Wall clock time and date at job start Sat Apr 11 2020 06:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35888 * 117.00239 * 2 1 4 4 C 1.38674 * 119.99719 * 0.02562 * 3 2 1 5 5 C 1.38680 * 120.00103 * 180.02562 * 4 3 2 6 6 O 1.35894 * 120.00444 * 179.97438 * 5 4 3 7 7 C 1.42901 * 116.99621 * 359.88293 * 6 5 4 8 8 C 1.38678 * 119.99660 * 359.86646 * 5 4 3 9 9 C 1.38675 * 120.00192 * 0.09538 * 8 5 4 10 10 O 1.35893 * 119.99942 * 179.97438 * 9 8 5 11 11 C 1.42903 * 117.00043 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.46963 * 179.97438 * 11 10 9 13 13 N 1.46496 * 109.47164 * 65.00393 * 12 11 10 14 14 C 1.34784 * 119.99806 * 179.97438 * 13 12 11 15 15 O 1.21274 * 119.99847 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99543 * 179.97438 * 14 13 12 17 17 S 1.81004 * 109.46759 * 180.02562 * 16 14 13 18 18 C 1.76198 * 99.99824 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00421 * 359.97438 * 18 17 16 20 20 C 1.38800 * 120.00185 * 179.97438 * 18 17 16 21 21 N 1.31627 * 120.00102 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99672 * 0.02562 * 20 18 17 23 23 H 1.48490 * 109.47406 * 89.99844 * 22 20 18 24 24 H 1.48507 * 109.46690 * 210.00452 * 22 20 18 25 25 H 1.48502 * 109.47146 * 329.99408 * 22 20 18 26 26 C 1.38673 * 119.99783 * 359.97438 * 9 8 5 27 27 H 1.09000 * 109.47363 * 300.00658 * 1 2 3 28 28 H 1.08997 * 109.47137 * 60.00556 * 1 2 3 29 29 H 1.09003 * 109.46892 * 180.02562 * 1 2 3 30 30 H 1.07997 * 120.00286 * 359.97438 * 4 3 2 31 31 H 1.09006 * 109.47127 * 60.00846 * 7 6 5 32 32 H 1.09005 * 109.47350 * 180.02562 * 7 6 5 33 33 H 1.09001 * 109.47612 * 300.00770 * 7 6 5 34 34 H 1.08009 * 119.99644 * 180.36251 * 8 5 4 35 35 H 1.08997 * 109.46689 * 300.00400 * 11 10 9 36 36 H 1.09006 * 109.46693 * 60.00167 * 11 10 9 37 37 H 1.09001 * 109.46572 * 185.00343 * 12 11 10 38 38 H 1.09005 * 109.47435 * 304.99814 * 12 11 10 39 39 H 0.96999 * 119.99783 * 359.97438 * 13 12 11 40 40 H 1.09000 * 109.47055 * 299.99405 * 16 14 13 41 41 H 1.08998 * 109.47172 * 59.99791 * 16 14 13 42 42 H 0.97002 * 119.99839 * 179.97438 * 21 20 18 43 43 H 1.08001 * 119.99546 * 179.97438 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2906 2.3738 0.0005 5 6 1.9202 3.6094 0.0000 6 8 1.1801 4.7492 0.0000 7 6 -0.2410 4.5998 -0.0020 8 6 3.3051 3.6820 0.0017 9 6 4.0604 2.5189 0.0020 10 8 5.4174 2.5901 0.0032 11 6 6.1320 1.3525 0.0039 12 6 7.6362 1.6321 0.0045 13 7 8.0090 2.2956 1.2563 14 6 9.2928 2.6397 1.4802 15 8 10.1393 2.3997 0.6456 16 6 9.6762 3.3228 2.7677 17 16 11.4558 3.6535 2.7684 18 6 11.6215 4.4322 4.3403 19 1 10.7541 4.5706 4.9686 20 6 12.8670 4.8678 4.7711 21 7 12.9908 5.4499 5.9451 22 14 14.3673 4.6290 3.6841 23 1 14.5338 5.8128 2.8032 24 1 15.5745 4.4709 4.5345 25 1 14.1864 3.4133 2.8507 26 6 3.4308 1.2834 0.0011 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2122 2.3173 0.0005 31 1 -0.5499 4.0501 0.8872 32 1 -0.7099 5.5838 -0.0023 33 1 -0.5476 4.0514 -0.8928 34 1 3.7954 4.6443 0.0072 35 1 5.8678 0.7811 0.8937 36 1 5.8694 0.7809 -0.8863 37 1 8.1805 0.6920 -0.0845 38 1 7.8861 2.2778 -0.8374 39 1 7.3320 2.4873 1.9240 40 1 9.1323 4.2633 2.8559 41 1 9.4257 2.6777 3.6098 42 1 13.8612 5.7540 6.2463 43 1 4.0190 0.3776 0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358326110.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:52 Heat of formation + Delta-G solvation = -148.201214 kcal Electronic energy + Delta-G solvation = -25800.547524 eV Core-core repulsion = 21744.526798 eV Total energy + Delta-G solvation = -4056.020726 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.80050 -40.76290 -40.05260 -39.84144 -36.94089 -35.71498 -34.66624 -32.20326 -31.40249 -30.61067 -29.51571 -28.64112 -27.84591 -27.53304 -24.55561 -23.28951 -22.52005 -21.87407 -20.24386 -19.91318 -18.24213 -17.97106 -17.71613 -17.58927 -17.13414 -17.10064 -17.06877 -16.82907 -16.56952 -16.43445 -16.36847 -15.68360 -15.59609 -15.24508 -14.91112 -14.66259 -14.48455 -13.76237 -13.60159 -13.44888 -13.34912 -13.31073 -13.28990 -13.00010 -12.75839 -12.53414 -12.50377 -12.33155 -12.28616 -12.03687 -11.85227 -11.16521 -11.09743 -10.97915 -10.53623 -10.17222 -9.30356 -9.16281 -8.98955 -8.50864 -6.21751 0.30444 0.34907 0.99388 1.32515 1.47510 1.55443 1.57226 1.75503 2.22472 2.25580 2.27595 2.56270 2.62559 2.72571 2.87209 3.67922 3.87485 3.88946 3.95095 4.02321 4.07483 4.08751 4.23369 4.30070 4.31696 4.35110 4.37035 4.37393 4.47894 4.48605 4.55818 4.71028 4.73161 4.79695 4.97661 5.16394 5.17508 5.34617 5.37625 5.71343 6.11931 6.12065 6.25758 6.42694 6.45966 6.94075 7.16839 8.61550 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019300 B = 0.001798 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.401089 B =15569.891411 C =16327.641283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.326 6.326 3 C 0.196 3.804 4 C -0.330 4.330 5 C 0.196 3.804 6 O -0.330 6.330 7 C 0.016 3.984 8 C -0.245 4.245 9 C 0.203 3.797 10 O -0.318 6.318 11 C 0.050 3.950 12 C 0.122 3.878 13 N -0.712 5.712 14 C 0.537 3.463 15 O -0.562 6.562 16 C -0.113 4.113 17 S -0.173 6.173 18 C -0.530 4.530 19 H 0.061 0.939 20 C 0.044 3.956 21 N -0.917 5.917 22 Si 0.916 3.084 23 H -0.263 1.263 24 H -0.258 1.258 25 H -0.236 1.236 26 C -0.285 4.285 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.121 0.879 30 H 0.159 0.841 31 H 0.067 0.933 32 H 0.120 0.880 33 H 0.069 0.931 34 H 0.132 0.868 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.068 0.932 39 H 0.416 0.584 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.277 0.723 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.593 -11.233 -14.779 38.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.239 6.239 3 C 0.149 3.851 4 C -0.349 4.349 5 C 0.149 3.851 6 O -0.243 6.243 7 C -0.078 4.078 8 C -0.265 4.265 9 C 0.156 3.844 10 O -0.231 6.231 11 C -0.025 4.025 12 C -0.001 4.001 13 N -0.367 5.367 14 C 0.322 3.678 15 O -0.440 6.440 16 C -0.264 4.264 17 S 0.053 5.947 18 C -0.678 4.678 19 H 0.080 0.920 20 C -0.161 4.161 21 N -0.555 5.555 22 Si 0.738 3.262 23 H -0.187 1.187 24 H -0.183 1.183 25 H -0.160 1.160 26 C -0.304 4.304 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.140 0.860 30 H 0.177 0.823 31 H 0.086 0.914 32 H 0.138 0.862 33 H 0.087 0.913 34 H 0.149 0.851 35 H 0.111 0.889 36 H 0.125 0.875 37 H 0.120 0.880 38 H 0.087 0.913 39 H 0.252 0.748 40 H 0.128 0.872 41 H 0.133 0.867 42 H 0.086 0.914 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -31.863 -11.393 -16.035 37.446 hybrid contribution -0.909 0.606 1.418 1.790 sum -32.772 -10.787 -14.617 37.471 Atomic orbital electron populations 1.23415 0.76089 1.05897 1.02455 1.86073 1.23785 1.26261 1.87783 1.18466 0.91494 0.84241 0.90859 1.21334 1.01760 0.90968 1.20865 1.18327 0.90140 0.85288 0.91325 1.86085 1.21379 1.28964 1.87855 1.23425 0.76034 1.05766 1.02544 1.19487 0.90932 0.98260 1.17801 1.18125 0.82350 0.92322 0.91568 1.86132 1.14926 1.34126 1.87934 1.23307 0.89273 0.84769 1.05109 1.21536 0.92821 0.99216 0.86514 1.45742 1.08049 1.61369 1.21496 1.19899 0.82821 0.77904 0.87159 1.90687 1.50658 1.55319 1.47355 1.23277 0.99109 1.04680 0.99308 1.84661 1.07015 1.78101 1.24918 1.22471 0.98253 1.44216 1.02815 0.92041 1.25591 1.01379 0.93128 0.96022 1.70020 1.26264 1.39070 1.20136 0.85845 0.79357 0.81269 0.79756 1.18750 1.18263 1.15969 1.20463 0.93072 0.97747 1.19129 0.91559 0.91431 0.86042 0.82343 0.91392 0.86185 0.91267 0.85052 0.88905 0.87503 0.87996 0.91347 0.74772 0.87186 0.86703 0.91368 0.83013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 113.37 1.11 1.20 16 2 O -0.33 -4.67 10.49 -92.29 -0.97 -5.64 16 3 C 0.20 3.25 6.68 22.48 0.15 3.40 16 4 C -0.33 -4.93 8.02 22.48 0.18 -4.75 16 5 C 0.20 3.66 6.68 22.48 0.15 3.82 16 6 O -0.33 -5.68 10.49 -92.36 -0.97 -6.65 16 7 C 0.02 0.12 9.81 113.37 1.11 1.23 16 8 C -0.25 -5.24 9.92 22.48 0.22 -5.02 16 9 C 0.20 4.01 6.68 22.48 0.15 4.16 16 10 O -0.32 -6.21 10.08 -92.35 -0.93 -7.14 16 11 C 0.05 0.68 4.87 71.98 0.35 1.03 16 12 C 0.12 2.34 6.06 86.38 0.52 2.87 16 13 N -0.71 -17.13 5.50 -463.06 -2.55 -19.68 16 14 C 0.54 18.63 7.85 87.66 0.69 19.32 16 15 O -0.56 -23.95 15.86 -3.01 -0.05 -24.00 16 16 C -0.11 -4.35 6.16 71.24 0.44 -3.91 16 17 S -0.17 -8.89 18.55 -56.49 -1.05 -9.94 16 18 C -0.53 -31.32 10.04 67.95 0.68 -30.63 16 19 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 20 C 0.04 2.62 5.50 84.86 0.47 3.09 16 21 N -0.92 -56.44 13.97 21.65 0.30 -56.14 16 22 Si 0.92 45.50 27.74 68.60 1.90 47.41 16 23 H -0.26 -12.76 7.11 99.48 0.71 -12.06 16 24 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 25 H -0.24 -11.66 6.74 99.48 0.67 -10.99 16 26 C -0.28 -4.90 8.97 22.48 0.20 -4.70 16 27 H 0.07 0.27 7.66 -2.39 -0.02 0.25 16 28 H 0.07 0.25 7.66 -2.39 -0.02 0.23 16 29 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.16 1.41 4.52 -2.91 -0.01 1.40 16 31 H 0.07 0.35 7.65 -2.38 -0.02 0.33 16 32 H 0.12 0.45 8.14 -2.38 -0.02 0.43 16 33 H 0.07 0.33 7.66 -2.39 -0.02 0.31 16 34 H 0.13 2.94 8.06 -2.91 -0.02 2.91 16 35 H 0.09 0.98 7.66 -2.39 -0.02 0.96 16 36 H 0.11 1.01 7.66 -2.38 -0.02 0.99 16 37 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.42 8.04 8.47 -92.71 -0.79 7.26 16 40 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 41 H 0.11 4.03 8.14 -2.40 -0.02 4.01 16 42 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 43 H 0.15 2.06 6.29 -2.91 -0.02 2.04 16 Total: -1.00 -80.00 379.18 2.35 -77.66 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.22 Total: 13.01 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: 6.43 Total: -8.89 kcal Atomic # 7 Polarization: -73.57 SS G_CDS: -2.25 Total: -75.82 kcal Atomic # 8 Polarization: -40.51 SS G_CDS: -2.92 Total: -43.43 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.90 Total: 47.41 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.05 Total: -9.94 kcal Total: -80.00 2.35 -77.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358326110.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.545 kcal (2) G-P(sol) polarization free energy of solvation -80.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds