Wall clock time and date at job start Sat Apr 11 2020 06:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.38353 * 127.14839 * 2 1 4 4 C 1.39774 * 126.57185 * 0.02562 * 3 2 1 5 5 H 1.08000 * 119.99468 * 354.60837 * 4 3 2 6 6 C 1.40073 * 120.00325 * 174.61546 * 4 3 2 7 7 N 1.30812 * 120.00108 * 6.02328 * 6 4 3 8 8 Si 1.86803 * 120.00060 * 186.02420 * 6 4 3 9 9 H 1.48502 * 109.47470 * 94.97733 * 8 6 4 10 10 H 1.48502 * 109.47146 * 214.98276 * 8 6 4 11 11 H 1.48505 * 109.46972 * 334.98050 * 8 6 4 12 12 N 1.33100 * 106.86831 * 180.29057 * 3 2 1 13 13 N 1.28514 * 109.74451 * 359.74565 * 12 3 2 14 14 C 1.32388 * 110.20487 * 359.97438 * 13 12 3 15 15 S 1.76202 * 126.25989 * 180.02562 * 14 13 12 16 16 C 1.81005 * 99.99803 * 0.02562 * 15 14 13 17 17 C 1.50706 * 109.46952 * 180.02562 * 16 15 14 18 18 C 1.38280 * 119.93429 * 89.99835 * 17 16 15 19 19 C 1.38124 * 120.06105 * 179.72507 * 18 17 16 20 20 C 1.38817 * 119.93712 * 0.27482 * 19 18 17 21 21 N 1.40231 * 120.06406 * 180.02562 * 20 19 18 22 22 C 1.37103 * 126.47392 * 179.71148 * 21 20 19 23 23 C 1.34656 * 106.83340 * 179.84195 * 22 21 20 24 24 N 1.34128 * 108.19549 * 0.42432 * 23 22 21 25 25 C 1.30513 * 109.35032 * 359.73045 * 24 23 22 26 26 C 1.38818 * 119.87000 * 0.02562 * 20 19 18 27 27 C 1.38122 * 119.93392 * 0.02562 * 26 20 19 28 28 H 1.09010 * 109.46890 * 270.16172 * 1 2 3 29 29 H 1.09000 * 109.47541 * 30.15967 * 1 2 3 30 30 H 1.08999 * 109.47258 * 150.16417 * 1 2 3 31 31 H 0.97002 * 120.00255 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47367 * 60.00182 * 16 15 14 33 33 H 1.09004 * 109.47073 * 299.99548 * 16 15 14 34 34 H 1.08000 * 119.96656 * 0.02562 * 18 17 16 35 35 H 1.08003 * 120.02810 * 180.25022 * 19 18 17 36 36 H 1.08001 * 126.58090 * 359.97438 * 22 21 20 37 37 H 1.08006 * 125.90014 * 180.13469 * 23 22 21 38 38 H 1.08005 * 125.71376 * 180.02562 * 25 24 23 39 39 H 1.08002 * 120.03185 * 179.97438 * 26 20 19 40 40 H 1.08006 * 119.96848 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3005 1.1028 0.0000 4 6 1.9087 2.4445 0.0005 5 1 0.8634 2.7017 -0.0869 6 6 2.8716 3.4553 0.1143 7 7 4.1438 3.1512 0.1014 8 14 2.3391 5.2378 0.2844 9 1 2.2954 5.6063 1.7223 10 1 3.3083 6.1135 -0.4220 11 1 0.9900 5.4104 -0.3120 12 7 3.5490 0.6414 -0.0065 13 7 3.5370 -0.6436 -0.0050 14 6 2.2904 -1.0893 0.0030 15 16 1.7873 -2.7779 0.0085 16 6 3.4059 -3.5881 0.0011 17 6 3.2192 -5.0835 0.0039 18 6 3.1273 -5.7697 -1.1931 19 6 2.9619 -7.1410 -1.1936 20 6 2.8820 -7.8296 0.0091 21 7 2.7146 -9.2218 0.0117 22 6 2.6257 -10.0300 1.1157 23 6 2.4673 -11.2891 0.6655 24 7 2.4683 -11.2577 -0.6754 25 6 2.6157 -10.0253 -1.0790 26 6 2.9683 -7.1372 1.2092 27 6 3.1327 -5.7658 1.2035 28 1 -0.3633 0.0029 1.0278 29 1 -0.3634 0.8885 -0.5163 30 1 -0.3634 -0.8914 -0.5113 31 1 4.8107 3.8512 0.1805 32 1 3.9657 -3.2898 0.8875 33 1 3.9559 -3.2927 -0.8925 34 1 3.1899 -5.2335 -2.1285 35 1 2.8943 -7.6769 -2.1288 36 1 2.6716 -9.7165 2.1482 37 1 2.3626 -12.1723 1.2783 38 1 2.6524 -9.6990 -2.1079 39 1 2.9061 -7.6702 2.1464 40 1 3.1994 -5.2265 2.1369 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357075294.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:38 Heat of formation + Delta-G solvation = 143.543275 kcal Electronic energy + Delta-G solvation = -24654.090659 eV Core-core repulsion = 20982.615346 eV Total energy + Delta-G solvation = -3671.475313 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.101 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.28372 -42.45297 -40.32399 -35.73306 -35.61376 -35.13666 -32.40729 -32.25700 -31.29864 -30.39017 -28.37614 -27.74706 -27.20921 -24.35421 -23.77122 -22.78065 -22.36206 -21.60881 -21.52641 -19.59489 -19.26611 -17.99805 -17.26544 -16.67328 -16.53967 -16.44016 -16.41610 -16.21676 -15.86884 -15.53836 -15.22973 -14.98612 -14.67162 -14.49909 -14.15234 -14.04067 -13.85843 -13.77484 -13.72158 -13.18849 -12.98858 -12.77031 -12.71149 -12.13853 -12.12349 -11.94678 -11.70794 -11.45613 -11.42757 -11.13511 -10.58124 -10.37511 -10.28416 -10.09635 -9.70121 -9.22182 -8.56092 -8.53321 -6.58563 -0.39571 0.26415 0.54895 1.14817 1.19415 1.41578 1.46122 1.58438 1.61193 1.66247 2.10952 2.18141 2.44232 2.50694 2.73652 3.32734 3.53052 3.55661 3.69999 3.77519 3.90363 3.97697 4.07333 4.27406 4.37252 4.44403 4.48204 4.59244 4.61279 4.66465 4.74504 4.88846 4.89378 4.94632 4.95723 5.14026 5.31815 5.39845 5.48923 5.56246 5.62595 5.75788 6.03863 6.21873 6.24698 6.75502 6.91914 6.98101 8.40378 8.64079 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.042286 B = 0.001835 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.992446 B =15252.229532 C =15427.590663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.522 5.522 3 C 0.316 3.684 4 C -0.472 4.472 5 H 0.103 0.897 6 C 0.029 3.971 7 N -0.788 5.788 8 Si 1.006 2.994 9 H -0.264 1.264 10 H -0.270 1.270 11 H -0.247 1.247 12 N -0.389 5.389 13 N -0.330 5.330 14 C 0.053 3.947 15 S -0.001 6.001 16 C -0.049 4.049 17 C -0.085 4.085 18 C -0.075 4.075 19 C -0.128 4.128 20 C 0.126 3.874 21 N -0.413 5.413 22 C -0.054 4.054 23 C -0.044 4.044 24 N -0.523 5.523 25 C 0.181 3.819 26 C -0.128 4.128 27 C -0.077 4.077 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.284 0.716 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.147 0.853 35 H 0.158 0.842 36 H 0.204 0.796 37 H 0.191 0.809 38 H 0.234 0.766 39 H 0.154 0.846 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.367 -19.211 1.225 20.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.224 5.224 3 C 0.070 3.930 4 C -0.512 4.512 5 H 0.121 0.879 6 C -0.191 4.191 7 N -0.413 5.413 8 Si 0.824 3.176 9 H -0.188 1.188 10 H -0.195 1.195 11 H -0.170 1.170 12 N -0.235 5.235 13 N -0.175 5.175 14 C -0.320 4.320 15 S 0.229 5.771 16 C -0.197 4.197 17 C -0.087 4.087 18 C -0.096 4.096 19 C -0.148 4.148 20 C 0.033 3.967 21 N -0.091 5.091 22 C -0.184 4.184 23 C -0.189 4.189 24 N -0.241 5.241 25 C -0.100 4.100 26 C -0.148 4.148 27 C -0.097 4.097 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.165 0.835 35 H 0.176 0.824 36 H 0.221 0.779 37 H 0.208 0.792 38 H 0.250 0.750 39 H 0.171 0.829 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.793 -20.250 0.723 21.075 hybrid contribution 0.121 2.233 0.598 2.315 sum -5.672 -18.017 1.321 18.935 Atomic orbital electron populations 1.21846 0.75329 1.04404 1.03342 1.46391 1.08084 1.04485 1.63390 1.22043 0.85148 0.89952 0.95871 1.18612 0.96369 0.86546 1.49721 0.87939 1.26971 0.93926 1.06293 0.91960 1.70154 1.02488 1.36918 1.31700 0.84854 0.79596 0.73816 0.79284 1.18846 1.19514 1.16956 1.75315 1.17317 0.99239 1.31636 1.74397 1.17179 1.07058 1.18821 1.26519 0.91041 0.95684 1.18792 1.84434 1.11164 0.86617 1.94926 1.22233 0.96591 0.93820 1.07074 1.19353 1.02565 0.92015 0.94804 1.21124 0.96677 0.93524 0.98260 1.21017 1.02460 0.94164 0.97128 1.18024 1.02351 0.80429 0.95929 1.43354 1.52171 1.05356 1.08250 1.23285 1.10272 0.90974 0.93888 1.22790 1.07347 0.97793 0.90955 1.70320 1.20220 1.20290 1.13253 1.25839 1.04213 0.85002 0.94925 1.21012 1.02478 0.94085 0.97203 1.21111 0.96828 0.93564 0.98222 0.90775 0.89388 0.89108 0.90537 0.89091 0.89005 0.83534 0.82434 0.77883 0.79186 0.75025 0.82855 0.83748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.18 10.88 127.77 1.39 4.57 16 2 N -0.52 -24.71 3.26 -543.61 -1.77 -26.48 16 3 C 0.32 17.88 7.53 133.23 1.00 18.88 16 4 C -0.47 -25.00 9.05 23.09 0.21 -24.79 16 5 H 0.10 4.80 7.27 -2.91 -0.02 4.78 16 6 C 0.03 1.50 5.49 85.29 0.47 1.96 16 7 N -0.79 -44.28 11.96 21.85 0.26 -44.02 16 8 Si 1.01 37.30 29.57 68.60 2.03 39.33 16 9 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 10 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 11 H -0.25 -8.41 7.11 99.48 0.71 -7.71 16 12 N -0.39 -23.98 10.50 -55.02 -0.58 -24.56 16 13 N -0.33 -18.24 11.62 -56.18 -0.65 -18.89 16 14 C 0.05 2.49 8.09 179.18 1.45 3.94 16 15 S 0.00 -0.02 21.77 -56.49 -1.23 -1.25 16 16 C -0.05 -1.39 5.35 71.24 0.38 -1.01 16 17 C -0.08 -1.79 5.14 -19.84 -0.10 -1.89 16 18 C -0.08 -1.34 9.69 22.25 0.22 -1.12 16 19 C -0.13 -1.89 9.47 22.38 0.21 -1.68 16 20 C 0.13 2.02 6.63 38.07 0.25 2.27 16 21 N -0.41 -6.74 2.99 -350.39 -1.05 -7.79 16 22 C -0.05 -0.79 10.86 83.05 0.90 0.11 16 23 C -0.04 -0.75 11.85 83.52 0.99 0.24 16 24 N -0.52 -11.09 11.24 -199.70 -2.25 -13.33 16 25 C 0.18 3.06 11.91 180.00 2.14 5.20 16 26 C -0.13 -1.95 9.47 22.38 0.21 -1.74 16 27 C -0.08 -1.39 9.69 22.25 0.22 -1.17 16 28 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 29 H 0.09 2.81 7.49 -2.39 -0.02 2.79 16 30 H 0.09 2.60 7.85 -2.39 -0.02 2.59 16 31 H 0.28 14.41 8.30 -92.71 -0.77 13.64 16 32 H 0.09 2.81 8.09 -2.40 -0.02 2.79 16 33 H 0.09 2.82 8.08 -2.39 -0.02 2.80 16 34 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.16 1.46 6.77 -2.91 -0.02 1.45 16 36 H 0.20 1.64 7.15 -2.91 -0.02 1.62 16 37 H 0.19 2.26 8.06 -2.91 -0.02 2.24 16 38 H 0.23 2.27 7.07 -2.91 -0.02 2.25 16 39 H 0.15 1.59 6.82 -2.91 -0.02 1.57 16 40 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -79.14 362.54 5.79 -73.34 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 1.08 Total: 19.88 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 9.94 Total: 3.77 kcal Atomic # 7 Polarization: -129.04 SS G_CDS: -6.03 Total: -135.07 kcal Atomic # 14 Polarization: 37.30 SS G_CDS: 2.03 Total: 39.33 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -1.23 Total: -1.25 kcal Total: -79.14 5.79 -73.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357075294.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.886 kcal (2) G-P(sol) polarization free energy of solvation -79.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds