Wall clock time and date at job start Sat Apr 11 2020 06:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47383 * 2 1 4 4 O 1.42902 * 109.47312 * 179.97438 * 3 2 1 5 5 C 1.35896 * 117.00101 * 179.97438 * 4 3 2 6 6 C 1.38736 * 120.05744 * 180.02562 * 5 4 3 7 7 C 1.38142 * 119.94412 * 179.97438 * 6 5 4 8 8 C 1.38263 * 120.05940 * 359.97438 * 7 6 5 9 9 S 1.76196 * 119.94805 * 179.97438 * 8 7 6 10 10 O 1.42096 * 106.40278 * 336.46591 * 9 8 7 11 11 O 1.42095 * 106.40688 * 203.53990 * 9 8 7 12 12 N 1.65606 * 107.21681 * 90.00051 * 9 8 7 13 13 C 1.47586 * 134.48958 * 90.00111 * 12 9 8 14 14 C 1.53949 * 86.11504 * 155.35964 * 13 12 9 15 15 O 1.42903 * 113.74102 * 269.15490 * 14 13 12 16 16 C 1.50694 * 113.74088 * 137.95266 * 14 13 12 17 17 H 1.08000 * 120.00563 * 1.92388 * 16 14 13 18 18 C 1.37885 * 119.99902 * 181.92552 * 16 14 13 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.47807 * 134.45609 * 269.87124 * 12 9 8 25 25 C 1.38271 * 120.10870 * 0.27661 * 8 7 6 26 26 C 1.38140 * 120.05645 * 359.44927 * 25 8 7 27 27 H 1.09004 * 109.47233 * 60.00414 * 1 2 3 28 28 H 1.09005 * 109.47701 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47396 * 300.00157 * 1 2 3 30 30 H 1.08999 * 109.47082 * 239.99133 * 2 1 3 31 31 H 1.09007 * 109.46726 * 119.99516 * 2 1 3 32 32 H 1.08999 * 109.47720 * 59.99523 * 3 2 1 33 33 H 1.08999 * 109.47119 * 299.99504 * 3 2 1 34 34 H 1.08003 * 120.02453 * 359.95943 * 6 5 4 35 35 H 1.08001 * 119.96857 * 180.02562 * 7 6 5 36 36 H 1.08993 * 113.76952 * 41.05751 * 13 12 9 37 37 H 1.08993 * 113.76905 * 269.65722 * 13 12 9 38 38 H 0.96700 * 113.99800 * 178.07503 * 15 14 13 39 39 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 40 40 H 1.08995 * 113.77163 * 90.38156 * 24 12 9 41 41 H 1.09005 * 113.83876 * 318.91142 * 24 12 9 42 42 H 1.07999 * 119.96789 * 179.70292 * 25 8 7 43 43 H 1.07996 * 120.03375 * 180.27576 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0860 2.6532 0.0001 6 6 5.4714 2.7272 0.0001 7 6 6.0961 3.9592 -0.0009 8 6 5.3420 5.1181 -0.0024 9 16 6.1419 6.6880 -0.0030 10 8 7.4372 6.4786 0.5425 11 8 5.2103 7.6134 0.5399 12 7 6.3658 7.1235 -1.5850 13 6 5.5675 7.8735 -2.5742 14 6 6.9077 8.1834 -3.2653 15 8 7.5215 9.3926 -2.8144 16 6 6.8548 8.0761 -4.7675 17 1 5.9244 7.8331 -5.2591 18 6 7.9943 8.2881 -5.5143 19 7 9.1272 8.5844 -4.9157 20 14 7.9288 8.1543 -7.3764 21 1 9.2758 8.4259 -7.9398 22 1 7.4982 6.7858 -7.7595 23 1 6.9605 9.1456 -7.9101 24 6 7.4467 6.9188 -2.5721 25 6 3.9612 5.0471 0.0028 26 6 3.3316 3.8176 -0.0019 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3635 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5140 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9562 -0.8900 34 1 6.0609 1.8222 0.0012 35 1 7.1746 4.0173 -0.0013 36 1 5.0716 8.7527 -2.1629 37 1 4.9018 7.2468 -3.1676 38 1 8.3778 9.5758 -3.2248 39 1 9.9289 8.7332 -5.4411 40 1 7.3342 6.0111 -3.1649 41 1 8.4486 7.0373 -2.1592 42 1 3.3744 5.9538 0.0065 43 1 2.2530 3.7626 -0.0023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358888072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:56 Heat of formation + Delta-G solvation = -105.083178 kcal Electronic energy + Delta-G solvation = -27439.157575 eV Core-core repulsion = 23385.006588 eV Total energy + Delta-G solvation = -4054.150987 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.42817 -38.44150 -37.83001 -36.73324 -35.36663 -34.37661 -33.87106 -32.16531 -31.27476 -30.30171 -27.75589 -27.04042 -25.28519 -24.61115 -23.37062 -22.83674 -21.60018 -19.61470 -18.74850 -18.36075 -17.50114 -17.19625 -16.71550 -16.50354 -16.38605 -15.40583 -14.99154 -14.86035 -14.59713 -14.32888 -14.24470 -13.86846 -13.63277 -13.38898 -13.13145 -13.04242 -12.85695 -12.83193 -12.52916 -12.13307 -11.82094 -11.70640 -11.64500 -11.59757 -11.55766 -11.45300 -11.08899 -11.08571 -11.07364 -10.82495 -10.65864 -10.52285 -10.23935 -9.29990 -9.23601 -8.75948 -8.73859 -8.54979 -8.03043 -6.33956 -4.44513 0.69895 0.98186 1.15595 2.74484 3.18387 3.23384 3.24828 3.27021 3.60887 4.20545 4.27025 4.33891 4.39690 4.49331 4.56833 4.72429 4.74670 4.90242 4.92209 4.94235 5.13282 5.15612 5.27244 5.40114 5.43007 5.48382 5.57453 5.68859 5.77590 5.81524 6.02330 6.03030 6.04860 6.08860 6.37968 6.38442 6.49184 6.71603 6.79847 7.02849 7.05617 7.53222 7.68629 7.87939 8.57877 9.25827 9.50398 10.72396 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013130 B = 0.002925 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.976275 B = 9569.335371 C =10832.358820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.054 3.946 4 O -0.312 6.312 5 C 0.176 3.824 6 C -0.174 4.174 7 C 0.019 3.981 8 C -0.713 4.713 9 S 2.702 3.298 10 O -0.962 6.962 11 O -0.966 6.966 12 N -1.024 6.024 13 C 0.131 3.869 14 C 0.246 3.754 15 O -0.572 6.572 16 C -0.537 4.537 17 H 0.070 0.930 18 C 0.072 3.928 19 N -0.896 5.896 20 Si 0.907 3.093 21 H -0.285 1.285 22 H -0.275 1.275 23 H -0.274 1.274 24 C 0.105 3.895 25 C 0.020 3.980 26 C -0.232 4.232 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.138 0.862 35 H 0.146 0.854 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.392 0.608 39 H 0.273 0.727 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.142 0.858 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.482 -14.524 7.256 20.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.021 4.021 4 O -0.225 6.225 5 C 0.130 3.870 6 C -0.193 4.193 7 C 0.000 4.000 8 C -0.798 4.798 9 S 2.794 3.206 10 O -0.953 6.953 11 O -0.957 6.957 12 N -0.865 5.865 13 C 0.006 3.994 14 C 0.202 3.798 15 O -0.384 6.384 16 C -0.576 4.576 17 H 0.089 0.911 18 C -0.131 4.131 19 N -0.536 5.536 20 Si 0.734 3.266 21 H -0.211 1.211 22 H -0.200 1.200 23 H -0.199 1.199 24 C -0.020 4.020 25 C 0.001 3.999 26 C -0.252 4.252 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.156 0.844 35 H 0.164 0.836 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.247 0.753 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.159 0.841 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.552 -14.270 8.579 20.852 hybrid contribution -0.043 -0.890 -1.516 1.758 sum -12.595 -15.160 7.063 20.937 Atomic orbital electron populations 1.21696 0.94073 1.02646 1.02356 1.21490 0.96172 0.94601 1.03839 1.22984 0.78041 0.99179 1.01897 1.86072 1.21768 1.27045 1.87659 1.19232 0.92472 0.84040 0.91299 1.20536 0.91364 0.98919 1.08505 1.20772 1.00205 0.90213 0.88804 1.31398 1.05132 1.22978 1.20264 1.01650 0.73248 0.73099 0.72619 1.93530 1.38636 1.86501 1.76633 1.93517 1.64837 1.60429 1.76886 1.60243 1.31690 1.67758 1.26852 1.23075 0.96340 0.93392 0.86634 1.19841 0.87354 0.81845 0.90756 1.86047 1.40961 1.41445 1.69967 1.21509 0.96358 1.49120 0.90600 0.91140 1.25082 0.94969 0.93402 0.99672 1.69403 1.00301 1.47283 1.36598 0.86413 0.77393 0.78795 0.83994 1.21065 1.20006 1.19934 1.23921 0.89763 1.02133 0.86177 1.20721 0.92508 0.98047 0.88624 1.21319 1.00268 0.92343 1.11223 0.92220 0.91619 0.92303 0.90680 0.90767 0.91684 0.91562 0.84386 0.83590 0.90660 0.89939 0.75323 0.91623 0.90418 0.90837 0.84064 0.84803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.91 37.15 0.37 -0.34 16 2 C -0.12 -0.77 6.30 -26.74 -0.17 -0.94 16 3 C 0.05 0.43 4.74 37.15 0.18 0.60 16 4 O -0.31 -3.49 10.14 -19.41 -0.20 -3.68 16 5 C 0.18 2.22 6.69 -39.21 -0.26 1.95 16 6 C -0.17 -2.25 9.99 -39.43 -0.39 -2.65 16 7 C 0.02 0.28 9.51 -39.61 -0.38 -0.10 16 8 C -0.71 -11.25 5.98 -39.56 -0.24 -11.48 16 9 S 2.70 50.96 6.23 -107.50 -0.67 50.29 16 10 O -0.96 -20.24 17.25 -57.17 -0.99 -21.23 16 11 O -0.97 -19.87 17.24 -57.17 -0.99 -20.86 16 12 N -1.02 -20.54 4.12 -118.50 -0.49 -21.03 16 13 C 0.13 2.64 8.37 -2.96 -0.02 2.62 16 14 C 0.25 5.82 1.40 -90.84 -0.13 5.69 16 15 O -0.57 -14.69 13.49 -35.23 -0.48 -15.16 16 16 C -0.54 -13.20 8.61 -34.44 -0.30 -13.50 16 17 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 18 C 0.07 1.77 5.40 -17.82 -0.10 1.67 16 19 N -0.90 -22.70 11.20 55.43 0.62 -22.08 16 20 Si 0.91 19.30 29.54 -169.99 -5.02 14.28 16 21 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 C 0.11 2.28 8.38 -2.84 -0.02 2.26 16 25 C 0.02 0.28 9.52 -39.61 -0.38 -0.09 16 26 C -0.23 -2.83 9.04 -39.43 -0.36 -3.18 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 33 H 0.07 0.48 7.66 -51.93 -0.40 0.08 16 34 H 0.14 1.48 8.06 -52.48 -0.42 1.06 16 35 H 0.15 1.97 7.61 -52.49 -0.40 1.57 16 36 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 37 H 0.08 1.46 8.09 -51.93 -0.42 1.04 16 38 H 0.39 10.16 6.60 45.56 0.30 10.46 16 39 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 40 H 0.08 1.57 8.09 -51.93 -0.42 1.15 16 41 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 42 H 0.14 1.81 7.60 -52.49 -0.40 1.42 16 43 H 0.13 1.24 6.30 -52.49 -0.33 0.91 16 LS Contribution 375.14 15.07 5.65 5.65 Total: -1.00 -30.46 375.14 -10.14 -40.59 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -5.39 Total: 10.71 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -2.20 Total: -17.48 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: 0.13 Total: -43.11 kcal Atomic # 8 Polarization: -58.29 SS G_CDS: -2.64 Total: -60.93 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Atomic # 16 Polarization: 50.96 SS G_CDS: -0.67 Total: 50.29 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.46 -10.14 -40.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358888072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.489 kcal (2) G-P(sol) polarization free energy of solvation -30.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds