40053 * 23.51516 * 12 11 10 14 14 O 1.42095 * 106.40545 * 156.43722 * 12 11 10 15 15 N 1.65600 * 107.21687 * 269.97921 * 12 11 10 16 16 C 1.46501 * 120.00134 * 64.99547 * 15 12 11 17 17 C 1.53002 * 109.47106 * 165.00121 * 16 15 12 18 18 C 1.50697 * 109.47378 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99822 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00117 * 180.02562 * 18 17 16 21 21 N 1.31510 * 119.99897 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99890 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47250 * 89.99913 * 22 20 18 24 24 H 1.48505 * 109.46994 * 209.99931 * 22 20 18 25 25 H 1.48499 * 109.47365 * 329.99579 * 22 20 18 26 26 C 1.38213 * 120.00132 * 89.99868 * 7 6 4 27 27 H 1.09000 * 109.47486 * 299.99948 * 1 2 3 28 28 H 1.09001 * 109.47362 * 60.00671 * 1 2 3 29 29 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47486 * 240.00051 * 2 1 3 31 31 H 1.09001 * 109.47362 * 119.99329 * 2 1 3 32 32 H 1.09009 * 109.46972 * 299.99362 * 6 4 3 33 33 H 1.08995 * 109.47473 * 59.99636 * 6 4 3 34 34 H 1.08006 * 120.00042 * 0.02562 * 8 7 6 35 35 H 1.08000 * 119.99980 * 180.27724 * 9 8 7 36 36 H 1.07997 * 119.99795 * 179.83571 * 10 9 8 37 37 H 0.96997 * 119.99633 * 244.99708 * 15 12 11 38 38 H 1.08993 * 109.47297 * 285.00129 * 16 15 12 39 39 H 1.08998 * 109.46811 * 45.00314 * 16 15 12 40 40 H 1.09001 * 109.47175 * 300.00434 * 17 16 15 41 41 H 1.08998 * 109.46927 * 59.99628 * 17 16 15 42 42 H 0.97008 * 119.99786 * 180.02562 * 21 20 18 43 43 H 1.07999 * 120.00267 * 359.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9205 2.9376 0.0012 7 6 5.4255 2.8587 0.0010 8 6 6.1162 2.8279 1.1983 9 6 7.4961 2.7512 1.1983 10 6 8.1864 2.7146 0.0009 11 6 7.4962 2.7508 -1.1960 12 16 8.3759 2.7036 -2.7220 13 8 9.6284 2.0925 -2.4443 14 8 7.4668 2.2058 -3.6940 15 7 8.7039 4.2701 -3.1473 16 6 9.5961 5.0831 -2.3171 17 6 10.0281 6.3257 -3.0982 18 6 10.9463 7.1618 -2.2445 19 1 11.1965 6.8392 -1.2446 20 6 11.4662 8.3389 -2.7395 21 7 11.1612 8.7318 -3.9568 22 14 12.6039 9.3755 -1.6809 23 1 14.0095 8.9512 -1.9026 24 1 12.4548 10.8065 -2.0486 25 1 12.2516 9.1929 -0.2499 26 6 6.1156 2.8231 -1.1960 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.5850 3.4699 -0.8889 33 1 3.5843 3.4695 0.8911 34 1 5.5771 2.8599 2.1337 35 1 8.0354 2.7226 2.1336 36 1 9.2649 2.6574 0.0009 37 1 8.3053 4.6493 -3.9462 38 1 9.0723 5.3873 -1.4110 39 1 10.4761 4.4983 -2.0491 40 1 10.5519 6.0214 -4.0044 41 1 9.1481 6.9104 -3.3663 42 1 11.5273 9.5599 -4.3052 43 1 5.5763 2.8514 -2.1313 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352148798.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:25 Heat of formation + Delta-G solvation = -174.347299 kcal Electronic energy + Delta-G solvation = -26747.836590 eV Core-core repulsion = 22690.682085 eV Total energy + Delta-G solvation = -4057.154505 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.68686 -40.22441 -38.40680 -37.71881 -37.03918 -36.98671 -34.71881 -34.26564 -32.58928 -32.29607 -30.99506 -29.13394 -26.40858 -24.58639 -24.38215 -23.23124 -22.93974 -21.91506 -20.46029 -18.97641 -18.81462 -18.55442 -18.16716 -17.81143 -17.24736 -17.15265 -17.07358 -16.51212 -16.29495 -15.59315 -15.49006 -15.26178 -15.13696 -14.55947 -14.41452 -14.38084 -13.76559 -13.59722 -13.43218 -13.36907 -13.29863 -13.27646 -13.23737 -13.17852 -12.97006 -12.83029 -12.52300 -12.44566 -12.34498 -12.31036 -11.78082 -11.64592 -11.54800 -11.48410 -11.29582 -10.61323 -10.41091 -10.29872 -9.96337 -8.18810 -6.29275 -0.66739 -0.22110 0.16898 1.13440 1.45017 1.46039 1.56591 1.65003 2.01306 2.44264 2.48341 2.75519 3.16251 3.22042 3.48947 3.77561 3.83901 3.96574 3.99152 4.07207 4.15056 4.19248 4.22222 4.33961 4.41089 4.53251 4.56047 4.72101 4.80535 4.85149 4.91361 4.92043 4.97451 5.02561 5.14722 5.21486 5.29798 5.44461 5.51871 5.65405 5.80278 5.82885 6.03338 6.24370 6.68682 6.86425 7.39842 8.93175 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017038 B = 0.002352 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.956488 B =11900.102624 C =12343.876944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.359 6.359 4 C 0.462 3.538 5 O -0.539 6.539 6 C -0.069 4.069 7 C -0.109 4.109 8 C -0.046 4.046 9 C -0.139 4.139 10 C -0.033 4.033 11 C -0.680 4.680 12 S 2.708 3.292 13 O -0.989 6.989 14 O -0.988 6.988 15 N -1.110 6.110 16 C 0.133 3.867 17 C 0.020 3.980 18 C -0.541 4.541 19 H 0.069 0.931 20 C 0.001 3.999 21 N -0.931 5.931 22 Si 0.965 3.035 23 H -0.276 1.276 24 H -0.284 1.284 25 H -0.259 1.259 26 C -0.021 4.021 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.140 0.860 33 H 0.156 0.844 34 H 0.165 0.835 35 H 0.163 0.837 36 H 0.143 0.857 37 H 0.422 0.578 38 H 0.071 0.929 39 H 0.067 0.933 40 H -0.001 1.001 41 H 0.010 0.990 42 H 0.263 0.737 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.160 -13.147 13.201 28.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 O -0.276 6.276 4 C 0.307 3.693 5 O -0.429 6.429 6 C -0.106 4.106 7 C -0.110 4.110 8 C -0.064 4.064 9 C -0.157 4.157 10 C -0.052 4.052 11 C -0.769 4.769 12 S 2.801 3.199 13 O -0.979 6.979 14 O -0.979 6.979 15 N -0.871 5.871 16 C 0.008 3.992 17 C -0.019 4.019 18 C -0.580 4.580 19 H 0.087 0.913 20 C -0.197 4.197 21 N -0.571 5.571 22 Si 0.790 3.210 23 H -0.202 1.202 24 H -0.210 1.210 25 H -0.183 1.183 26 C -0.041 4.041 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.115 0.885 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.158 0.842 33 H 0.173 0.827 34 H 0.182 0.818 35 H 0.181 0.819 36 H 0.161 0.839 37 H 0.257 0.743 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.018 0.982 41 H 0.028 0.972 42 H 0.072 0.928 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -20.628 -14.161 12.761 28.087 hybrid contribution 0.455 0.809 0.033 0.929 sum -20.173 -13.352 12.793 27.366 Atomic orbital electron populations 1.21822 0.90332 1.04301 1.03865 1.23269 0.97121 0.79347 1.02363 1.86503 1.23844 1.33504 1.83704 1.24114 0.80628 0.93118 0.71477 1.90715 1.61196 1.44499 1.46441 1.20468 0.89563 0.90520 1.10046 1.19636 0.95031 1.02912 0.93413 1.21762 0.94578 0.91519 0.98537 1.21641 0.94904 1.00489 0.98691 1.21249 1.00960 0.91272 0.91714 1.30619 1.06584 1.20049 1.19681 1.01079 0.72965 0.72222 0.73644 1.93530 1.43248 1.75117 1.86045 1.93522 1.65836 1.78675 1.59850 1.55328 1.61353 1.32454 1.37941 1.21333 0.91856 0.92682 0.93370 1.19165 0.95767 0.91752 0.95239 1.21563 1.28737 1.06382 1.01339 0.91256 1.25939 0.98253 0.99175 0.96360 1.70090 1.45849 1.23659 1.17454 0.85440 0.78786 0.77393 0.79377 1.20186 1.21016 1.18301 1.20950 0.91845 0.91540 0.99732 0.90889 0.91296 0.88495 0.91934 0.91277 0.84220 0.82671 0.81755 0.81914 0.83922 0.74272 0.91055 0.91503 0.98210 0.97199 0.92781 0.84014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.29 71.98 0.74 -0.39 16 2 C 0.05 0.72 6.19 71.98 0.45 1.17 16 3 O -0.36 -5.86 10.22 -51.35 -0.52 -6.38 16 4 C 0.46 8.69 7.95 71.23 0.57 9.26 16 5 O -0.54 -14.45 15.78 21.94 0.35 -14.11 16 6 C -0.07 -0.88 5.94 29.10 0.17 -0.71 16 7 C -0.11 -2.13 4.37 -19.86 -0.09 -2.22 16 8 C -0.05 -0.79 9.70 22.27 0.22 -0.58 16 9 C -0.14 -2.71 10.05 22.27 0.22 -2.49 16 10 C -0.03 -0.83 9.52 22.27 0.21 -0.62 16 11 C -0.68 -19.22 5.95 22.27 0.13 -19.08 16 12 S 2.71 89.22 5.74 -56.49 -0.32 88.89 16 13 O -0.99 -38.06 16.75 -128.00 -2.14 -40.21 16 14 O -0.99 -35.66 17.28 -128.00 -2.21 -37.87 16 15 N -1.11 -37.38 6.00 -187.49 -1.12 -38.51 16 16 C 0.13 5.16 6.16 86.38 0.53 5.69 16 17 C 0.02 0.97 5.11 29.85 0.15 1.12 16 18 C -0.54 -29.15 9.11 25.60 0.23 -28.91 16 19 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 20 C 0.00 0.05 5.46 84.65 0.46 0.52 16 21 N -0.93 -54.75 13.29 21.45 0.28 -54.47 16 22 Si 0.97 42.66 29.54 68.60 2.03 44.69 16 23 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 25 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 26 C -0.02 -0.53 9.18 22.27 0.20 -0.33 16 27 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.06 0.96 8.13 -2.39 -0.02 0.94 16 31 H 0.07 0.95 8.13 -2.39 -0.02 0.93 16 32 H 0.14 1.26 8.09 -2.38 -0.02 1.24 16 33 H 0.16 0.85 8.08 -2.39 -0.02 0.83 16 34 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 35 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 36 H 0.14 3.53 7.62 -2.91 -0.02 3.51 16 37 H 0.42 13.26 8.65 -96.75 -0.84 12.42 16 38 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.07 2.61 7.75 -2.39 -0.02 2.60 16 40 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 41 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.26 14.63 8.31 -92.70 -0.77 13.85 16 43 H 0.14 3.28 7.62 -2.91 -0.02 3.26 16 Total: -1.00 -78.20 386.00 0.72 -77.48 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 0.19 Total: 18.05 kcal Atomic # 6 Polarization: -41.78 SS G_CDS: 4.21 Total: -37.57 kcal Atomic # 7 Polarization: -92.13 SS G_CDS: -0.84 Total: -92.97 kcal Atomic # 8 Polarization: -94.03 SS G_CDS: -4.53 Total: -98.57 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: 89.22 SS G_CDS: -0.32 Total: 88.89 kcal Total: -78.20 0.72 -77.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352148798.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.871 kcal (2) G-P(sol) polarization free energy of solvation -78.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds