Wall clock time and date at job start Sat Apr 11 2020 06:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.38351 * 127.15092 * 2 1 4 4 C 1.39771 * 126.56590 * 359.97438 * 3 2 1 5 5 H 1.08004 * 120.00111 * 7.90962 * 4 3 2 6 6 C 1.40084 * 120.00218 * 187.90579 * 4 3 2 7 7 N 1.30817 * 119.99946 * 191.23483 * 6 4 3 8 8 Si 1.86798 * 119.99751 * 11.23165 * 6 4 3 9 9 H 1.48506 * 109.46877 * 270.00124 * 8 6 4 10 10 H 1.48499 * 109.47207 * 29.99996 * 8 6 4 11 11 H 1.48496 * 109.47289 * 150.00071 * 8 6 4 12 12 N 1.33095 * 106.86805 * 179.73687 * 3 2 1 13 13 N 1.28516 * 109.75073 * 0.23892 * 12 3 2 14 14 C 1.32394 * 110.20034 * 0.02562 * 13 12 3 15 15 S 1.76200 * 126.25874 * 180.02562 * 14 13 12 16 16 C 1.81001 * 99.99813 * 359.97384 * 15 14 13 17 17 C 1.50703 * 109.47000 * 180.02562 * 16 15 14 18 18 N 1.30516 * 125.71195 * 269.68845 * 17 16 15 19 19 C 1.34132 * 109.34963 * 179.83434 * 18 17 16 20 20 C 1.34656 * 108.19403 * 0.43188 * 19 18 17 21 21 N 1.35828 * 125.72235 * 89.99919 * 17 16 15 22 22 C 1.40234 * 126.47081 * 359.96444 * 21 17 16 23 23 C 1.38817 * 120.06610 * 309.72661 * 22 21 17 24 24 C 1.38128 * 119.93719 * 179.71918 * 23 22 21 25 25 C 1.38270 * 120.06328 * 0.55845 * 24 23 22 26 26 C 1.38283 * 120.13002 * 359.71919 * 25 24 23 27 27 C 1.38122 * 120.06390 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.46941 * 90.00466 * 1 2 3 29 29 H 1.09008 * 109.47284 * 209.99945 * 1 2 3 30 30 H 1.08993 * 109.47266 * 330.00347 * 1 2 3 31 31 H 0.96998 * 119.99838 * 354.77302 * 7 6 4 32 32 H 1.09004 * 109.47482 * 299.99714 * 16 15 14 33 33 H 1.08994 * 109.47277 * 59.99785 * 16 15 14 34 34 H 1.08000 * 125.90004 * 180.17812 * 19 18 17 35 35 H 1.08000 * 126.58227 * 179.70677 * 20 19 18 36 36 H 1.08009 * 120.03133 * 359.97416 * 23 22 21 37 37 H 1.07996 * 119.97059 * 180.27049 * 24 23 22 38 38 H 1.08001 * 119.93698 * 179.69883 * 25 24 23 39 39 H 1.08000 * 119.96734 * 180.02562 * 26 25 24 40 40 H 1.07996 * 120.03364 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3005 1.1027 0.0000 4 6 1.9086 2.4444 -0.0005 5 1 0.8679 2.7030 0.1278 6 6 2.8657 3.4536 -0.1673 7 7 2.5435 4.7028 0.0494 8 14 4.6020 3.0155 -0.6990 9 1 5.4387 2.7639 0.5018 10 1 4.5678 1.7943 -1.5433 11 1 5.1797 4.1399 -1.4782 12 7 3.5489 0.6414 0.0058 13 7 3.5370 -0.6438 0.0043 14 6 2.2903 -1.0894 -0.0031 15 16 1.7873 -2.7780 -0.0072 16 6 3.4058 -3.5881 0.0007 17 6 3.2191 -5.0835 -0.0022 18 7 3.1246 -5.8415 1.0561 19 6 2.9616 -7.1174 0.6758 20 6 2.9635 -7.1585 -0.6702 21 7 3.1269 -5.8691 -1.1064 22 6 3.1866 -5.4418 -2.4408 23 6 2.3883 -4.3907 -2.8708 24 6 2.4535 -3.9682 -4.1843 25 6 3.3044 -4.5987 -5.0733 26 6 4.0966 -5.6498 -4.6492 27 6 4.0403 -6.0725 -3.3355 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5137 31 1 1.6246 4.9386 0.2514 32 1 3.9655 -3.2906 -0.8862 33 1 3.9560 -3.2920 0.8937 34 1 2.8521 -7.9657 1.3351 35 1 2.8575 -8.0383 -1.2874 36 1 1.7198 -3.9010 -2.1780 37 1 1.8359 -3.1477 -4.5184 38 1 3.3502 -4.2698 -6.1010 39 1 4.7606 -6.1401 -5.3457 40 1 4.6595 -6.8932 -3.0047 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357065495.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:35 Heat of formation + Delta-G solvation = 138.987442 kcal Electronic energy + Delta-G solvation = -26065.336983 eV Core-core repulsion = 22393.664114 eV Total energy + Delta-G solvation = -3671.672869 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.101 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.45054 -42.85715 -40.02306 -35.94036 -35.42790 -35.14505 -33.27245 -32.02663 -31.87481 -30.42024 -28.60963 -28.13435 -27.13218 -24.26992 -23.96155 -23.35470 -22.25562 -22.08137 -21.07440 -20.19682 -19.24663 -18.23933 -17.43545 -17.27749 -16.96085 -16.79180 -16.10871 -15.85847 -15.82237 -15.55692 -15.31832 -14.90978 -14.74261 -14.63928 -14.52586 -14.26376 -14.13063 -14.02417 -13.77008 -13.55402 -13.09059 -12.88189 -12.62220 -12.26999 -12.13927 -11.90461 -11.58196 -11.42789 -11.38756 -11.14861 -10.90123 -10.56784 -10.36993 -10.05543 -9.76547 -9.50291 -9.44111 -8.76096 -6.85926 -0.25019 0.12143 0.28910 0.81351 0.96782 1.21507 1.50878 1.57546 1.60899 1.95046 2.06536 2.08206 2.20756 2.39602 2.64554 3.03243 3.03980 3.52505 3.82220 3.88310 3.91155 4.01940 4.18076 4.25255 4.31905 4.36521 4.37623 4.46262 4.47513 4.54366 4.59891 4.67629 4.71253 4.94843 4.98737 5.22337 5.32386 5.36714 5.37246 5.46652 5.66436 5.67578 5.74943 6.00373 6.15932 6.39185 6.56781 6.89972 7.91927 8.14214 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.014040 B = 0.003388 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.850973 B = 8262.491764 C = 9111.422881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.512 5.512 3 C 0.327 3.673 4 C -0.509 4.509 5 H 0.084 0.916 6 C 0.045 3.955 7 N -0.822 5.822 8 Si 1.135 2.865 9 H -0.288 1.288 10 H -0.272 1.272 11 H -0.294 1.294 12 N -0.439 5.439 13 N -0.307 5.307 14 C 0.075 3.925 15 S 0.031 5.969 16 C -0.007 4.007 17 C 0.198 3.802 18 N -0.494 5.494 19 C -0.039 4.039 20 C -0.026 4.026 21 N -0.401 5.401 22 C 0.086 3.914 23 C -0.134 4.134 24 C -0.113 4.113 25 C -0.109 4.109 26 C -0.103 4.103 27 C -0.113 4.113 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.287 0.713 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.204 0.796 35 H 0.218 0.782 36 H 0.128 0.872 37 H 0.139 0.861 38 H 0.156 0.844 39 H 0.164 0.836 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.932 -23.922 -10.479 26.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.212 5.212 3 C 0.080 3.920 4 C -0.550 4.550 5 H 0.102 0.898 6 C -0.176 4.176 7 N -0.448 5.448 8 Si 0.963 3.037 9 H -0.215 1.215 10 H -0.199 1.199 11 H -0.223 1.223 12 N -0.288 5.288 13 N -0.150 5.150 14 C -0.300 4.300 15 S 0.258 5.742 16 C -0.157 4.157 17 C -0.062 4.062 18 N -0.214 5.214 19 C -0.187 4.187 20 C -0.158 4.158 21 N -0.081 5.081 22 C -0.004 4.004 23 C -0.154 4.154 24 C -0.131 4.131 25 C -0.127 4.127 26 C -0.121 4.121 27 C -0.132 4.132 28 H 0.100 0.900 29 H 0.113 0.887 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.119 0.881 33 H 0.126 0.874 34 H 0.221 0.779 35 H 0.235 0.765 36 H 0.146 0.854 37 H 0.157 0.843 38 H 0.173 0.827 39 H 0.182 0.818 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.066 -23.395 -9.981 25.457 hybrid contribution -2.074 0.352 0.145 2.108 sum -3.139 -23.042 -9.836 25.250 Atomic orbital electron populations 1.21920 0.74738 1.04519 1.03903 1.46182 1.08310 1.04021 1.62688 1.21730 0.85576 0.89780 0.94915 1.19377 0.97935 0.87564 1.50142 0.89817 1.27737 1.08587 0.91540 0.89720 1.70651 1.22755 1.19136 1.32218 0.82452 0.69944 0.73230 0.78088 1.21495 1.19869 1.22304 1.74111 1.17163 1.01943 1.35559 1.74213 1.16986 1.05122 1.18657 1.26346 0.90483 0.95512 1.17653 1.84567 1.09228 0.86361 1.94080 1.21372 0.98095 0.88344 1.07904 1.22125 1.08985 0.93028 0.82077 1.70236 1.18584 1.04187 1.28383 1.22941 1.07395 0.94476 0.93848 1.23504 1.08268 0.87052 0.96970 1.43102 1.52316 1.07947 1.04729 1.17974 1.00825 0.99601 0.82042 1.21650 0.99156 0.96655 0.97918 1.21341 0.99520 1.00024 0.92258 1.21704 0.94701 0.95174 1.01097 1.21457 0.99004 0.96657 0.94963 1.21312 0.97198 1.00963 0.93718 0.89959 0.88674 0.89772 0.90208 0.88144 0.87387 0.77916 0.76508 0.85438 0.84335 0.82670 0.81834 0.83543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.05 10.89 127.77 1.39 4.44 16 2 N -0.51 -23.17 3.26 -543.62 -1.77 -24.94 16 3 C 0.33 17.42 7.21 133.23 0.96 18.38 16 4 C -0.51 -27.42 9.47 23.09 0.22 -27.20 16 5 H 0.08 4.36 7.46 -2.91 -0.02 4.34 16 6 C 0.04 2.42 5.52 85.29 0.47 2.89 16 7 N -0.82 -44.26 13.65 21.86 0.30 -43.96 16 8 Si 1.14 56.99 26.40 68.60 1.81 58.80 16 9 H -0.29 -14.84 7.11 99.48 0.71 -14.14 16 10 H -0.27 -14.34 6.25 99.48 0.62 -13.72 16 11 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 12 N -0.44 -24.63 7.50 -55.02 -0.41 -25.05 16 13 N -0.31 -15.83 11.62 -56.17 -0.65 -16.48 16 14 C 0.07 3.34 8.09 179.18 1.45 4.79 16 15 S 0.03 1.04 19.48 -56.49 -1.10 -0.06 16 16 C -0.01 -0.23 4.93 71.24 0.35 0.12 16 17 C 0.20 5.88 7.04 137.87 0.97 6.85 16 18 N -0.49 -14.91 11.25 -187.56 -2.11 -17.02 16 19 C -0.04 -0.84 11.85 83.52 0.99 0.15 16 20 C -0.03 -0.47 11.30 83.05 0.94 0.47 16 21 N -0.40 -9.62 2.88 -336.91 -0.97 -10.59 16 22 C 0.09 1.89 5.67 38.07 0.22 2.11 16 23 C -0.13 -3.17 8.76 22.38 0.20 -2.97 16 24 C -0.11 -2.22 10.04 22.25 0.22 -1.99 16 25 C -0.11 -1.59 10.04 22.29 0.22 -1.36 16 26 C -0.10 -1.33 10.04 22.25 0.22 -1.10 16 27 C -0.11 -1.83 9.70 22.38 0.22 -1.61 16 28 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.09 2.68 7.85 -2.38 -0.02 2.66 16 30 H 0.08 2.75 7.47 -2.39 -0.02 2.73 16 31 H 0.29 14.69 8.73 -92.71 -0.81 13.88 16 32 H 0.10 3.43 7.53 -2.39 -0.02 3.41 16 33 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 34 H 0.20 2.95 8.06 -2.91 -0.02 2.92 16 35 H 0.22 2.04 8.06 -2.91 -0.02 2.02 16 36 H 0.13 3.41 5.44 -2.91 -0.02 3.40 16 37 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 38 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 39 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 40 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -73.06 356.16 5.09 -67.98 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 0.95 Total: 7.37 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 9.04 Total: 3.95 kcal Atomic # 7 Polarization: -132.42 SS G_CDS: -5.62 Total: -138.03 kcal Atomic # 14 Polarization: 56.99 SS G_CDS: 1.81 Total: 58.80 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -1.10 Total: -0.06 kcal Total: -73.06 5.09 -67.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357065495.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.963 kcal (2) G-P(sol) polarization free energy of solvation -73.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds