Wall clock time and date at job start Sat Apr 11 2020 06:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35888 * 117.00239 * 2 1 4 4 C 1.38674 * 119.99719 * 0.02562 * 3 2 1 5 5 C 1.38680 * 120.00103 * 180.02562 * 4 3 2 6 6 O 1.35894 * 120.00444 * 179.97438 * 5 4 3 7 7 C 1.42901 * 116.99621 * 359.88293 * 6 5 4 8 8 C 1.38678 * 119.99660 * 359.86646 * 5 4 3 9 9 C 1.38675 * 120.00192 * 0.09538 * 8 5 4 10 10 O 1.35893 * 119.99942 * 179.97438 * 9 8 5 11 11 C 1.42903 * 117.00043 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.46963 * 179.97438 * 11 10 9 13 13 N 1.46496 * 109.47164 * 65.00393 * 12 11 10 14 14 C 1.34784 * 119.99806 * 179.97438 * 13 12 11 15 15 O 1.21274 * 119.99847 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99543 * 179.97438 * 14 13 12 17 17 S 1.81004 * 109.46759 * 180.02562 * 16 14 13 18 18 C 1.76198 * 99.99824 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00421 * 359.97438 * 18 17 16 20 20 C 1.38800 * 120.00185 * 179.97438 * 18 17 16 21 21 N 1.31627 * 120.00102 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99672 * 0.02562 * 20 18 17 23 23 H 1.48490 * 109.47406 * 89.99844 * 22 20 18 24 24 H 1.48507 * 109.46690 * 210.00452 * 22 20 18 25 25 H 1.48502 * 109.47146 * 329.99408 * 22 20 18 26 26 C 1.38673 * 119.99783 * 359.97438 * 9 8 5 27 27 H 1.09000 * 109.47363 * 300.00658 * 1 2 3 28 28 H 1.08997 * 109.47137 * 60.00556 * 1 2 3 29 29 H 1.09003 * 109.46892 * 180.02562 * 1 2 3 30 30 H 1.07997 * 120.00286 * 359.97438 * 4 3 2 31 31 H 1.09006 * 109.47127 * 60.00846 * 7 6 5 32 32 H 1.09005 * 109.47350 * 180.02562 * 7 6 5 33 33 H 1.09001 * 109.47612 * 300.00770 * 7 6 5 34 34 H 1.08009 * 119.99644 * 180.36251 * 8 5 4 35 35 H 1.08997 * 109.46689 * 300.00400 * 11 10 9 36 36 H 1.09006 * 109.46693 * 60.00167 * 11 10 9 37 37 H 1.09001 * 109.46572 * 185.00343 * 12 11 10 38 38 H 1.09005 * 109.47435 * 304.99814 * 12 11 10 39 39 H 0.96999 * 119.99783 * 359.97438 * 13 12 11 40 40 H 1.09000 * 109.47055 * 299.99405 * 16 14 13 41 41 H 1.08998 * 109.47172 * 59.99791 * 16 14 13 42 42 H 0.97002 * 119.99839 * 179.97438 * 21 20 18 43 43 H 1.08001 * 119.99546 * 179.97438 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2906 2.3738 0.0005 5 6 1.9202 3.6094 0.0000 6 8 1.1801 4.7492 0.0000 7 6 -0.2410 4.5998 -0.0020 8 6 3.3051 3.6820 0.0017 9 6 4.0604 2.5189 0.0020 10 8 5.4174 2.5901 0.0032 11 6 6.1320 1.3525 0.0039 12 6 7.6362 1.6321 0.0045 13 7 8.0090 2.2956 1.2563 14 6 9.2928 2.6397 1.4802 15 8 10.1393 2.3997 0.6456 16 6 9.6762 3.3228 2.7677 17 16 11.4558 3.6535 2.7684 18 6 11.6215 4.4322 4.3403 19 1 10.7541 4.5706 4.9686 20 6 12.8670 4.8678 4.7711 21 7 12.9908 5.4499 5.9451 22 14 14.3673 4.6290 3.6841 23 1 14.5338 5.8128 2.8032 24 1 15.5745 4.4709 4.5345 25 1 14.1864 3.4133 2.8507 26 6 3.4308 1.2834 0.0011 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2122 2.3173 0.0005 31 1 -0.5499 4.0501 0.8872 32 1 -0.7099 5.5838 -0.0023 33 1 -0.5476 4.0514 -0.8928 34 1 3.7954 4.6443 0.0072 35 1 5.8678 0.7811 0.8937 36 1 5.8694 0.7809 -0.8863 37 1 8.1805 0.6920 -0.0845 38 1 7.8861 2.2778 -0.8374 39 1 7.3320 2.4873 1.9240 40 1 9.1323 4.2633 2.8559 41 1 9.4257 2.6777 3.6098 42 1 13.8612 5.7540 6.2463 43 1 4.0190 0.3776 0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358326110.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:53 Heat of formation + Delta-G solvation = -121.062462 kcal Electronic energy + Delta-G solvation = -25799.370699 eV Core-core repulsion = 21744.526798 eV Total energy + Delta-G solvation = -4054.843901 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.16315 -39.75830 -39.29197 -38.99740 -36.22799 -34.61266 -32.40970 -31.17242 -30.67117 -29.78084 -28.56453 -28.08853 -27.08747 -25.58538 -23.76847 -22.62607 -21.82207 -20.54792 -19.64053 -17.92802 -17.54995 -17.08245 -16.77847 -16.66183 -16.46729 -16.41298 -16.00696 -15.96888 -15.46176 -15.21013 -15.14660 -14.92641 -14.49126 -13.80272 -13.56754 -13.31741 -13.03499 -13.02000 -12.88634 -12.77908 -12.65521 -12.09961 -12.06310 -11.95464 -11.83447 -11.68893 -11.38649 -11.23491 -10.98158 -10.57777 -10.47216 -9.83151 -9.51967 -9.01586 -8.95484 -8.64628 -8.49295 -8.46986 -6.88548 -6.25982 -3.97472 0.97262 1.03452 2.36796 2.74084 2.78824 2.99618 3.15051 3.29968 3.33403 3.36940 3.53068 3.68655 4.35920 4.37958 4.41127 4.50798 4.52231 4.61039 4.65067 4.66542 4.70295 4.75351 4.79077 4.80243 4.91867 4.93635 4.99142 5.11657 5.13034 5.28918 5.37571 5.66817 5.69830 5.80011 5.81718 5.83756 6.02757 6.06317 6.49081 6.65943 6.89610 7.07221 7.61361 7.97130 8.44989 8.50146 9.20210 10.83240 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019300 B = 0.001798 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.401089 B =15569.891411 C =16327.641283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.202 3.798 4 C -0.334 4.334 5 C 0.202 3.798 6 O -0.309 6.309 7 C 0.027 3.973 8 C -0.220 4.220 9 C 0.209 3.791 10 O -0.300 6.300 11 C 0.046 3.954 12 C 0.125 3.875 13 N -0.735 5.735 14 C 0.532 3.468 15 O -0.521 6.521 16 C -0.124 4.124 17 S -0.142 6.142 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.881 5.881 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.235 1.235 26 C -0.278 4.278 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.102 0.898 30 H 0.135 0.865 31 H 0.056 0.944 32 H 0.103 0.897 33 H 0.056 0.944 34 H 0.143 0.857 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.403 0.597 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.270 0.730 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.610 -9.744 -13.735 35.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.156 3.844 4 C -0.353 4.353 5 C 0.156 3.844 6 O -0.222 6.222 7 C -0.068 4.068 8 C -0.239 4.239 9 C 0.162 3.838 10 O -0.213 6.213 11 C -0.029 4.029 12 C 0.000 4.000 13 N -0.390 5.390 14 C 0.318 3.682 15 O -0.396 6.396 16 C -0.275 4.275 17 S 0.084 5.916 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.114 4.114 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 C -0.297 4.297 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.121 0.879 30 H 0.152 0.848 31 H 0.075 0.925 32 H 0.121 0.879 33 H 0.074 0.926 34 H 0.161 0.839 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.237 0.763 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.080 0.920 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -29.810 -9.895 -15.002 34.808 hybrid contribution -1.246 0.169 1.097 1.669 sum -31.056 -9.726 -13.905 35.390 Atomic orbital electron populations 1.23097 0.78076 1.04190 1.01463 1.86086 1.21668 1.26736 1.88016 1.18306 0.91294 0.83608 0.91215 1.21126 1.00511 0.91805 1.21880 1.18218 0.90267 0.84505 0.91412 1.86108 1.19282 1.28819 1.87955 1.23107 0.78152 1.04152 1.01384 1.19363 0.90018 0.98352 1.16189 1.18110 0.82496 0.92069 0.91104 1.86175 1.14613 1.32839 1.87664 1.23237 0.91450 0.85201 1.03057 1.21346 0.90791 0.99346 0.88473 1.45911 1.09656 1.63032 1.20395 1.20276 0.81580 0.77961 0.88379 1.90698 1.49177 1.53264 1.46414 1.23275 1.03701 1.03292 0.97182 1.84768 1.01173 1.78430 1.27226 1.22325 0.98915 1.44047 1.01551 0.89366 1.24719 0.98515 0.93382 0.94750 1.69941 1.25103 1.38062 1.18616 0.86726 0.82402 0.81363 0.81306 1.19210 1.19979 1.15925 1.20303 0.92525 0.97723 1.19161 0.92494 0.92539 0.87948 0.84753 0.92511 0.87864 0.92572 0.83947 0.90671 0.89895 0.89131 0.90227 0.76291 0.88379 0.88432 0.91971 0.84333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.58 10.49 -19.39 -0.20 -2.78 16 3 C 0.20 1.85 6.68 -39.26 -0.26 1.59 16 4 C -0.33 -2.77 8.02 -39.26 -0.31 -3.09 16 5 C 0.20 1.95 6.68 -39.26 -0.26 1.69 16 6 O -0.31 -2.76 10.49 -19.41 -0.20 -2.97 16 7 C 0.03 0.13 9.81 101.05 0.99 1.12 16 8 C -0.22 -2.33 9.92 -39.26 -0.39 -2.72 16 9 C 0.21 2.14 6.68 -39.26 -0.26 1.88 16 10 O -0.30 -3.10 10.08 -19.40 -0.20 -3.29 16 11 C 0.05 0.36 4.87 37.16 0.18 0.55 16 12 C 0.12 1.31 6.06 -4.05 -0.02 1.28 16 13 N -0.73 -9.47 5.50 -60.29 -0.33 -9.81 16 14 C 0.53 9.53 7.85 -10.98 -0.09 9.44 16 15 O -0.52 -11.25 15.86 5.56 0.09 -11.16 16 16 C -0.12 -2.43 6.16 36.01 0.22 -2.21 16 17 S -0.14 -3.65 18.55 -107.50 -1.99 -5.65 16 18 C -0.52 -15.17 10.04 30.94 0.31 -14.86 16 19 H 0.09 2.68 8.03 -52.48 -0.42 2.25 16 20 C 0.09 2.80 5.50 -17.43 -0.10 2.71 16 21 N -0.88 -26.80 13.97 55.49 0.78 -26.02 16 22 Si 0.86 21.99 27.74 -169.99 -4.72 17.28 16 23 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 26 C -0.28 -2.60 8.97 -39.26 -0.35 -2.96 16 27 H 0.06 0.19 7.66 -51.93 -0.40 -0.20 16 28 H 0.06 0.18 7.66 -51.93 -0.40 -0.21 16 29 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.13 0.77 4.52 -52.49 -0.24 0.54 16 31 H 0.06 0.21 7.65 -51.93 -0.40 -0.19 16 32 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 34 H 0.14 1.50 8.06 -52.48 -0.42 1.07 16 35 H 0.08 0.51 7.66 -51.93 -0.40 0.11 16 36 H 0.08 0.51 7.66 -51.93 -0.40 0.11 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.40 4.32 8.47 -40.82 -0.35 3.98 16 40 H 0.10 1.82 8.14 -51.92 -0.42 1.39 16 41 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 42 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 43 H 0.14 1.10 6.29 -52.49 -0.33 0.77 16 LS Contribution 379.18 15.07 5.71 5.71 Total: -1.00 -36.55 379.18 -6.26 -42.81 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -5.84 Total: 0.35 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 0.65 Total: -4.47 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.44 Total: -35.83 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.51 Total: -20.21 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.72 Total: 17.28 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.55 -6.26 -42.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358326110.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.254 kcal (2) G-P(sol) polarization free energy of solvation -36.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds