Wall clock time and date at job start Sat Apr 11 2020 06:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35998 * 117.00040 * 2 1 4 4 C 1.38404 * 119.93894 * 359.97307 * 3 2 1 5 5 C 1.38245 * 119.89714 * 180.02562 * 4 3 2 6 6 C 1.38106 * 120.01749 * 359.91360 * 5 4 3 7 7 C 1.38596 * 120.41949 * 0.02951 * 6 5 4 8 8 C 1.38217 * 119.86578 * 0.12138 * 7 6 5 9 9 O 1.35934 * 121.83577 * 179.69457 * 8 7 6 10 10 C 1.42829 * 117.84757 * 17.10941 * 9 8 7 11 11 C 1.53419 * 108.34495 * 310.84906 * 10 9 8 12 12 C 1.50786 * 118.73024 * 180.13830 * 7 6 5 13 13 H 1.08998 * 109.42865 * 77.67248 * 12 7 6 14 14 N 1.46500 * 109.43287 * 317.76685 * 12 7 6 15 15 S 1.65596 * 119.99881 * 125.39339 * 14 12 7 16 16 O 1.42102 * 104.27977 * 308.98469 * 15 14 12 17 17 O 1.42101 * 104.27937 * 181.12938 * 15 14 12 18 18 C 1.81399 * 104.45295 * 65.05885 * 15 14 12 19 19 C 1.53001 * 109.47415 * 180.02562 * 18 15 14 20 20 C 1.50702 * 109.46848 * 180.02562 * 19 18 15 21 21 H 1.07998 * 120.00329 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99511 * 179.72723 * 20 19 18 23 23 N 1.31518 * 119.99849 * 180.27734 * 22 20 19 24 24 Si 1.86798 * 120.00116 * 0.26899 * 22 20 19 25 25 H 1.48497 * 109.47069 * 90.00609 * 24 22 20 26 26 H 1.48499 * 109.47071 * 210.00257 * 24 22 20 27 27 H 1.48493 * 109.47282 * 330.00340 * 24 22 20 28 28 H 1.08996 * 109.47221 * 299.99985 * 1 2 3 29 29 H 1.09004 * 109.47122 * 60.00538 * 1 2 3 30 30 H 1.09000 * 109.47121 * 179.97438 * 1 2 3 31 31 H 1.08006 * 120.05179 * 0.02562 * 4 3 2 32 32 H 1.07998 * 119.99304 * 179.97438 * 5 4 3 33 33 H 1.08008 * 119.78689 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.68487 * 70.57676 * 10 9 8 35 35 H 1.09000 * 109.68433 * 191.14174 * 10 9 8 36 36 H 1.08995 * 109.70044 * 305.02746 * 11 10 9 37 37 H 1.09006 * 109.69968 * 184.42710 * 11 10 9 38 38 H 0.96996 * 120.00230 * 305.39357 * 14 12 7 39 39 H 1.08996 * 109.47178 * 59.99548 * 18 15 14 40 40 H 1.09002 * 109.46710 * 300.00031 * 18 15 14 41 41 H 1.08992 * 109.47213 * 60.00102 * 19 18 15 42 42 H 1.08997 * 109.46580 * 299.99384 * 19 18 15 43 43 H 0.96997 * 120.00366 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2914 2.3717 -0.0006 5 6 1.9199 3.6030 -0.0011 6 6 3.2991 3.6747 0.0007 7 6 4.0620 2.5176 0.0025 8 6 3.4401 1.2832 -0.0001 9 8 4.1488 0.1232 -0.0047 10 6 5.5272 0.1821 0.3648 11 6 6.1920 1.3141 -0.4293 12 6 5.5648 2.6402 0.0077 13 1 5.9049 2.8877 1.0132 14 7 5.9706 3.7000 -0.9188 15 16 6.9297 4.9412 -0.3882 16 8 6.2730 5.4176 0.7784 17 8 7.0905 5.7725 -1.5294 18 6 8.5010 4.1453 0.0460 19 6 9.4834 5.2011 0.5570 20 6 10.7889 4.5399 0.9171 21 1 10.9060 3.4734 0.7942 22 6 11.8354 5.2974 1.3987 23 7 12.9766 4.7213 1.7078 24 14 11.6326 7.1421 1.6119 25 1 11.1228 7.4295 2.9767 26 1 12.9457 7.8095 1.4233 27 1 10.6682 7.6537 0.6053 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2128 2.3150 -0.0006 32 1 1.3323 4.5091 -0.0020 33 1 3.7863 4.6387 0.0007 34 1 5.6129 0.3829 1.4327 35 1 6.0114 -0.7655 0.1288 36 1 6.0249 1.1622 -1.4956 37 1 7.2623 1.3283 -0.2229 38 1 5.6774 3.6747 -1.8431 39 1 8.9171 3.6578 -0.8356 40 1 8.3289 3.4024 0.8248 41 1 9.0671 5.6882 1.4387 42 1 9.6555 5.9442 -0.2215 43 1 13.7130 5.2542 2.0462 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377634334.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:18 Heat of formation + Delta-G solvation = -148.633339 kcal Electronic energy + Delta-G solvation = -27954.362087 eV Core-core repulsion = 23898.322623 eV Total energy + Delta-G solvation = -4056.039464 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.96704 -39.89181 -38.28202 -37.99105 -37.07931 -36.77359 -35.88685 -33.47024 -32.37396 -31.52728 -30.66538 -28.12103 -27.88100 -25.95637 -24.69361 -23.19092 -23.05797 -21.26333 -20.43840 -19.43758 -19.33585 -18.65236 -18.18927 -17.72359 -17.37804 -17.05912 -16.81770 -16.37793 -16.25613 -16.03605 -15.84034 -15.59587 -15.26727 -14.96677 -14.81656 -14.48044 -14.08804 -13.81383 -13.76544 -13.27716 -13.24493 -13.15339 -13.06043 -12.97494 -12.94761 -12.83664 -12.72767 -12.23581 -12.10845 -11.97244 -11.92277 -11.81734 -11.69458 -11.58649 -11.29224 -10.83020 -10.60532 -9.59070 -8.84032 -8.35194 -6.40411 -0.77210 0.19341 0.41561 1.32653 1.35143 1.44372 1.71182 2.30424 2.32895 2.34474 2.68434 2.73255 2.99100 3.20970 3.42412 3.67222 3.77909 3.83230 3.94508 4.00477 4.08652 4.14405 4.21811 4.34527 4.41824 4.43907 4.47993 4.57263 4.58843 4.64996 4.69276 4.77255 4.94674 5.08551 5.08974 5.16562 5.18769 5.34410 5.48619 5.53143 5.67036 6.00805 6.14120 6.18164 6.62559 6.66074 7.23979 8.80090 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022131 B = 0.002848 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.915502 B = 9830.512982 C =10604.921045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.329 6.329 3 C 0.081 3.919 4 C -0.170 4.170 5 C -0.116 4.116 6 C -0.119 4.119 7 C -0.144 4.144 8 C 0.098 3.902 9 O -0.320 6.320 10 C 0.056 3.944 11 C -0.175 4.175 12 C 0.192 3.808 13 H 0.107 0.893 14 N -1.097 6.097 15 S 2.616 3.384 16 O -0.985 6.985 17 O -0.991 6.991 18 C -0.587 4.587 19 C -0.018 4.018 20 C -0.524 4.524 21 H 0.053 0.947 22 C 0.013 3.987 23 N -0.940 5.940 24 Si 0.922 3.078 25 H -0.261 1.261 26 H -0.276 1.276 27 H -0.250 1.250 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.116 0.884 31 H 0.162 0.838 32 H 0.150 0.850 33 H 0.121 0.879 34 H 0.074 0.926 35 H 0.137 0.863 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.426 0.574 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.032 0.968 42 H 0.031 0.969 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.963 -9.345 -4.666 27.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.243 6.243 3 C 0.036 3.964 4 C -0.188 4.188 5 C -0.134 4.134 6 C -0.138 4.138 7 C -0.147 4.147 8 C 0.052 3.948 9 O -0.235 6.235 10 C -0.019 4.019 11 C -0.214 4.214 12 C 0.085 3.915 13 H 0.125 0.875 14 N -0.855 5.855 15 S 2.713 3.287 16 O -0.975 6.975 17 O -0.981 6.981 18 C -0.719 4.719 19 C -0.057 4.057 20 C -0.563 4.563 21 H 0.072 0.928 22 C -0.185 4.185 23 N -0.579 5.579 24 Si 0.745 3.255 25 H -0.186 1.186 26 H -0.201 1.201 27 H -0.173 1.173 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.134 0.866 31 H 0.180 0.820 32 H 0.168 0.832 33 H 0.139 0.861 34 H 0.092 0.908 35 H 0.154 0.846 36 H 0.111 0.889 37 H 0.130 0.870 38 H 0.263 0.737 39 H 0.164 0.836 40 H 0.163 0.837 41 H 0.050 0.950 42 H 0.049 0.951 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -25.991 -8.755 -4.431 27.781 hybrid contribution 0.768 0.510 -0.046 0.923 sum -25.223 -8.244 -4.477 26.911 Atomic orbital electron populations 1.23353 0.76554 1.05488 1.02291 1.86135 1.23193 1.25945 1.89071 1.18655 0.89438 0.86011 1.02345 1.21361 1.01235 0.90770 1.05455 1.21135 0.93981 0.98283 1.00006 1.21029 0.94466 0.97680 1.00582 1.19828 0.95999 0.91908 1.06957 1.18092 0.88638 0.85472 1.02643 1.86066 1.24708 1.28470 1.84224 1.23271 0.77942 1.01344 0.99351 1.22791 1.02772 0.93057 1.02758 1.19622 0.89961 0.88245 0.93678 0.87521 1.55390 1.66823 1.41705 1.21598 1.04651 0.76564 0.74096 0.73407 1.93539 1.72923 1.78937 1.52083 1.93532 1.87328 1.65861 1.51367 1.30322 1.17189 1.11743 1.12663 1.19379 0.94815 0.94499 0.97019 1.21169 0.96217 0.95594 1.43280 0.92842 1.25851 0.94819 1.03304 0.94551 1.70002 1.04326 1.38076 1.45543 0.86066 0.78679 0.80471 0.80275 1.18586 1.20139 1.17313 0.91585 0.91569 0.86617 0.82046 0.83210 0.86073 0.90802 0.84573 0.88885 0.87022 0.73701 0.83617 0.83693 0.94992 0.95104 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -6.91 10.21 -78.15 -0.80 -7.71 16 3 C 0.08 1.80 6.70 22.63 0.15 1.95 16 4 C -0.17 -2.99 9.03 22.31 0.20 -2.79 16 5 C -0.12 -2.19 10.04 22.24 0.22 -1.97 16 6 C -0.12 -2.77 9.26 22.32 0.21 -2.56 16 7 C -0.14 -3.37 5.56 -19.76 -0.11 -3.48 16 8 C 0.10 2.36 6.48 22.58 0.15 2.50 16 9 O -0.32 -7.47 10.00 -77.42 -0.77 -8.24 16 10 C 0.06 0.94 7.03 72.12 0.51 1.44 16 11 C -0.17 -2.94 5.80 30.76 0.18 -2.76 16 12 C 0.19 4.11 2.82 44.29 0.12 4.24 16 13 H 0.11 2.28 7.58 -2.39 -0.02 2.26 16 14 N -1.10 -24.51 4.48 -172.32 -0.77 -25.28 16 15 S 2.62 80.37 5.35 -56.49 -0.30 80.07 16 16 O -0.99 -35.25 17.56 -127.65 -2.24 -37.49 16 17 O -0.99 -36.27 18.08 -127.65 -2.31 -38.57 16 18 C -0.59 -19.31 6.01 71.98 0.43 -18.88 16 19 C -0.02 -0.81 4.05 29.85 0.12 -0.69 16 20 C -0.52 -28.57 9.66 25.60 0.25 -28.33 16 21 H 0.05 3.09 7.99 -2.91 -0.02 3.07 16 22 C 0.01 0.76 5.47 84.65 0.46 1.22 16 23 N -0.94 -56.83 13.96 21.45 0.30 -56.53 16 24 Si 0.92 43.12 27.47 68.60 1.88 45.01 16 25 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 26 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 27 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 28 H 0.07 0.54 7.66 -2.39 -0.02 0.53 16 29 H 0.07 0.54 7.66 -2.38 -0.02 0.52 16 30 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.16 1.78 6.28 -2.91 -0.02 1.76 16 32 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 33 H 0.12 3.02 7.69 -2.91 -0.02 3.00 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.11 1.57 8.14 -2.38 -0.02 1.56 16 38 H 0.43 8.05 8.92 -96.75 -0.86 7.18 16 39 H 0.15 4.26 8.14 -2.39 -0.02 4.24 16 40 H 0.14 4.11 8.14 -2.39 -0.02 4.09 16 41 H 0.03 1.41 7.58 -2.39 -0.02 1.39 16 42 H 0.03 1.39 7.19 -2.39 -0.02 1.37 16 43 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -77.50 367.49 -0.89 -78.39 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.12 Total: 19.16 kcal Atomic # 6 Polarization: -52.80 SS G_CDS: 4.01 Total: -48.79 kcal Atomic # 7 Polarization: -81.34 SS G_CDS: -0.47 Total: -81.81 kcal Atomic # 8 Polarization: -85.89 SS G_CDS: -6.12 Total: -92.01 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.88 Total: 45.01 kcal Atomic # 16 Polarization: 80.37 SS G_CDS: -0.30 Total: 80.07 kcal Total: -77.50 -0.89 -78.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377634334.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.246 kcal (2) G-P(sol) polarization free energy of solvation -77.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds