Wall clock time and date at job start Sat Apr 11 2020 06:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.28444 * 124.15731 * 2 1 4 4 C 1.32140 * 111.39263 * 180.27326 * 3 2 1 5 5 C 1.40931 * 135.42285 * 179.73467 * 4 3 2 6 6 C 1.35823 * 119.54717 * 180.02562 * 5 4 3 7 7 C 1.39486 * 121.83664 * 0.02562 * 6 5 4 8 8 C 1.36070 * 121.57414 * 0.02562 * 7 6 5 9 9 C 1.40060 * 119.46857 * 359.96271 * 8 7 6 10 10 C 1.36196 * 124.15678 * 179.81191 * 2 1 3 11 11 C 1.46424 * 126.85570 * 0.02562 * 10 2 1 12 12 O 1.21737 * 119.99651 * 100.97838 * 11 10 2 13 13 N 1.34777 * 120.00080 * 280.97959 * 11 10 2 14 14 C 1.46494 * 119.99854 * 184.80509 * 13 11 10 15 15 C 1.50702 * 109.47161 * 269.99694 * 14 13 11 16 16 H 1.08007 * 119.99900 * 0.02562 * 15 14 13 17 17 C 1.37870 * 120.00349 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00206 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00180 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47296 * 90.00077 * 19 17 15 21 21 H 1.48501 * 109.47507 * 210.00318 * 19 17 15 22 22 H 1.48501 * 109.47049 * 330.00435 * 19 17 15 23 23 C 1.46496 * 119.99687 * 4.79972 * 13 11 10 24 24 C 1.52995 * 109.47226 * 264.06520 * 23 13 11 25 25 F 1.39905 * 109.46989 * 54.91331 * 24 23 13 26 26 F 1.39902 * 109.47087 * 174.90827 * 24 23 13 27 27 F 1.39896 * 109.47660 * 294.91174 * 24 23 13 28 28 H 1.08989 * 109.47157 * 275.14894 * 1 2 3 29 29 H 1.09005 * 109.46529 * 35.14756 * 1 2 3 30 30 H 1.08995 * 109.46947 * 155.14278 * 1 2 3 31 31 H 1.07996 * 120.22883 * 359.97438 * 5 4 3 32 32 H 1.07994 * 119.08604 * 179.97438 * 6 5 4 33 33 H 1.08004 * 119.21531 * 180.02562 * 7 6 5 34 34 H 1.07997 * 120.27137 * 180.02562 * 8 7 6 35 35 H 1.09004 * 109.47316 * 29.99571 * 14 13 11 36 36 H 1.08996 * 109.47538 * 149.99914 * 14 13 11 37 37 H 0.96994 * 119.99865 * 179.97438 * 18 17 15 38 38 H 1.09006 * 109.46491 * 144.07295 * 23 13 11 39 39 H 1.08995 * 109.47441 * 24.07109 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.1862 1.0629 0.0000 4 6 3.4750 0.7709 -0.0059 5 6 4.6725 1.5138 -0.0132 6 6 5.8646 0.8628 -0.0184 7 6 5.9424 -0.5299 -0.0173 8 6 4.8246 -1.3059 -0.0115 9 6 3.5632 -0.6971 -0.0056 10 6 2.2298 -1.1270 0.0037 11 6 1.7533 -2.5116 0.0077 12 8 1.7456 -3.1556 -1.0253 13 7 1.3235 -3.0730 1.1551 14 6 0.9463 -4.4883 1.1816 15 6 -0.5200 -4.6236 0.8612 16 1 -1.1117 -3.7433 0.6576 17 6 -1.1060 -5.8711 0.8267 18 7 -0.3854 -6.9432 1.0741 19 14 -2.9237 -6.0386 0.4302 20 1 -3.0985 -6.1896 -1.0368 21 1 -3.4727 -7.2338 1.1197 22 1 -3.6450 -4.8256 0.8923 23 6 1.2335 -2.2679 2.3757 24 6 2.5025 -2.4603 3.2083 25 9 3.6234 -2.1651 2.4248 26 9 2.4686 -1.6047 4.3146 27 9 2.5762 -3.7867 3.6466 28 1 -0.3633 0.0922 1.0234 29 1 -0.3632 0.8404 -0.5917 30 1 -0.3633 -0.9324 -0.4320 31 1 4.6427 2.5934 -0.0154 32 1 6.7776 1.4395 -0.0245 33 1 6.9129 -1.0036 -0.0213 34 1 4.9094 -2.3825 -0.0103 35 1 1.5318 -5.0343 0.4418 36 1 1.1408 -4.8977 2.1729 37 1 -0.7978 -7.8207 1.0502 38 1 0.3667 -2.5840 2.9562 39 1 1.1290 -1.2159 2.1102 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356781593.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:32 Heat of formation + Delta-G solvation = -77.842724 kcal Electronic energy + Delta-G solvation = -31327.053756 eV Core-core repulsion = 26629.076062 eV Total energy + Delta-G solvation = -4697.977693 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.109 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.82641 -47.38033 -47.26261 -42.43485 -39.14563 -37.62763 -35.54802 -33.04796 -32.67528 -31.84566 -29.68448 -29.35899 -27.65300 -27.03752 -24.05075 -23.38147 -22.90989 -22.23031 -21.22835 -19.11460 -18.36042 -18.27897 -17.72348 -17.46807 -17.04906 -16.58212 -16.30741 -15.97493 -15.53578 -14.80151 -14.37295 -14.23500 -14.19514 -14.16587 -14.03038 -13.74911 -13.67169 -13.48139 -13.45295 -13.27314 -13.03921 -13.00064 -12.51199 -12.29569 -12.02821 -11.78630 -11.67095 -11.65270 -11.43029 -11.10611 -10.78879 -10.39610 -10.24243 -10.09128 -9.93864 -9.61949 -8.60399 -8.59727 -8.27924 -7.63469 -6.21835 -4.28901 0.62164 1.73881 2.10421 2.43952 2.68812 3.13879 3.20511 3.24586 3.27787 3.31193 3.91389 4.02325 4.14116 4.17233 4.19880 4.29296 4.62648 4.88582 4.90542 4.96476 5.04073 5.12008 5.13834 5.27652 5.27839 5.38223 5.43827 5.61239 5.75764 6.07752 6.42928 6.49190 6.60030 6.66411 6.70384 6.98443 7.01159 7.19192 7.69997 7.77822 7.96116 7.97210 8.37886 8.73044 9.36790 10.86586 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.014053 B = 0.004487 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.034528 B = 6238.426079 C = 6918.882580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.225 5.225 3 N -0.294 5.294 4 C 0.059 3.941 5 C -0.084 4.084 6 C -0.097 4.097 7 C -0.138 4.138 8 C -0.046 4.046 9 C -0.119 4.119 10 C -0.013 4.013 11 C 0.587 3.413 12 O -0.494 6.494 13 N -0.581 5.581 14 C 0.240 3.760 15 C -0.537 4.537 16 H 0.059 0.941 17 C 0.066 3.934 18 N -0.888 5.888 19 Si 0.901 3.099 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.274 1.274 23 C 0.073 3.927 24 C 0.429 3.571 25 F -0.176 7.176 26 F -0.188 7.188 27 F -0.173 7.173 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.052 0.948 36 H 0.048 0.952 37 H 0.266 0.734 38 H 0.133 0.867 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.605 14.607 2.790 16.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.009 5.009 3 N -0.130 5.130 4 C -0.086 4.086 5 C -0.105 4.105 6 C -0.119 4.119 7 C -0.158 4.158 8 C -0.066 4.066 9 C -0.127 4.127 10 C -0.150 4.150 11 C 0.370 3.630 12 O -0.366 6.366 13 N -0.313 5.313 14 C 0.123 3.877 15 C -0.575 4.575 16 H 0.078 0.922 17 C -0.137 4.137 18 N -0.525 5.525 19 Si 0.728 3.272 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.055 4.055 24 C 0.373 3.627 25 F -0.157 7.157 26 F -0.169 7.169 27 F -0.155 7.155 28 H 0.113 0.887 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.151 0.849 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.639 14.922 2.230 16.107 hybrid contribution -0.368 -0.831 0.047 0.910 sum 5.271 14.091 2.277 15.216 Atomic orbital electron populations 1.22495 0.72372 1.06608 1.05376 1.45772 1.08176 1.01795 1.45114 1.73378 1.03407 1.10746 1.25494 1.20578 0.91031 0.92300 1.04669 1.19802 0.88589 0.98879 1.03219 1.20571 0.97071 0.94500 0.99759 1.20598 0.98086 0.93625 1.03450 1.20103 0.89749 0.99724 0.97028 1.19271 0.91649 0.93683 1.08140 1.21421 0.91510 0.89115 1.12907 1.16792 0.78092 0.83719 0.84401 1.90905 1.52203 1.62619 1.30828 1.48236 1.63162 1.14127 1.05727 1.19669 0.96498 0.71995 0.99557 1.21279 0.93656 0.93039 1.49556 0.92240 1.24916 0.98580 0.95493 0.94748 1.69922 1.36219 0.98343 1.48038 0.86466 0.84347 0.77725 0.78678 1.20446 1.21001 1.19858 1.22626 0.94878 0.98940 0.89007 1.21419 0.87852 0.74264 0.79125 1.93231 1.55471 1.92992 1.74033 1.93157 1.96797 1.71010 1.55986 1.93224 1.96778 1.35290 1.90161 0.88668 0.87620 0.87591 0.85575 0.85745 0.85929 0.85891 0.93050 0.93379 0.92382 0.84936 0.88150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.78 10.54 59.85 0.63 1.41 16 2 N -0.23 -3.37 3.28 -63.75 -0.21 -3.58 16 3 N -0.29 -4.55 11.88 33.21 0.39 -4.16 16 4 C 0.06 0.92 7.53 -83.13 -0.63 0.30 16 5 C -0.08 -1.06 10.09 -39.43 -0.40 -1.46 16 6 C -0.10 -1.09 9.89 -39.98 -0.40 -1.48 16 7 C -0.14 -1.71 9.92 -39.90 -0.40 -2.11 16 8 C -0.05 -0.70 8.86 -39.68 -0.35 -1.05 16 9 C -0.12 -1.99 5.33 -104.93 -0.56 -2.55 16 10 C -0.01 -0.23 4.49 -81.93 -0.37 -0.60 16 11 C 0.59 11.76 6.44 -12.97 -0.08 11.68 16 12 O -0.49 -11.89 16.74 5.16 0.09 -11.80 16 13 N -0.58 -11.29 2.34 -176.70 -0.41 -11.70 16 14 C 0.24 5.73 4.99 -5.20 -0.03 5.71 16 15 C -0.54 -13.73 9.39 -34.44 -0.32 -14.05 16 16 H 0.06 1.46 7.81 -52.48 -0.41 1.05 16 17 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -24.80 13.29 55.43 0.74 -24.06 16 19 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 23 C 0.07 1.13 5.34 -4.05 -0.02 1.11 16 24 C 0.43 6.80 3.30 37.16 0.12 6.92 16 25 F -0.18 -2.93 13.86 2.25 0.03 -2.90 16 26 F -0.19 -2.74 17.32 2.25 0.04 -2.70 16 27 F -0.17 -3.05 15.88 2.25 0.04 -3.01 16 28 H 0.09 0.82 7.80 -51.94 -0.41 0.41 16 29 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.11 1.27 7.55 -51.93 -0.39 0.88 16 31 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 34 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 35 H 0.05 1.40 7.49 -51.93 -0.39 1.01 16 36 H 0.05 1.17 6.79 -51.93 -0.35 0.82 16 37 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.13 1.86 8.12 -51.93 -0.42 1.44 16 39 H 0.10 1.35 5.45 -51.93 -0.28 1.07 16 LS Contribution 346.69 15.07 5.22 5.22 Total: -1.00 -31.94 346.69 -5.89 -37.83 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -3.90 Total: 0.12 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -2.89 Total: 5.47 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: 0.51 Total: -43.50 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 9 Polarization: -8.72 SS G_CDS: 0.11 Total: -8.62 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.94 -5.89 -37.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356781593.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.017 kcal (2) G-P(sol) polarization free energy of solvation -31.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds