Wall clock time and date at job start Sat Apr 11 2020 06:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35902 * 116.99654 * 2 1 4 4 C 1.38792 * 120.08429 * 0.02562 * 3 2 1 5 5 C 1.38005 * 119.92921 * 180.02562 * 4 3 2 6 6 C 1.38551 * 120.39040 * 359.97438 * 5 4 3 7 7 C 1.38427 * 119.91553 * 359.85068 * 6 5 4 8 8 C 1.38452 * 120.08025 * 179.97438 * 3 2 1 9 9 O 1.35852 * 121.80383 * 180.47825 * 7 6 5 10 10 C 1.42823 * 117.86624 * 342.74267 * 9 7 6 11 11 C 1.53422 * 108.35605 * 49.22276 * 10 9 7 12 12 C 1.50797 * 118.70907 * 179.83480 * 6 5 4 13 13 H 1.08997 * 109.43165 * 282.21674 * 12 6 5 14 14 N 1.46497 * 109.43707 * 42.12639 * 12 6 5 15 15 S 1.65592 * 120.00163 * 216.04891 * 14 12 6 16 16 O 1.42095 * 104.27566 * 309.09074 * 15 14 12 17 17 O 1.42098 * 104.27934 * 181.23101 * 15 14 12 18 18 C 1.81400 * 104.44877 * 65.16266 * 15 14 12 19 19 C 1.52999 * 109.47173 * 175.25473 * 18 15 14 20 20 C 1.50702 * 109.47457 * 179.97438 * 19 18 15 21 21 H 1.07998 * 119.99781 * 0.02562 * 20 19 18 22 22 C 1.37872 * 120.00364 * 180.02562 * 20 19 18 23 23 N 1.31520 * 119.99901 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00071 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46861 * 90.00143 * 24 22 20 26 26 H 1.48501 * 109.46669 * 209.99528 * 24 22 20 27 27 H 1.48498 * 109.46978 * 329.99859 * 24 22 20 28 28 H 1.09007 * 109.47390 * 300.00014 * 1 2 3 29 29 H 1.09002 * 109.47487 * 59.99502 * 1 2 3 30 30 H 1.09000 * 109.47099 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.03584 * 0.02562 * 4 3 2 32 32 H 1.07992 * 119.80628 * 179.97438 * 5 4 3 33 33 H 1.08003 * 119.90843 * 0.02562 * 8 3 2 34 34 H 1.08999 * 109.68508 * 168.92841 * 10 9 7 35 35 H 1.08997 * 109.68455 * 289.45229 * 10 9 7 36 36 H 1.08996 * 109.70298 * 175.55134 * 11 10 9 37 37 H 1.09009 * 109.69383 * 54.95349 * 11 10 9 38 38 H 0.97003 * 119.99477 * 36.04547 * 14 12 6 39 39 H 1.09003 * 109.47299 * 295.25387 * 18 15 14 40 40 H 1.08995 * 109.47143 * 55.25514 * 18 15 14 41 41 H 1.08994 * 109.47208 * 300.00078 * 19 18 15 42 42 H 1.09004 * 109.47127 * 59.99737 * 19 18 15 43 43 H 0.97001 * 119.99706 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2916 2.3760 0.0005 5 6 1.9214 3.6040 0.0000 6 6 3.3047 3.6823 -0.0005 7 6 4.0617 2.5234 0.0026 8 6 3.4284 1.2854 0.0005 9 8 5.4198 2.5554 0.0118 10 6 6.0613 3.7772 -0.3563 11 6 5.4138 4.9206 0.4357 12 6 3.9532 5.0437 -0.0049 13 1 3.9125 5.4614 -1.0108 14 7 3.2380 5.9273 0.9191 15 16 3.0511 7.5314 0.5532 16 8 4.3631 7.9728 0.2322 17 8 2.3506 8.0659 1.6680 18 6 1.9977 7.5390 -0.9236 19 6 1.6520 8.9822 -1.2960 20 6 0.7774 8.9886 -2.5233 21 1 0.4959 8.0566 -2.9906 22 6 0.3366 10.1843 -3.0495 23 7 0.6790 11.3193 -2.4801 24 14 -0.7481 10.1921 -4.5703 25 1 -2.1744 10.1317 -4.1613 26 1 -0.5072 11.4368 -5.3436 27 1 -0.4249 9.0142 -5.4148 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2130 2.3217 0.0014 32 1 1.3325 4.5092 0.0000 33 1 4.0165 0.3795 0.0005 34 1 7.1233 3.7207 -0.1177 35 1 5.9339 3.9513 -1.4247 36 1 5.9393 5.8532 0.2307 37 1 5.4584 4.6999 1.5023 38 1 2.8739 5.5726 1.7453 39 1 2.5283 7.0675 -1.7508 40 1 1.0805 6.9871 -0.7185 41 1 1.1215 9.4537 -0.4689 42 1 2.5693 9.5342 -1.5011 43 1 0.3685 12.1605 -2.8501 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000365609232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:11 Heat of formation + Delta-G solvation = -155.181410 kcal Electronic energy + Delta-G solvation = -27855.334103 eV Core-core repulsion = 23799.010693 eV Total energy + Delta-G solvation = -4056.323410 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.91780 -40.29489 -38.20705 -37.73997 -37.05825 -36.75690 -35.88828 -33.12540 -32.49432 -31.40821 -30.85817 -28.11797 -27.59300 -25.95190 -24.28808 -23.62113 -23.51927 -21.14708 -20.37876 -19.53528 -19.17584 -18.45133 -18.00113 -17.62787 -17.18591 -17.04024 -16.75103 -16.57885 -16.49216 -16.20788 -15.94288 -15.40470 -15.07121 -14.69791 -14.58998 -14.45635 -14.29312 -13.84498 -13.72586 -13.32082 -13.23230 -13.17420 -13.10257 -13.03210 -12.92908 -12.78402 -12.61966 -12.24935 -12.16969 -12.10255 -12.01973 -11.73090 -11.63686 -11.44940 -11.20443 -10.63743 -10.50248 -9.52578 -9.05165 -8.25234 -6.38821 -0.72240 0.28691 0.35160 1.41756 1.42982 1.54066 1.78609 1.96955 2.38450 2.63009 2.75198 2.78250 3.08649 3.25458 3.46695 3.66065 3.76436 3.86692 3.90102 4.03747 4.11222 4.15564 4.19381 4.37149 4.42252 4.42856 4.53681 4.61720 4.68365 4.74297 4.77002 4.84697 4.97039 5.15841 5.17323 5.26069 5.29346 5.30406 5.44898 5.48168 5.69559 6.02607 6.07544 6.33503 6.44178 6.75107 7.31481 8.86954 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010750 B = 0.003376 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.996234 B = 8291.971685 C = 9842.835262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.330 6.330 3 C 0.160 3.840 4 C -0.240 4.240 5 C -0.037 4.037 6 C -0.213 4.213 7 C 0.178 3.822 8 C -0.204 4.204 9 O -0.322 6.322 10 C 0.062 3.938 11 C -0.179 4.179 12 C 0.199 3.801 13 H 0.103 0.897 14 N -1.099 6.099 15 S 2.618 3.382 16 O -0.988 6.988 17 O -0.997 6.997 18 C -0.590 4.590 19 C 0.021 3.979 20 C -0.537 4.537 21 H 0.076 0.924 22 C -0.003 4.003 23 N -0.934 5.934 24 Si 0.971 3.029 25 H -0.271 1.271 26 H -0.284 1.284 27 H -0.258 1.258 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.120 0.880 31 H 0.151 0.849 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.425 0.575 39 H 0.142 0.858 40 H 0.146 0.854 41 H 0.007 0.993 42 H 0.007 0.993 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.144 -23.672 4.333 24.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.243 6.243 3 C 0.114 3.886 4 C -0.259 4.259 5 C -0.055 4.055 6 C -0.216 4.216 7 C 0.131 3.869 8 C -0.223 4.223 9 O -0.235 6.235 10 C -0.013 4.013 11 C -0.218 4.218 12 C 0.092 3.908 13 H 0.121 0.879 14 N -0.858 5.858 15 S 2.715 3.285 16 O -0.978 6.978 17 O -0.987 6.987 18 C -0.722 4.722 19 C -0.018 4.018 20 C -0.576 4.576 21 H 0.095 0.905 22 C -0.201 4.201 23 N -0.574 5.574 24 Si 0.795 3.205 25 H -0.197 1.197 26 H -0.210 1.210 27 H -0.182 1.182 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.139 0.861 31 H 0.169 0.831 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.156 0.844 35 H 0.099 0.901 36 H 0.117 0.883 37 H 0.103 0.897 38 H 0.261 0.739 39 H 0.160 0.840 40 H 0.164 0.836 41 H 0.026 0.974 42 H 0.025 0.975 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.821 -23.030 4.727 23.999 hybrid contribution -1.280 0.498 -0.662 1.524 sum 3.541 -22.531 4.066 23.167 Atomic orbital electron populations 1.23385 0.76091 1.05704 1.02471 1.86038 1.23650 1.26454 1.88184 1.18694 0.91466 0.84840 0.93624 1.21364 1.01356 0.91504 1.11633 1.20922 0.93010 0.98262 0.93346 1.19799 0.94678 0.93380 1.13708 1.18310 0.82711 0.92225 0.93662 1.19706 0.91981 0.96932 1.13663 1.85967 1.15856 1.38213 1.83503 1.23280 0.98215 0.80231 0.99575 1.22806 0.95384 1.01327 1.02313 1.19543 0.90812 0.87270 0.93169 0.87888 1.55507 1.70940 1.27390 1.31992 1.04579 0.74946 0.72745 0.76202 1.93508 1.37861 1.80359 1.86055 1.93515 1.76401 1.77785 1.51048 1.30376 1.15806 1.06811 1.19201 1.18808 0.96842 0.88524 0.97597 1.21512 1.31023 0.93480 1.11561 0.90547 1.26084 0.97899 0.95161 1.00996 1.70102 1.46513 0.98371 1.42392 0.85352 0.78671 0.78025 0.78454 1.19657 1.20984 1.18154 0.91558 0.91656 0.86144 0.83149 0.84118 0.84146 0.84372 0.90119 0.88319 0.89728 0.73885 0.83972 0.83628 0.97432 0.97491 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.30 16 2 O -0.33 -6.07 10.50 -92.45 -0.97 -7.04 16 3 C 0.16 3.24 6.68 22.45 0.15 3.39 16 4 C -0.24 -4.44 9.04 22.35 0.20 -4.24 16 5 C -0.04 -0.73 9.20 22.29 0.21 -0.53 16 6 C -0.21 -4.49 5.49 -19.71 -0.11 -4.60 16 7 C 0.18 3.87 6.47 22.51 0.15 4.02 16 8 C -0.20 -4.38 9.87 22.52 0.22 -4.15 16 9 O -0.32 -6.58 10.27 -91.89 -0.94 -7.53 16 10 C 0.06 0.98 7.03 72.12 0.51 1.48 16 11 C -0.18 -3.47 5.80 30.76 0.18 -3.29 16 12 C 0.20 4.26 2.69 44.30 0.12 4.38 16 13 H 0.10 2.06 7.27 -2.39 -0.02 2.04 16 14 N -1.10 -25.83 4.59 -172.31 -0.79 -26.62 16 15 S 2.62 87.56 5.37 -56.49 -0.30 87.25 16 16 O -0.99 -37.97 17.48 -127.65 -2.23 -40.20 16 17 O -1.00 -40.39 18.08 -127.65 -2.31 -42.70 16 18 C -0.59 -20.81 5.87 71.98 0.42 -20.39 16 19 C 0.02 1.07 4.98 29.85 0.15 1.22 16 20 C -0.54 -28.87 9.11 25.60 0.23 -28.64 16 21 H 0.08 3.77 7.74 -2.91 -0.02 3.75 16 22 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 23 N -0.93 -55.98 13.29 21.45 0.28 -55.69 16 24 Si 0.97 42.42 29.54 68.60 2.03 44.45 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 26 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 27 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 28 H 0.07 0.58 7.66 -2.38 -0.02 0.56 16 29 H 0.06 0.60 7.67 -2.39 -0.02 0.58 16 30 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.15 2.10 6.31 -2.91 -0.02 2.08 16 32 H 0.14 2.49 7.69 -2.91 -0.02 2.47 16 33 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 34 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.10 2.04 7.81 -2.39 -0.02 2.02 16 37 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.42 8.60 8.72 -96.74 -0.84 7.76 16 39 H 0.14 4.31 7.61 -2.39 -0.02 4.30 16 40 H 0.15 4.37 8.14 -2.39 -0.02 4.35 16 41 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -76.41 369.76 -1.04 -77.45 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.19 Total: 20.39 kcal Atomic # 6 Polarization: -53.76 SS G_CDS: 4.00 Total: -49.76 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -0.51 Total: -82.32 kcal Atomic # 8 Polarization: -91.01 SS G_CDS: -6.45 Total: -97.46 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: 87.56 SS G_CDS: -0.30 Total: 87.25 kcal Total: -76.41 -1.04 -77.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365609232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.731 kcal (2) G-P(sol) polarization free energy of solvation -76.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds