Wall clock time and date at job start Sat Apr 11 2020 06:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35902 * 116.99654 * 2 1 4 4 C 1.38792 * 120.08429 * 0.02562 * 3 2 1 5 5 C 1.38005 * 119.92921 * 180.02562 * 4 3 2 6 6 C 1.38551 * 120.39040 * 359.97438 * 5 4 3 7 7 C 1.38427 * 119.91553 * 359.85068 * 6 5 4 8 8 C 1.38452 * 120.08025 * 179.97438 * 3 2 1 9 9 O 1.35852 * 121.80383 * 180.47825 * 7 6 5 10 10 C 1.42823 * 117.86624 * 342.74267 * 9 7 6 11 11 C 1.53422 * 108.35605 * 49.22276 * 10 9 7 12 12 C 1.50797 * 118.70907 * 179.83480 * 6 5 4 13 13 H 1.08997 * 109.43165 * 282.21674 * 12 6 5 14 14 N 1.46497 * 109.43707 * 42.12639 * 12 6 5 15 15 S 1.65592 * 120.00163 * 216.04891 * 14 12 6 16 16 O 1.42095 * 104.27566 * 309.09074 * 15 14 12 17 17 O 1.42098 * 104.27934 * 181.23101 * 15 14 12 18 18 C 1.81400 * 104.44877 * 65.16266 * 15 14 12 19 19 C 1.52999 * 109.47173 * 175.25473 * 18 15 14 20 20 C 1.50702 * 109.47457 * 179.97438 * 19 18 15 21 21 H 1.07998 * 119.99781 * 0.02562 * 20 19 18 22 22 C 1.37872 * 120.00364 * 180.02562 * 20 19 18 23 23 N 1.31520 * 119.99901 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00071 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46861 * 90.00143 * 24 22 20 26 26 H 1.48501 * 109.46669 * 209.99528 * 24 22 20 27 27 H 1.48498 * 109.46978 * 329.99859 * 24 22 20 28 28 H 1.09007 * 109.47390 * 300.00014 * 1 2 3 29 29 H 1.09002 * 109.47487 * 59.99502 * 1 2 3 30 30 H 1.09000 * 109.47099 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.03584 * 0.02562 * 4 3 2 32 32 H 1.07992 * 119.80628 * 179.97438 * 5 4 3 33 33 H 1.08003 * 119.90843 * 0.02562 * 8 3 2 34 34 H 1.08999 * 109.68508 * 168.92841 * 10 9 7 35 35 H 1.08997 * 109.68455 * 289.45229 * 10 9 7 36 36 H 1.08996 * 109.70298 * 175.55134 * 11 10 9 37 37 H 1.09009 * 109.69383 * 54.95349 * 11 10 9 38 38 H 0.97003 * 119.99477 * 36.04547 * 14 12 6 39 39 H 1.09003 * 109.47299 * 295.25387 * 18 15 14 40 40 H 1.08995 * 109.47143 * 55.25514 * 18 15 14 41 41 H 1.08994 * 109.47208 * 300.00078 * 19 18 15 42 42 H 1.09004 * 109.47127 * 59.99737 * 19 18 15 43 43 H 0.97001 * 119.99706 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2916 2.3760 0.0005 5 6 1.9214 3.6040 0.0000 6 6 3.3047 3.6823 -0.0005 7 6 4.0617 2.5234 0.0026 8 6 3.4284 1.2854 0.0005 9 8 5.4198 2.5554 0.0118 10 6 6.0613 3.7772 -0.3563 11 6 5.4138 4.9206 0.4357 12 6 3.9532 5.0437 -0.0049 13 1 3.9125 5.4614 -1.0108 14 7 3.2380 5.9273 0.9191 15 16 3.0511 7.5314 0.5532 16 8 4.3631 7.9728 0.2322 17 8 2.3506 8.0659 1.6680 18 6 1.9977 7.5390 -0.9236 19 6 1.6520 8.9822 -1.2960 20 6 0.7774 8.9886 -2.5233 21 1 0.4959 8.0566 -2.9906 22 6 0.3366 10.1843 -3.0495 23 7 0.6790 11.3193 -2.4801 24 14 -0.7481 10.1921 -4.5703 25 1 -2.1744 10.1317 -4.1613 26 1 -0.5072 11.4368 -5.3436 27 1 -0.4249 9.0142 -5.4148 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2130 2.3217 0.0014 32 1 1.3325 4.5092 0.0000 33 1 4.0165 0.3795 0.0005 34 1 7.1233 3.7207 -0.1177 35 1 5.9339 3.9513 -1.4247 36 1 5.9393 5.8532 0.2307 37 1 5.4584 4.6999 1.5023 38 1 2.8739 5.5726 1.7453 39 1 2.5283 7.0675 -1.7508 40 1 1.0805 6.9871 -0.7185 41 1 1.1215 9.4537 -0.4689 42 1 2.5693 9.5342 -1.5011 43 1 0.3685 12.1605 -2.8501 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000365609232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:12 Heat of formation + Delta-G solvation = -129.201642 kcal Electronic energy + Delta-G solvation = -27854.207535 eV Core-core repulsion = 23799.010693 eV Total energy + Delta-G solvation = -4055.196842 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.11714 -39.56516 -36.96885 -36.67691 -35.91392 -35.47304 -33.94488 -31.58838 -31.22179 -30.62313 -30.04688 -27.54006 -25.66093 -25.13037 -23.48936 -22.69483 -21.76024 -20.33118 -19.06626 -18.78286 -17.70069 -17.25404 -16.77211 -16.57709 -16.22638 -16.07476 -15.75187 -15.39859 -15.28438 -14.90170 -14.58764 -14.49967 -13.88474 -13.68323 -13.54202 -13.43199 -13.09396 -12.68413 -12.57390 -12.36460 -12.02181 -11.81377 -11.76552 -11.66513 -11.58072 -11.36134 -11.31364 -11.11338 -11.01118 -10.88169 -10.61594 -10.46596 -10.43180 -9.90415 -9.60633 -9.11453 -8.71763 -8.54000 -8.24718 -6.16158 -4.21980 0.67718 1.12465 1.16640 2.65670 3.01359 3.23246 3.29814 3.32260 3.38799 3.52784 4.13954 4.32537 4.36008 4.48076 4.53780 4.59814 4.66814 4.78887 4.84708 4.86461 4.86585 5.01361 5.13981 5.18274 5.19259 5.28228 5.39943 5.42213 5.56745 5.60454 5.70294 5.80037 5.97471 6.02309 6.05842 6.24227 6.29152 6.42122 6.99685 7.05729 7.21628 7.24974 7.31276 7.76649 8.13035 8.81421 9.43109 10.94829 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010750 B = 0.003376 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.996234 B = 8291.971685 C = 9842.835262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.163 3.837 4 C -0.239 4.239 5 C -0.028 4.028 6 C -0.207 4.207 7 C 0.185 3.815 8 C -0.190 4.190 9 O -0.313 6.313 10 C 0.063 3.937 11 C -0.179 4.179 12 C 0.207 3.793 13 H 0.097 0.903 14 N -1.119 6.119 15 S 2.589 3.411 16 O -0.965 6.965 17 O -0.963 6.963 18 C -0.591 4.591 19 C 0.029 3.971 20 C -0.521 4.521 21 H 0.061 0.939 22 C 0.058 3.942 23 N -0.890 5.890 24 Si 0.900 3.100 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.273 1.273 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.138 0.862 34 H 0.114 0.886 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.415 0.585 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.035 0.965 42 H 0.032 0.968 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.808 -21.552 5.217 22.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.118 3.882 4 C -0.258 4.258 5 C -0.047 4.047 6 C -0.210 4.210 7 C 0.138 3.862 8 C -0.209 4.209 9 O -0.227 6.227 10 C -0.012 4.012 11 C -0.218 4.218 12 C 0.099 3.901 13 H 0.114 0.886 14 N -0.874 5.874 15 S 2.687 3.313 16 O -0.954 6.954 17 O -0.954 6.954 18 C -0.724 4.724 19 C -0.010 4.010 20 C -0.560 4.560 21 H 0.080 0.920 22 C -0.144 4.144 23 N -0.528 5.528 24 Si 0.727 3.273 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.198 1.198 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.118 0.882 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.156 0.844 34 H 0.132 0.868 35 H 0.089 0.911 36 H 0.122 0.878 37 H 0.103 0.897 38 H 0.248 0.752 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.494 -20.892 5.609 22.319 hybrid contribution -1.502 -0.054 -0.984 1.796 sum 3.992 -20.946 4.625 21.819 Atomic orbital electron populations 1.23098 0.77950 1.04002 1.01759 1.86048 1.21686 1.26766 1.88401 1.18565 0.91411 0.84236 0.94037 1.21148 1.00329 0.91982 1.12335 1.20739 0.93043 0.97603 0.93302 1.19848 0.94430 0.93790 1.12937 1.18204 0.82390 0.92090 0.93492 1.19539 0.91430 0.96771 1.13201 1.85971 1.16057 1.37263 1.83415 1.23078 0.97261 0.81600 0.99275 1.22818 0.96107 1.00852 1.01995 1.19311 0.90248 0.87334 0.93173 0.88569 1.55997 1.71018 1.28976 1.31408 1.05709 0.76071 0.72113 0.77439 1.93540 1.36850 1.79142 1.85910 1.93565 1.75796 1.76176 1.49839 1.30482 1.13786 1.10774 1.17380 1.18957 0.98501 0.84707 0.98849 1.20989 1.31204 0.92847 1.10998 0.92044 1.25064 0.96325 0.95505 0.97548 1.69955 1.44818 0.97598 1.40415 0.86475 0.80649 0.77674 0.82525 1.20456 1.20976 1.19758 0.92391 0.92327 0.88181 0.85045 0.84916 0.84403 0.86843 0.91067 0.87790 0.89681 0.75165 0.86301 0.86090 0.94676 0.94934 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.16 10.50 -19.43 -0.20 -3.37 16 3 C 0.16 1.78 6.68 -39.30 -0.26 1.52 16 4 C -0.24 -2.46 9.04 -39.46 -0.36 -2.82 16 5 C -0.03 -0.31 9.20 -39.55 -0.36 -0.67 16 6 C -0.21 -2.36 5.49 -104.39 -0.57 -2.94 16 7 C 0.18 2.14 6.47 -39.21 -0.25 1.89 16 8 C -0.19 -2.15 9.87 -39.20 -0.39 -2.53 16 9 O -0.31 -3.45 10.27 -19.28 -0.20 -3.64 16 10 C 0.06 0.56 7.03 37.38 0.26 0.82 16 11 C -0.18 -1.86 5.80 -26.48 -0.15 -2.02 16 12 C 0.21 2.39 2.69 -69.00 -0.19 2.20 16 13 H 0.10 1.06 7.27 -51.93 -0.38 0.68 16 14 N -1.12 -13.93 4.59 -5.81 -0.03 -13.96 16 15 S 2.59 43.85 5.37 -107.50 -0.58 43.27 16 16 O -0.96 -18.60 17.48 -57.54 -1.01 -19.61 16 17 O -0.96 -19.43 18.08 -57.54 -1.04 -20.47 16 18 C -0.59 -10.70 5.87 37.16 0.22 -10.49 16 19 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 20 C -0.52 -14.06 9.11 -34.44 -0.31 -14.38 16 21 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 22 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 23 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 24 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 H 0.06 0.32 7.66 -51.93 -0.40 -0.07 16 29 H 0.06 0.34 7.67 -51.93 -0.40 -0.06 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.13 1.09 6.31 -52.49 -0.33 0.76 16 32 H 0.13 1.34 7.69 -52.49 -0.40 0.94 16 33 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 34 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.10 1.14 7.81 -51.93 -0.41 0.73 16 37 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 38 H 0.41 4.52 8.72 -34.47 -0.30 4.22 16 39 H 0.12 1.92 7.61 -51.92 -0.39 1.52 16 40 H 0.12 1.93 8.14 -51.93 -0.42 1.51 16 41 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 369.76 15.07 5.57 5.57 Total: -1.00 -35.22 369.76 -9.31 -44.53 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -5.93 Total: 3.34 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: -1.61 Total: -26.16 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.71 Total: -39.31 kcal Atomic # 8 Polarization: -44.65 SS G_CDS: -2.45 Total: -47.09 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 43.85 SS G_CDS: -0.58 Total: 43.27 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.22 -9.31 -44.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365609232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.667 kcal (2) G-P(sol) polarization free energy of solvation -35.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds