Wall clock time and date at job start Sat Apr 11 2020 06:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47383 * 2 1 4 4 O 1.42902 * 109.47312 * 179.97438 * 3 2 1 5 5 C 1.35896 * 117.00101 * 179.97438 * 4 3 2 6 6 C 1.38736 * 120.05744 * 180.02562 * 5 4 3 7 7 C 1.38142 * 119.94412 * 179.97438 * 6 5 4 8 8 C 1.38263 * 120.05940 * 359.97438 * 7 6 5 9 9 S 1.76196 * 119.94805 * 179.97438 * 8 7 6 10 10 O 1.42096 * 106.40278 * 336.46591 * 9 8 7 11 11 O 1.42095 * 106.40688 * 203.53990 * 9 8 7 12 12 N 1.65606 * 107.21681 * 90.00051 * 9 8 7 13 13 C 1.47586 * 134.48958 * 90.00111 * 12 9 8 14 14 C 1.53949 * 86.11504 * 155.35964 * 13 12 9 15 15 O 1.42903 * 113.74102 * 269.15490 * 14 13 12 16 16 C 1.50694 * 113.74088 * 137.95266 * 14 13 12 17 17 H 1.08000 * 120.00563 * 1.92388 * 16 14 13 18 18 C 1.37885 * 119.99902 * 181.92552 * 16 14 13 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.47807 * 134.45609 * 269.87124 * 12 9 8 25 25 C 1.38271 * 120.10870 * 0.27661 * 8 7 6 26 26 C 1.38140 * 120.05645 * 359.44927 * 25 8 7 27 27 H 1.09004 * 109.47233 * 60.00414 * 1 2 3 28 28 H 1.09005 * 109.47701 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47396 * 300.00157 * 1 2 3 30 30 H 1.08999 * 109.47082 * 239.99133 * 2 1 3 31 31 H 1.09007 * 109.46726 * 119.99516 * 2 1 3 32 32 H 1.08999 * 109.47720 * 59.99523 * 3 2 1 33 33 H 1.08999 * 109.47119 * 299.99504 * 3 2 1 34 34 H 1.08003 * 120.02453 * 359.95943 * 6 5 4 35 35 H 1.08001 * 119.96857 * 180.02562 * 7 6 5 36 36 H 1.08993 * 113.76952 * 41.05751 * 13 12 9 37 37 H 1.08993 * 113.76905 * 269.65722 * 13 12 9 38 38 H 0.96700 * 113.99800 * 178.07503 * 15 14 13 39 39 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 40 40 H 1.08995 * 113.77163 * 90.38156 * 24 12 9 41 41 H 1.09005 * 113.83876 * 318.91142 * 24 12 9 42 42 H 1.07999 * 119.96789 * 179.70292 * 25 8 7 43 43 H 1.07996 * 120.03375 * 180.27576 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0860 2.6532 0.0001 6 6 5.4714 2.7272 0.0001 7 6 6.0961 3.9592 -0.0009 8 6 5.3420 5.1181 -0.0024 9 16 6.1419 6.6880 -0.0030 10 8 7.4372 6.4786 0.5425 11 8 5.2103 7.6134 0.5399 12 7 6.3658 7.1235 -1.5850 13 6 5.5675 7.8735 -2.5742 14 6 6.9077 8.1834 -3.2653 15 8 7.5215 9.3926 -2.8144 16 6 6.8548 8.0761 -4.7675 17 1 5.9244 7.8331 -5.2591 18 6 7.9943 8.2881 -5.5143 19 7 9.1272 8.5844 -4.9157 20 14 7.9288 8.1543 -7.3764 21 1 9.2758 8.4259 -7.9398 22 1 7.4982 6.7858 -7.7595 23 1 6.9605 9.1456 -7.9101 24 6 7.4467 6.9188 -2.5721 25 6 3.9612 5.0471 0.0028 26 6 3.3316 3.8176 -0.0019 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3635 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5140 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9562 -0.8900 34 1 6.0609 1.8222 0.0012 35 1 7.1746 4.0173 -0.0013 36 1 5.0716 8.7527 -2.1629 37 1 4.9018 7.2468 -3.1676 38 1 8.3778 9.5758 -3.2248 39 1 9.9289 8.7332 -5.4411 40 1 7.3342 6.0111 -3.1649 41 1 8.4486 7.0373 -2.1592 42 1 3.3744 5.9538 0.0065 43 1 2.2530 3.7626 -0.0023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358888072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:55 Heat of formation + Delta-G solvation = -126.958387 kcal Electronic energy + Delta-G solvation = -27440.106155 eV Core-core repulsion = 23385.006588 eV Total energy + Delta-G solvation = -4055.099568 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.34156 -40.16408 -38.76497 -38.32025 -36.96088 -35.72651 -34.90982 -34.07948 -32.28434 -31.31154 -29.52837 -27.63950 -26.95483 -26.39114 -24.27746 -23.83783 -22.22898 -21.36190 -20.03256 -19.47459 -19.28474 -18.59558 -18.08928 -17.50755 -17.36959 -17.08773 -16.52941 -15.99563 -15.85210 -15.56461 -15.20988 -15.12907 -14.89459 -14.72191 -14.66795 -14.33235 -13.88770 -13.74088 -13.59567 -13.37297 -13.27149 -13.22291 -13.18577 -13.01252 -12.79839 -12.55606 -12.46302 -12.30718 -12.22956 -12.13471 -12.01027 -11.85410 -11.62281 -11.07111 -10.59229 -10.30206 -10.25987 -9.88052 -9.63686 -8.19416 -6.36575 -0.68466 -0.21978 0.13997 1.50972 1.52858 1.60031 1.88195 1.97073 2.40283 2.44244 2.81186 3.01048 3.12854 3.55650 3.68029 3.69660 3.90527 3.91511 4.08029 4.17675 4.23269 4.31969 4.34328 4.38367 4.51614 4.51958 4.71156 4.72243 4.73495 4.80338 4.83635 4.97649 5.03187 5.03717 5.10811 5.14915 5.15606 5.26823 5.32119 5.49964 5.75992 5.84408 6.02557 6.18592 6.69939 7.36201 7.51633 8.86034 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013130 B = 0.002925 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.976275 B = 9569.335371 C =10832.358820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C 0.043 3.957 4 O -0.318 6.318 5 C 0.181 3.819 6 C -0.177 4.177 7 C 0.008 3.992 8 C -0.721 4.721 9 S 2.714 3.286 10 O -0.992 6.992 11 O -0.987 6.987 12 N -1.030 6.030 13 C 0.137 3.863 14 C 0.218 3.782 15 O -0.588 6.588 16 C -0.551 4.551 17 H 0.078 0.922 18 C 0.028 3.972 19 N -0.920 5.920 20 Si 0.968 3.032 21 H -0.287 1.287 22 H -0.267 1.267 23 H -0.273 1.273 24 C 0.112 3.888 25 C 0.012 3.988 26 C -0.226 4.226 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.158 0.842 35 H 0.148 0.852 36 H 0.074 0.926 37 H 0.112 0.888 38 H 0.386 0.614 39 H 0.274 0.726 40 H 0.092 0.908 41 H 0.054 0.946 42 H 0.151 0.849 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.800 -16.653 6.789 23.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.031 4.031 4 O -0.231 6.231 5 C 0.133 3.867 6 C -0.196 4.196 7 C -0.012 4.012 8 C -0.811 4.811 9 S 2.812 3.188 10 O -0.983 6.983 11 O -0.978 6.978 12 N -0.870 5.870 13 C 0.012 3.988 14 C 0.174 3.826 15 O -0.400 6.400 16 C -0.590 4.590 17 H 0.096 0.904 18 C -0.173 4.173 19 N -0.560 5.560 20 Si 0.794 3.206 21 H -0.213 1.213 22 H -0.192 1.192 23 H -0.199 1.199 24 C -0.013 4.013 25 C -0.008 4.008 26 C -0.245 4.245 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.176 0.824 35 H 0.165 0.835 36 H 0.092 0.908 37 H 0.129 0.871 38 H 0.240 0.760 39 H 0.083 0.917 40 H 0.110 0.890 41 H 0.073 0.927 42 H 0.169 0.831 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -14.869 -16.357 8.110 23.546 hybrid contribution 0.568 -0.368 -1.289 1.456 sum -14.300 -16.726 6.821 23.039 Atomic orbital electron populations 1.21693 0.92794 1.03284 1.02763 1.21504 0.97149 0.93552 1.03652 1.23327 0.76233 1.00562 1.03003 1.86090 1.23710 1.26241 1.87024 1.19377 0.92541 0.84797 0.89953 1.20751 0.92103 0.98931 1.07850 1.20882 1.00464 0.90537 0.89307 1.30728 1.05932 1.20793 1.23606 1.00828 0.72569 0.73787 0.71646 1.93486 1.40585 1.87208 1.77013 1.93481 1.65031 1.62272 1.77040 1.60072 1.31325 1.68718 1.26874 1.23104 0.95186 0.93980 0.86486 1.20257 0.89408 0.81702 0.91185 1.86033 1.40752 1.42945 1.70239 1.21799 0.96723 1.49076 0.91361 0.90399 1.25808 0.94697 0.93207 1.03549 1.69497 1.00742 1.47951 1.37845 0.85449 0.77039 0.78902 0.79237 1.21300 1.19201 1.19852 1.23697 0.89238 1.01897 0.86513 1.20929 0.91779 0.99437 0.88629 1.21610 1.01898 0.91237 1.09749 0.91903 0.90939 0.91802 0.91015 0.90886 0.90410 0.90535 0.82407 0.83461 0.90765 0.87053 0.76039 0.91673 0.89040 0.92722 0.83146 0.81615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 71.98 0.71 -0.27 16 2 C -0.12 -1.19 6.30 30.59 0.19 -0.99 16 3 C 0.04 0.54 4.74 71.98 0.34 0.88 16 4 O -0.32 -6.12 10.14 -92.38 -0.94 -7.05 16 5 C 0.18 4.03 6.69 22.51 0.15 4.18 16 6 C -0.18 -4.21 9.99 22.37 0.22 -3.99 16 7 C 0.01 0.21 9.51 22.25 0.21 0.42 16 8 C -0.72 -22.06 5.98 22.28 0.13 -21.93 16 9 S 2.71 103.18 6.23 -56.49 -0.35 102.82 16 10 O -0.99 -42.77 17.25 -128.00 -2.21 -44.98 16 11 O -0.99 -40.78 17.24 -128.00 -2.21 -42.99 16 12 N -1.03 -41.49 4.12 -532.66 -2.19 -43.68 16 13 C 0.14 5.49 8.37 86.49 0.72 6.21 16 14 C 0.22 10.40 1.40 -10.88 -0.02 10.38 16 15 O -0.59 -31.10 13.49 -148.98 -2.01 -33.11 16 16 C -0.55 -26.96 8.61 25.60 0.22 -26.74 16 17 H 0.08 3.59 7.81 -2.91 -0.02 3.57 16 18 C 0.03 1.36 5.40 84.66 0.46 1.82 16 19 N -0.92 -47.33 11.20 21.45 0.24 -47.09 16 20 Si 0.97 39.24 29.54 68.60 2.03 41.27 16 21 H -0.29 -11.64 7.11 99.48 0.71 -10.94 16 22 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 23 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 24 C 0.11 4.94 8.38 86.45 0.72 5.66 16 25 C 0.01 0.30 9.52 22.25 0.21 0.52 16 26 C -0.23 -4.78 9.04 22.37 0.20 -4.58 16 27 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 28 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 29 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.08 0.80 7.66 -2.39 -0.02 0.78 16 33 H 0.08 0.83 7.66 -2.39 -0.02 0.81 16 34 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 35 H 0.15 3.96 7.61 -2.91 -0.02 3.93 16 36 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 37 H 0.11 3.76 8.09 -2.39 -0.02 3.74 16 38 H 0.39 20.82 6.60 -74.06 -0.49 20.33 16 39 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 40 H 0.09 3.70 8.09 -2.39 -0.02 3.68 16 41 H 0.05 2.56 8.14 -2.38 -0.02 2.54 16 42 H 0.15 3.57 7.60 -2.91 -0.02 3.55 16 43 H 0.17 2.36 6.30 -2.91 -0.02 2.34 16 Total: -1.00 -65.13 375.14 -2.61 -67.74 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: 0.54 Total: 35.50 kcal Atomic # 6 Polarization: -32.92 SS G_CDS: 4.49 Total: -28.43 kcal Atomic # 7 Polarization: -88.82 SS G_CDS: -1.95 Total: -90.77 kcal Atomic # 8 Polarization: -120.78 SS G_CDS: -7.36 Total: -128.14 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.27 kcal Atomic # 16 Polarization: 103.18 SS G_CDS: -0.35 Total: 102.82 kcal Total: -65.13 -2.61 -67.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358888072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.219 kcal (2) G-P(sol) polarization free energy of solvation -65.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds