Wall clock time and date at job start Sat Apr 11 2020 06:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35998 * 117.00040 * 2 1 4 4 C 1.38404 * 119.93894 * 359.97307 * 3 2 1 5 5 C 1.38245 * 119.89714 * 180.02562 * 4 3 2 6 6 C 1.38106 * 120.01749 * 359.91360 * 5 4 3 7 7 C 1.38596 * 120.41949 * 0.02951 * 6 5 4 8 8 C 1.38217 * 119.86578 * 0.12138 * 7 6 5 9 9 O 1.35934 * 121.83577 * 179.69457 * 8 7 6 10 10 C 1.42829 * 117.84757 * 17.10941 * 9 8 7 11 11 C 1.53419 * 108.34495 * 310.84906 * 10 9 8 12 12 C 1.50786 * 118.73024 * 180.13830 * 7 6 5 13 13 H 1.08998 * 109.42865 * 77.67248 * 12 7 6 14 14 N 1.46500 * 109.43287 * 317.76685 * 12 7 6 15 15 S 1.65596 * 119.99881 * 125.39339 * 14 12 7 16 16 O 1.42102 * 104.27977 * 308.98469 * 15 14 12 17 17 O 1.42101 * 104.27937 * 181.12938 * 15 14 12 18 18 C 1.81399 * 104.45295 * 65.05885 * 15 14 12 19 19 C 1.53001 * 109.47415 * 180.02562 * 18 15 14 20 20 C 1.50702 * 109.46848 * 180.02562 * 19 18 15 21 21 H 1.07998 * 120.00329 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99511 * 179.72723 * 20 19 18 23 23 N 1.31518 * 119.99849 * 180.27734 * 22 20 19 24 24 Si 1.86798 * 120.00116 * 0.26899 * 22 20 19 25 25 H 1.48497 * 109.47069 * 90.00609 * 24 22 20 26 26 H 1.48499 * 109.47071 * 210.00257 * 24 22 20 27 27 H 1.48493 * 109.47282 * 330.00340 * 24 22 20 28 28 H 1.08996 * 109.47221 * 299.99985 * 1 2 3 29 29 H 1.09004 * 109.47122 * 60.00538 * 1 2 3 30 30 H 1.09000 * 109.47121 * 179.97438 * 1 2 3 31 31 H 1.08006 * 120.05179 * 0.02562 * 4 3 2 32 32 H 1.07998 * 119.99304 * 179.97438 * 5 4 3 33 33 H 1.08008 * 119.78689 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.68487 * 70.57676 * 10 9 8 35 35 H 1.09000 * 109.68433 * 191.14174 * 10 9 8 36 36 H 1.08995 * 109.70044 * 305.02746 * 11 10 9 37 37 H 1.09006 * 109.69968 * 184.42710 * 11 10 9 38 38 H 0.96996 * 120.00230 * 305.39357 * 14 12 7 39 39 H 1.08996 * 109.47178 * 59.99548 * 18 15 14 40 40 H 1.09002 * 109.46710 * 300.00031 * 18 15 14 41 41 H 1.08992 * 109.47213 * 60.00102 * 19 18 15 42 42 H 1.08997 * 109.46580 * 299.99384 * 19 18 15 43 43 H 0.96997 * 120.00366 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2914 2.3717 -0.0006 5 6 1.9199 3.6030 -0.0011 6 6 3.2991 3.6747 0.0007 7 6 4.0620 2.5176 0.0025 8 6 3.4401 1.2832 -0.0001 9 8 4.1488 0.1232 -0.0047 10 6 5.5272 0.1821 0.3648 11 6 6.1920 1.3141 -0.4293 12 6 5.5648 2.6402 0.0077 13 1 5.9049 2.8877 1.0132 14 7 5.9706 3.7000 -0.9188 15 16 6.9297 4.9412 -0.3882 16 8 6.2730 5.4176 0.7784 17 8 7.0905 5.7725 -1.5294 18 6 8.5010 4.1453 0.0460 19 6 9.4834 5.2011 0.5570 20 6 10.7889 4.5399 0.9171 21 1 10.9060 3.4734 0.7942 22 6 11.8354 5.2974 1.3987 23 7 12.9766 4.7213 1.7078 24 14 11.6326 7.1421 1.6119 25 1 11.1228 7.4295 2.9767 26 1 12.9457 7.8095 1.4233 27 1 10.6682 7.6537 0.6053 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2128 2.3150 -0.0006 32 1 1.3323 4.5091 -0.0020 33 1 3.7863 4.6387 0.0007 34 1 5.6129 0.3829 1.4327 35 1 6.0114 -0.7655 0.1288 36 1 6.0249 1.1622 -1.4956 37 1 7.2623 1.3283 -0.2229 38 1 5.6774 3.6747 -1.8431 39 1 8.9171 3.6578 -0.8356 40 1 8.3289 3.4024 0.8248 41 1 9.0671 5.6882 1.4387 42 1 9.6555 5.9442 -0.2215 43 1 13.7130 5.2542 2.0462 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377634334.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:19 Heat of formation + Delta-G solvation = -122.220980 kcal Electronic energy + Delta-G solvation = -27953.216761 eV Core-core repulsion = 23898.322623 eV Total energy + Delta-G solvation = -4054.894138 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.16570 -39.14160 -37.27793 -36.78711 -35.92142 -35.62982 -34.00923 -31.60050 -31.47727 -30.68655 -29.89240 -27.53857 -26.03709 -25.13461 -23.89991 -22.25070 -21.38617 -20.45863 -19.19752 -18.52624 -17.92082 -17.43492 -16.99449 -16.86455 -16.34802 -16.02919 -15.67320 -15.37080 -15.10974 -14.94366 -14.79618 -14.34512 -14.18793 -13.69072 -13.59656 -13.38670 -13.07774 -12.85240 -12.39803 -12.17852 -12.04088 -11.94823 -11.87587 -11.77894 -11.71792 -11.39125 -11.30420 -11.26388 -11.22484 -11.07138 -10.78420 -10.49330 -10.22420 -9.93747 -9.58568 -9.31529 -8.76479 -8.69804 -8.02040 -6.20184 -4.21817 0.53548 1.02760 1.25772 2.84292 3.01866 3.10043 3.23965 3.31622 3.35378 3.52659 4.02472 4.26546 4.32617 4.39708 4.51489 4.54409 4.65040 4.73529 4.85853 4.87542 4.91003 5.00026 5.11551 5.12963 5.18880 5.25465 5.29183 5.37397 5.40710 5.45067 5.53351 5.69973 5.90853 5.97644 6.17839 6.21204 6.36010 6.45739 6.75817 6.85930 6.86554 6.93985 7.39221 7.50435 8.32160 8.80412 9.39361 10.92079 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022131 B = 0.002848 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.915502 B = 9830.512982 C =10604.921045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.307 6.307 3 C 0.093 3.907 4 C -0.175 4.175 5 C -0.116 4.116 6 C -0.098 4.098 7 C -0.137 4.137 8 C 0.116 3.884 9 O -0.305 6.305 10 C 0.062 3.938 11 C -0.179 4.179 12 C 0.200 3.800 13 H 0.108 0.892 14 N -1.114 6.114 15 S 2.584 3.416 16 O -0.962 6.962 17 O -0.963 6.963 18 C -0.582 4.582 19 C -0.007 4.007 20 C -0.520 4.520 21 H 0.078 0.922 22 C 0.072 3.928 23 N -0.895 5.895 24 Si 0.869 3.131 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.262 1.262 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.099 0.901 31 H 0.133 0.867 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.069 0.931 35 H 0.114 0.886 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.416 0.584 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.029 0.971 42 H 0.033 0.967 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.796 -9.356 -4.313 25.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.220 6.220 3 C 0.048 3.952 4 C -0.194 4.194 5 C -0.135 4.135 6 C -0.116 4.116 7 C -0.140 4.140 8 C 0.070 3.930 9 O -0.219 6.219 10 C -0.014 4.014 11 C -0.218 4.218 12 C 0.092 3.908 13 H 0.125 0.875 14 N -0.869 5.869 15 S 2.682 3.318 16 O -0.952 6.952 17 O -0.953 6.953 18 C -0.716 4.716 19 C -0.046 4.046 20 C -0.559 4.559 21 H 0.096 0.904 22 C -0.131 4.131 23 N -0.533 5.533 24 Si 0.695 3.305 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.186 1.186 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.151 0.849 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.088 0.912 35 H 0.132 0.868 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.250 0.750 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.047 0.953 42 H 0.051 0.949 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.815 -8.763 -4.068 25.700 hybrid contribution 0.214 0.660 -0.147 0.709 sum -23.601 -8.103 -4.215 25.307 Atomic orbital electron populations 1.23048 0.78779 1.03855 1.01135 1.86167 1.20789 1.25946 1.89123 1.18375 0.89275 0.85160 1.02408 1.21055 0.99847 0.91664 1.06809 1.20843 0.94434 0.97083 1.01120 1.20952 0.93429 0.98132 0.99136 1.19801 0.95797 0.91847 1.06517 1.17869 0.87930 0.85351 1.01857 1.86089 1.23480 1.28330 1.83986 1.23036 0.78989 1.00309 0.99065 1.22793 1.02239 0.94277 1.02472 1.19422 0.89826 0.87718 0.93865 0.87453 1.55857 1.68008 1.42220 1.20864 1.05817 0.77201 0.74305 0.74499 1.93568 1.72656 1.78103 1.50901 1.93574 1.86940 1.64390 1.50431 1.30333 1.17415 1.12551 1.11275 1.19414 0.95368 0.93109 0.96739 1.20827 0.94329 0.96374 1.44368 0.90379 1.24987 0.94995 0.98664 0.94453 1.69876 1.03304 1.36274 1.43797 0.86929 0.78201 0.85746 0.79602 1.19650 1.20735 1.18625 0.92774 0.92829 0.88302 0.84906 0.85405 0.85026 0.91225 0.86782 0.89316 0.88329 0.74984 0.85288 0.85729 0.95324 0.94915 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.43 10.21 -35.82 -0.37 -3.79 16 3 C 0.09 1.09 6.70 -39.03 -0.26 0.83 16 4 C -0.17 -1.72 9.03 -39.52 -0.36 -2.08 16 5 C -0.12 -1.20 10.04 -39.63 -0.40 -1.60 16 6 C -0.10 -1.18 9.26 -39.50 -0.37 -1.55 16 7 C -0.14 -1.66 5.56 -104.46 -0.58 -2.24 16 8 C 0.12 1.45 6.48 -39.10 -0.25 1.19 16 9 O -0.30 -3.68 10.00 -35.62 -0.36 -4.04 16 10 C 0.06 0.56 7.03 37.37 0.26 0.82 16 11 C -0.18 -1.65 5.80 -26.48 -0.15 -1.80 16 12 C 0.20 2.25 2.82 -69.01 -0.19 2.06 16 13 H 0.11 1.20 7.58 -51.93 -0.39 0.81 16 14 N -1.11 -13.21 4.48 -5.82 -0.03 -13.23 16 15 S 2.58 41.30 5.35 -107.50 -0.57 40.72 16 16 O -0.96 -17.70 17.56 -57.54 -1.01 -18.71 16 17 O -0.96 -18.18 18.08 -57.54 -1.04 -19.22 16 18 C -0.58 -9.96 6.01 37.16 0.22 -9.74 16 19 C -0.01 -0.16 4.05 -27.88 -0.11 -0.27 16 20 C -0.52 -14.12 9.66 -34.44 -0.33 -14.45 16 21 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 22 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 23 N -0.89 -26.61 13.96 55.43 0.77 -25.83 16 24 Si 0.87 21.15 27.47 -169.99 -4.67 16.48 16 25 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 27 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 28 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 29 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.13 0.94 6.28 -52.48 -0.33 0.61 16 32 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.13 1.68 7.69 -52.48 -0.40 1.27 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.42 4.22 8.92 -34.46 -0.31 3.92 16 39 H 0.13 1.99 8.14 -51.93 -0.42 1.56 16 40 H 0.12 1.86 8.14 -51.92 -0.42 1.44 16 41 H 0.03 0.65 7.58 -51.93 -0.39 0.25 16 42 H 0.03 0.76 7.19 -51.93 -0.37 0.38 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 367.49 15.07 5.54 5.54 Total: -1.00 -35.85 367.49 -9.33 -45.18 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -5.96 Total: 2.65 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: -1.63 Total: -25.72 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.75 Total: -39.07 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -2.77 Total: -45.77 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Atomic # 16 Polarization: 41.30 SS G_CDS: -0.57 Total: 40.72 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.85 -9.33 -45.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377634334.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.045 kcal (2) G-P(sol) polarization free energy of solvation -35.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds