Wall clock time and date at job start Sat Apr 11 2020 06:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.38345 * 127.15455 * 2 1 4 4 C 1.39774 * 126.56599 * 0.02562 * 3 2 1 5 5 H 1.08001 * 119.99907 * 0.30041 * 4 3 2 6 6 C 1.40088 * 120.00223 * 180.31059 * 4 3 2 7 7 N 1.30813 * 119.99693 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 120.00012 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47162 * 59.99527 * 8 6 4 10 10 H 1.48500 * 109.47237 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47453 * 299.99827 * 8 6 4 12 12 N 1.33098 * 106.87201 * 180.29106 * 3 2 1 13 13 N 1.28515 * 109.74423 * 359.74089 * 12 3 2 14 14 C 1.32391 * 110.20570 * 0.02562 * 13 12 3 15 15 S 1.76195 * 126.26020 * 179.97438 * 14 13 12 16 16 C 1.81002 * 99.99957 * 0.02677 * 15 14 13 17 17 C 1.50700 * 109.46929 * 180.02562 * 16 15 14 18 18 C 1.39922 * 125.87580 * 269.97464 * 17 16 15 19 19 C 1.35326 * 107.92975 * 180.02562 * 18 17 16 20 20 N 1.35221 * 107.71468 * 359.97438 * 19 18 17 21 21 C 1.40180 * 126.05545 * 180.26081 * 20 19 18 22 22 C 1.38839 * 120.06478 * 359.43888 * 21 20 19 23 23 C 1.38124 * 119.92908 * 179.74476 * 22 21 20 24 24 C 1.38274 * 120.06908 * 0.53299 * 23 22 21 25 25 C 1.38283 * 120.13456 * 359.74091 * 24 23 22 26 26 C 1.38117 * 120.06352 * 359.97438 * 25 24 23 27 27 N 1.30873 * 125.87918 * 89.97420 * 17 16 15 28 28 H 1.08993 * 109.47216 * 270.16214 * 1 2 3 29 29 H 1.09007 * 109.46661 * 30.16196 * 1 2 3 30 30 H 1.09002 * 109.47026 * 150.15816 * 1 2 3 31 31 H 0.96999 * 119.99406 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.47156 * 60.00374 * 16 15 14 33 33 H 1.08996 * 109.46939 * 299.99360 * 16 15 14 34 34 H 1.07997 * 126.03913 * 0.02562 * 18 17 16 35 35 H 1.08004 * 126.14198 * 179.97438 * 19 18 17 36 36 H 1.07998 * 120.03410 * 0.02562 * 22 21 20 37 37 H 1.08001 * 119.96605 * 180.29942 * 23 22 21 38 38 H 1.08002 * 119.93399 * 179.76701 * 24 23 22 39 39 H 1.08002 * 119.96715 * 179.97438 * 25 24 23 40 40 H 1.08007 * 120.03173 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1026 0.0000 4 6 1.9088 2.4443 0.0005 5 1 0.8596 2.7005 0.0058 6 6 2.8769 3.4568 -0.0061 7 7 4.1477 3.1465 -0.0123 8 14 2.3532 5.2498 -0.0062 9 1 1.5487 5.5306 1.2101 10 1 3.5583 6.1175 -0.0132 11 1 1.5362 5.5269 -1.2149 12 7 3.5490 0.6413 -0.0065 13 7 3.5370 -0.6438 -0.0049 14 6 2.2903 -1.0894 0.0021 15 16 1.7872 -2.7780 0.0060 16 6 3.4057 -3.5882 -0.0011 17 6 3.2189 -5.0836 0.0005 18 6 3.1230 -5.8968 1.1351 19 6 2.9618 -7.1745 0.7195 20 7 2.9554 -7.1697 -0.6327 21 6 2.8063 -8.2906 -1.4611 22 6 2.6582 -9.5532 -0.9029 23 6 2.5062 -10.6552 -1.7217 24 6 2.5126 -10.5033 -3.0960 25 6 2.6657 -9.2478 -3.6550 26 6 2.8122 -8.1413 -2.8414 27 7 3.1184 -5.8452 -1.0591 28 1 -0.3633 0.0029 1.0276 29 1 -0.3633 0.8886 -0.5164 30 1 -0.3633 -0.8914 -0.5114 31 1 4.8180 3.8476 -0.0173 32 1 3.9650 -3.2907 0.8859 33 1 3.9562 -3.2923 -0.8941 34 1 3.1694 -5.5636 2.1614 35 1 2.8571 -8.0423 1.3539 36 1 2.6571 -9.6730 0.1704 37 1 2.3861 -11.6370 -1.2880 38 1 2.3974 -11.3669 -3.7342 39 1 2.6708 -9.1323 -4.7288 40 1 2.9313 -7.1609 -3.2785 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357107630.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:48 Heat of formation + Delta-G solvation = 160.834104 kcal Electronic energy + Delta-G solvation = -24666.153814 eV Core-core repulsion = 20995.428288 eV Total energy + Delta-G solvation = -3670.725527 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.101 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.66144 -42.45756 -39.93513 -35.63012 -35.29053 -35.05283 -32.27508 -31.85076 -31.29772 -30.85524 -28.71457 -28.12992 -27.35910 -24.23736 -23.65582 -22.80138 -22.42546 -21.70037 -20.82352 -19.33653 -19.23925 -17.89833 -17.27357 -17.11809 -16.68537 -16.58344 -16.11906 -15.97297 -15.87321 -15.36477 -15.15445 -15.00710 -14.46631 -14.42642 -14.29286 -13.94851 -13.82432 -13.68721 -13.45877 -13.14506 -12.91841 -12.76386 -12.59196 -12.18749 -12.16449 -11.98951 -11.72410 -11.71065 -11.42074 -11.11703 -10.58533 -10.37777 -10.29326 -10.19202 -10.02111 -9.06437 -8.56819 -8.53876 -6.58708 -0.27824 0.26794 0.33362 1.03696 1.20193 1.24938 1.29969 1.42088 1.57683 1.62330 1.83640 2.19224 2.44612 2.50894 2.79861 3.18985 3.34311 3.57021 3.82953 3.88862 4.00720 4.06960 4.23094 4.24312 4.42726 4.44937 4.49730 4.54625 4.61105 4.66966 4.73143 4.86026 4.88613 4.95613 5.02174 5.23935 5.32000 5.37335 5.46313 5.53306 5.56229 5.79627 6.02172 6.18598 6.21786 6.48787 6.75747 6.91970 8.41502 8.63503 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.030712 B = 0.001916 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.487047 B =14610.650976 C =14701.017949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.521 5.521 3 C 0.317 3.683 4 C -0.470 4.470 5 H 0.104 0.896 6 C 0.028 3.972 7 N -0.788 5.788 8 Si 1.008 2.992 9 H -0.253 1.253 10 H -0.272 1.272 11 H -0.254 1.254 12 N -0.387 5.387 13 N -0.329 5.329 14 C 0.053 3.947 15 S 0.016 5.984 16 C -0.010 4.010 17 C 0.083 3.917 18 C -0.253 4.253 19 C 0.064 3.936 20 N -0.324 5.324 21 C 0.130 3.870 22 C -0.139 4.139 23 C -0.090 4.090 24 C -0.127 4.127 25 C -0.101 4.101 26 C -0.146 4.146 27 N -0.311 5.311 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.285 0.715 32 H 0.112 0.888 33 H 0.085 0.915 34 H 0.178 0.822 35 H 0.227 0.773 36 H 0.156 0.844 37 H 0.167 0.833 38 H 0.157 0.843 39 H 0.146 0.854 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.449 -26.032 -0.367 27.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.223 5.223 3 C 0.071 3.929 4 C -0.511 4.511 5 H 0.122 0.878 6 C -0.193 4.193 7 N -0.413 5.413 8 Si 0.826 3.174 9 H -0.177 1.177 10 H -0.197 1.197 11 H -0.178 1.178 12 N -0.234 5.234 13 N -0.173 5.173 14 C -0.321 4.321 15 S 0.242 5.758 16 C -0.160 4.160 17 C -0.084 4.084 18 C -0.282 4.282 19 C -0.077 4.077 20 N -0.100 5.100 21 C 0.038 3.962 22 C -0.160 4.160 23 C -0.108 4.108 24 C -0.145 4.145 25 C -0.120 4.120 26 C -0.167 4.167 27 N -0.134 5.134 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.131 0.869 33 H 0.104 0.896 34 H 0.195 0.805 35 H 0.243 0.757 36 H 0.174 0.826 37 H 0.184 0.816 38 H 0.175 0.825 39 H 0.164 0.836 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.781 -26.576 -1.668 27.479 hybrid contribution 0.142 1.976 0.662 2.088 sum -6.639 -24.601 -1.007 25.501 Atomic orbital electron populations 1.21858 0.75276 1.04374 1.03455 1.46359 1.08091 1.04329 1.63479 1.22060 0.85093 0.89915 0.95836 1.18602 0.96029 0.86390 1.50037 0.87790 1.27017 0.93911 1.06562 0.91836 1.70157 1.02399 1.37105 1.31600 0.84888 0.78671 0.73421 0.80377 1.17653 1.19655 1.17791 1.75314 1.17337 0.99061 1.31670 1.74412 1.17107 1.07192 1.18627 1.26342 0.91167 0.95358 1.19243 1.84388 1.09558 0.86931 1.94967 1.21430 0.97651 0.89527 1.07400 1.21547 1.00487 0.93881 0.92455 1.21823 1.14221 0.91716 1.00447 1.23302 0.99953 1.00828 0.83649 1.46037 1.54027 1.04514 1.05420 1.18016 1.03537 0.84416 0.90215 1.21182 1.03229 0.89301 1.02271 1.21438 0.96949 0.99079 0.93338 1.21658 0.99194 0.97722 0.95952 1.21346 0.97922 0.91891 1.00806 1.21016 1.03214 1.00596 0.91830 1.77401 1.25012 0.87690 1.23257 0.90528 0.89184 0.89414 0.90508 0.86920 0.89635 0.80496 0.75661 0.82626 0.81564 0.82487 0.83604 0.86889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.36 10.87 127.77 1.39 4.75 16 2 N -0.52 -25.94 3.26 -543.62 -1.77 -27.71 16 3 C 0.32 18.54 7.53 133.23 1.00 19.54 16 4 C -0.47 -25.53 9.04 23.09 0.21 -25.32 16 5 H 0.10 4.97 7.31 -2.91 -0.02 4.95 16 6 C 0.03 1.44 5.50 85.29 0.47 1.91 16 7 N -0.79 -45.35 11.94 21.86 0.26 -45.09 16 8 Si 1.01 38.19 29.56 68.60 2.03 40.22 16 9 H -0.25 -8.99 7.11 99.48 0.71 -8.29 16 10 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 11 H -0.25 -9.08 7.11 99.48 0.71 -8.38 16 12 N -0.39 -24.76 10.48 -55.02 -0.58 -25.34 16 13 N -0.33 -19.18 11.62 -56.17 -0.65 -19.83 16 14 C 0.05 2.64 8.09 179.18 1.45 4.09 16 15 S 0.02 0.60 21.77 -56.49 -1.23 -0.63 16 16 C -0.01 -0.34 5.78 71.24 0.41 0.07 16 17 C 0.08 2.59 6.47 43.11 0.28 2.87 16 18 C -0.25 -5.99 10.74 22.01 0.24 -5.76 16 19 C 0.06 1.24 10.80 83.50 0.90 2.14 16 20 N -0.32 -8.19 3.80 -187.76 -0.71 -8.90 16 21 C 0.13 2.75 6.69 38.09 0.25 3.01 16 22 C -0.14 -1.82 9.46 22.39 0.21 -1.61 16 23 C -0.09 -0.82 10.04 22.25 0.22 -0.59 16 24 C -0.13 -1.28 10.04 22.29 0.22 -1.06 16 25 C -0.10 -1.51 10.04 22.25 0.22 -1.29 16 26 C -0.15 -3.21 9.66 22.38 0.22 -2.99 16 27 N -0.31 -10.14 11.87 -47.33 -0.56 -10.70 16 28 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.09 3.02 7.54 -2.38 -0.02 3.01 16 30 H 0.09 2.76 7.85 -2.39 -0.02 2.74 16 31 H 0.28 14.82 8.30 -92.71 -0.77 14.05 16 32 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 33 H 0.08 3.41 8.14 -2.40 -0.02 3.39 16 34 H 0.18 3.35 8.06 -2.91 -0.02 3.33 16 35 H 0.23 1.85 7.04 -2.91 -0.02 1.83 16 36 H 0.16 1.10 6.74 -2.91 -0.02 1.08 16 37 H 0.17 0.37 8.06 -2.91 -0.02 0.35 16 38 H 0.16 0.64 8.06 -2.91 -0.02 0.62 16 39 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 40 H 0.11 2.96 7.70 -2.91 -0.02 2.94 16 Total: -1.00 -83.44 365.49 5.56 -77.87 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 1.08 Total: 20.34 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: 7.70 Total: -0.24 kcal Atomic # 7 Polarization: -133.55 SS G_CDS: -4.01 Total: -137.56 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.03 Total: 40.22 kcal Atomic # 16 Polarization: 0.60 SS G_CDS: -1.23 Total: -0.63 kcal Total: -83.44 5.56 -77.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357107630.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 238.708 kcal (2) G-P(sol) polarization free energy of solvation -83.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds