Wall clock time and date at job start Sat Apr 11 2020 06:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.38353 * 127.14839 * 2 1 4 4 C 1.39774 * 126.57185 * 0.02562 * 3 2 1 5 5 H 1.08000 * 119.99468 * 354.60837 * 4 3 2 6 6 C 1.40073 * 120.00325 * 174.61546 * 4 3 2 7 7 N 1.30812 * 120.00108 * 6.02328 * 6 4 3 8 8 Si 1.86803 * 120.00060 * 186.02420 * 6 4 3 9 9 H 1.48502 * 109.47470 * 94.97733 * 8 6 4 10 10 H 1.48502 * 109.47146 * 214.98276 * 8 6 4 11 11 H 1.48505 * 109.46972 * 334.98050 * 8 6 4 12 12 N 1.33100 * 106.86831 * 180.29057 * 3 2 1 13 13 N 1.28514 * 109.74451 * 359.74565 * 12 3 2 14 14 C 1.32388 * 110.20487 * 359.97438 * 13 12 3 15 15 S 1.76202 * 126.25989 * 180.02562 * 14 13 12 16 16 C 1.81005 * 99.99803 * 0.02562 * 15 14 13 17 17 C 1.50706 * 109.46952 * 180.02562 * 16 15 14 18 18 C 1.38280 * 119.93429 * 89.99835 * 17 16 15 19 19 C 1.38124 * 120.06105 * 179.72507 * 18 17 16 20 20 C 1.38817 * 119.93712 * 0.27482 * 19 18 17 21 21 N 1.40231 * 120.06406 * 180.02562 * 20 19 18 22 22 C 1.37103 * 126.47392 * 179.71148 * 21 20 19 23 23 C 1.34656 * 106.83340 * 179.84195 * 22 21 20 24 24 N 1.34128 * 108.19549 * 0.42432 * 23 22 21 25 25 C 1.30513 * 109.35032 * 359.73045 * 24 23 22 26 26 C 1.38818 * 119.87000 * 0.02562 * 20 19 18 27 27 C 1.38122 * 119.93392 * 0.02562 * 26 20 19 28 28 H 1.09010 * 109.46890 * 270.16172 * 1 2 3 29 29 H 1.09000 * 109.47541 * 30.15967 * 1 2 3 30 30 H 1.08999 * 109.47258 * 150.16417 * 1 2 3 31 31 H 0.97002 * 120.00255 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47367 * 60.00182 * 16 15 14 33 33 H 1.09004 * 109.47073 * 299.99548 * 16 15 14 34 34 H 1.08000 * 119.96656 * 0.02562 * 18 17 16 35 35 H 1.08003 * 120.02810 * 180.25022 * 19 18 17 36 36 H 1.08001 * 126.58090 * 359.97438 * 22 21 20 37 37 H 1.08006 * 125.90014 * 180.13469 * 23 22 21 38 38 H 1.08005 * 125.71376 * 180.02562 * 25 24 23 39 39 H 1.08002 * 120.03185 * 179.97438 * 26 20 19 40 40 H 1.08006 * 119.96848 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3005 1.1028 0.0000 4 6 1.9087 2.4445 0.0005 5 1 0.8634 2.7017 -0.0869 6 6 2.8716 3.4553 0.1143 7 7 4.1438 3.1512 0.1014 8 14 2.3391 5.2378 0.2844 9 1 2.2954 5.6063 1.7223 10 1 3.3083 6.1135 -0.4220 11 1 0.9900 5.4104 -0.3120 12 7 3.5490 0.6414 -0.0065 13 7 3.5370 -0.6436 -0.0050 14 6 2.2904 -1.0893 0.0030 15 16 1.7873 -2.7779 0.0085 16 6 3.4059 -3.5881 0.0011 17 6 3.2192 -5.0835 0.0039 18 6 3.1273 -5.7697 -1.1931 19 6 2.9619 -7.1410 -1.1936 20 6 2.8820 -7.8296 0.0091 21 7 2.7146 -9.2218 0.0117 22 6 2.6257 -10.0300 1.1157 23 6 2.4673 -11.2891 0.6655 24 7 2.4683 -11.2577 -0.6754 25 6 2.6157 -10.0253 -1.0790 26 6 2.9683 -7.1372 1.2092 27 6 3.1327 -5.7658 1.2035 28 1 -0.3633 0.0029 1.0278 29 1 -0.3634 0.8885 -0.5163 30 1 -0.3634 -0.8914 -0.5113 31 1 4.8107 3.8512 0.1805 32 1 3.9657 -3.2898 0.8875 33 1 3.9559 -3.2927 -0.8925 34 1 3.1899 -5.2335 -2.1285 35 1 2.8943 -7.6769 -2.1288 36 1 2.6716 -9.7165 2.1482 37 1 2.3626 -12.1723 1.2783 38 1 2.6524 -9.6990 -2.1079 39 1 2.9061 -7.6702 2.1464 40 1 3.1994 -5.2265 2.1369 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357075294.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:39 Heat of formation + Delta-G solvation = 161.101272 kcal Electronic energy + Delta-G solvation = -24653.329287 eV Core-core repulsion = 20982.615346 eV Total energy + Delta-G solvation = -3670.713941 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.101 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.60579 -40.57116 -39.56805 -34.92186 -33.75374 -33.38018 -31.66378 -31.40479 -29.72346 -29.38973 -26.96381 -26.44313 -25.50968 -23.63715 -22.95985 -21.02466 -20.91837 -20.84769 -20.40725 -18.92065 -17.43769 -16.52856 -15.80008 -15.77553 -15.58844 -15.49947 -15.12173 -14.80136 -14.68136 -14.52805 -14.01774 -14.00414 -13.79034 -13.48913 -13.32858 -12.86884 -12.83015 -12.33434 -12.28172 -11.89726 -11.47066 -11.41592 -11.35719 -11.00324 -10.93149 -10.42637 -10.41889 -10.33787 -9.80729 -9.65951 -9.39030 -9.01725 -8.77399 -8.51899 -8.49862 -8.39218 -6.92760 -6.71020 -4.63512 0.42607 0.97787 1.74918 2.22703 2.33646 2.70496 2.80578 2.86833 3.02722 3.06446 3.29903 3.50106 3.82662 4.17362 4.24547 4.29879 4.36112 4.39409 4.48441 4.58894 4.77550 5.02585 5.05578 5.24949 5.25822 5.30983 5.36636 5.48973 5.57909 5.66199 5.82925 5.84411 5.93652 5.98856 6.09522 6.27999 6.33892 6.44324 6.69959 6.83785 6.91995 7.18212 7.42181 7.65540 7.82198 8.12266 8.64458 8.79461 10.21664 10.56531 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.042286 B = 0.001835 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.992446 B =15252.229532 C =15427.590663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.515 5.515 3 C 0.347 3.653 4 C -0.447 4.447 5 H 0.085 0.915 6 C 0.078 3.922 7 N -0.736 5.736 8 Si 0.921 3.079 9 H -0.269 1.269 10 H -0.274 1.274 11 H -0.262 1.262 12 N -0.333 5.333 13 N -0.285 5.285 14 C 0.042 3.958 15 S -0.045 6.045 16 C -0.056 4.056 17 C -0.069 4.069 18 C -0.074 4.074 19 C -0.131 4.131 20 C 0.127 3.873 21 N -0.407 5.407 22 C -0.053 4.053 23 C -0.026 4.026 24 N -0.488 5.488 25 C 0.188 3.812 26 C -0.130 4.130 27 C -0.074 4.074 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.280 0.720 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.139 0.861 35 H 0.133 0.867 36 H 0.178 0.822 37 H 0.174 0.826 38 H 0.209 0.791 39 H 0.132 0.868 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.435 -18.127 0.990 18.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.217 5.217 3 C 0.103 3.897 4 C -0.488 4.488 5 H 0.103 0.897 6 C -0.147 4.147 7 N -0.360 5.360 8 Si 0.745 3.255 9 H -0.194 1.194 10 H -0.199 1.199 11 H -0.186 1.186 12 N -0.181 5.181 13 N -0.132 5.132 14 C -0.330 4.330 15 S 0.184 5.816 16 C -0.204 4.204 17 C -0.071 4.071 18 C -0.094 4.094 19 C -0.151 4.151 20 C 0.034 3.966 21 N -0.086 5.086 22 C -0.184 4.184 23 C -0.172 4.172 24 N -0.205 5.205 25 C -0.093 4.093 26 C -0.150 4.150 27 C -0.095 4.095 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.157 0.843 35 H 0.151 0.849 36 H 0.195 0.805 37 H 0.191 0.809 38 H 0.225 0.775 39 H 0.149 0.851 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.841 -19.144 0.485 19.532 hybrid contribution -0.433 2.239 0.672 2.377 sum -4.274 -16.905 1.157 17.475 Atomic orbital electron populations 1.21495 0.78509 1.02661 1.01673 1.46037 1.06084 1.05304 1.64315 1.21629 0.84740 0.88446 0.94919 1.18115 0.95175 0.86472 1.48997 0.89736 1.25799 0.94320 1.01274 0.93326 1.70010 1.00831 1.35005 1.30105 0.86106 0.79527 0.80723 0.79194 1.19406 1.19942 1.18602 1.75460 1.15297 0.97805 1.29506 1.74523 1.15143 1.07679 1.15806 1.25339 0.91597 0.92634 1.23408 1.84618 1.09599 0.91619 1.95737 1.22239 0.98314 0.91720 1.08149 1.19539 0.99987 0.94116 0.93438 1.21007 0.97002 0.92897 0.98478 1.20776 1.03559 0.94659 0.96088 1.17845 1.02958 0.80306 0.95503 1.43251 1.52034 1.05379 1.07905 1.22801 1.11365 0.91309 0.92884 1.22364 1.07075 0.96534 0.91216 1.70332 1.18980 1.19130 1.12076 1.25281 1.04944 0.85308 0.93794 1.20807 1.03354 0.94570 0.96238 1.21012 0.97053 0.92956 0.98442 0.92504 0.90352 0.91586 0.90935 0.87910 0.87900 0.84301 0.84926 0.80518 0.80899 0.77499 0.85060 0.84390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.80 10.88 59.85 0.65 2.46 16 2 N -0.52 -12.13 3.26 -123.17 -0.40 -12.54 16 3 C 0.35 9.51 7.53 -154.81 -1.17 8.34 16 4 C -0.45 -11.63 9.05 -38.32 -0.35 -11.98 16 5 H 0.08 1.99 7.27 -52.49 -0.38 1.61 16 6 C 0.08 1.97 5.49 -17.30 -0.09 1.88 16 7 N -0.74 -19.87 11.96 55.56 0.66 -19.20 16 8 Si 0.92 18.17 29.57 -169.99 -5.03 13.15 16 9 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 10 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 11 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 12 N -0.33 -9.81 10.50 31.26 0.33 -9.48 16 13 N -0.29 -7.57 11.62 30.89 0.36 -7.21 16 14 C 0.04 0.97 8.09 -87.28 -0.71 0.26 16 15 S -0.05 -0.76 21.77 -107.50 -2.34 -3.10 16 16 C -0.06 -0.80 5.35 36.01 0.19 -0.61 16 17 C -0.07 -0.77 5.14 -104.59 -0.54 -1.31 16 18 C -0.07 -0.72 9.69 -39.61 -0.38 -1.11 16 19 C -0.13 -1.15 9.47 -39.41 -0.37 -1.52 16 20 C 0.13 1.19 6.63 -83.59 -0.55 0.64 16 21 N -0.41 -3.86 2.99 -62.10 -0.19 -4.04 16 22 C -0.05 -0.46 10.86 -16.46 -0.18 -0.63 16 23 C -0.03 -0.24 11.85 -17.82 -0.21 -0.45 16 24 N -0.49 -5.53 11.24 -14.47 -0.16 -5.69 16 25 C 0.19 1.79 11.91 -89.64 -1.07 0.72 16 26 C -0.13 -1.16 9.47 -39.41 -0.37 -1.54 16 27 C -0.07 -0.74 9.69 -39.61 -0.38 -1.12 16 28 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 29 H 0.08 1.31 7.49 -51.93 -0.39 0.92 16 30 H 0.07 1.03 7.85 -51.93 -0.41 0.62 16 31 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 32 H 0.10 1.55 8.09 -51.92 -0.42 1.13 16 33 H 0.10 1.55 8.08 -51.91 -0.42 1.13 16 34 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 35 H 0.13 0.84 6.77 -52.48 -0.36 0.48 16 36 H 0.18 1.01 7.15 -52.49 -0.38 0.63 16 37 H 0.17 1.17 8.06 -52.48 -0.42 0.75 16 38 H 0.21 1.28 7.07 -52.48 -0.37 0.91 16 39 H 0.13 0.91 6.82 -52.49 -0.36 0.55 16 40 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 LS Contribution 362.54 15.07 5.46 5.46 Total: -1.00 -34.56 362.54 -11.14 -45.69 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -4.30 Total: 2.94 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -5.53 Total: -5.98 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: 0.60 Total: -58.16 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.15 kcal Atomic # 16 Polarization: -0.76 SS G_CDS: -2.34 Total: -3.10 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.56 -11.14 -45.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357075294.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.793 kcal (2) G-P(sol) polarization free energy of solvation -34.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds