Wall clock time and date at job start Sat Apr 11 2020 06:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 113.99772 * 2 1 4 4 C 1.52998 * 109.46851 * 180.02562 * 3 2 1 5 5 N 1.46492 * 109.47394 * 64.99817 * 4 3 2 6 6 C 1.36933 * 120.00262 * 274.99758 * 5 4 3 7 7 H 1.08000 * 120.00065 * 141.99707 * 6 5 4 8 8 C 1.38819 * 120.00130 * 321.99849 * 6 5 4 9 9 N 1.31620 * 120.00248 * 157.96998 * 8 6 5 10 10 Si 1.86802 * 119.99682 * 337.97233 * 8 6 5 11 11 H 1.48501 * 109.47079 * 95.31414 * 10 8 6 12 12 H 1.48498 * 109.46765 * 215.31281 * 10 8 6 13 13 H 1.48499 * 109.47271 * 335.31605 * 10 8 6 14 14 S 1.65604 * 120.00006 * 95.00052 * 5 4 3 15 15 O 1.42103 * 106.40254 * 198.87349 * 14 5 4 16 16 O 1.42100 * 106.39992 * 331.79868 * 14 5 4 17 17 C 1.76204 * 107.21932 * 85.33545 * 14 5 4 18 18 C 1.38287 * 120.11556 * 274.37277 * 17 14 5 19 19 C 1.37932 * 120.35240 * 179.97438 * 18 17 14 20 20 C 1.39290 * 120.23765 * 0.54394 * 19 18 17 21 21 C 1.38880 * 118.87523 * 359.41485 * 20 19 18 22 22 C 1.37749 * 120.78657 * 0.42392 * 21 20 19 23 23 C 1.51644 * 107.03729 * 180.67960 * 21 20 19 24 24 C 1.54701 * 101.91999 * 15.47617 * 23 21 20 25 25 H 1.08999 * 110.75193 * 93.01745 * 24 23 21 26 26 C 1.53005 * 110.74572 * 216.18568 * 24 23 21 27 27 O 1.36129 * 129.88641 * 179.09736 * 20 19 18 28 28 H 1.09004 * 109.46812 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46965 * 299.99967 * 1 2 3 30 30 H 1.09000 * 109.47314 * 60.00262 * 1 2 3 31 31 H 1.08995 * 109.47163 * 59.99595 * 3 2 1 32 32 H 1.08997 * 109.46875 * 300.00032 * 3 2 1 33 33 H 1.09005 * 109.46583 * 184.99942 * 4 3 2 34 34 H 1.09007 * 109.46883 * 304.99476 * 4 3 2 35 35 H 0.96994 * 120.00047 * 180.02562 * 9 8 6 36 36 H 1.07998 * 119.82480 * 0.17002 * 18 17 14 37 37 H 1.08001 * 119.88128 * 180.32276 * 19 18 17 38 38 H 1.08003 * 120.00661 * 179.77060 * 22 21 20 39 39 H 1.08997 * 110.93954 * 133.63478 * 23 21 20 40 40 H 1.08999 * 110.93995 * 257.28099 * 23 21 20 41 41 H 1.09000 * 109.47436 * 60.00210 * 26 24 23 42 42 H 1.09001 * 109.47184 * 179.97438 * 26 24 23 43 43 H 1.08992 * 109.47260 * 299.99696 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2526 6 6 3.9988 -0.7996 -1.3699 7 1 3.7145 -1.2665 -2.3013 8 6 4.3878 -1.5825 -0.2915 9 7 4.0160 -2.8434 -0.2255 10 14 5.4388 -0.8463 1.0661 11 1 4.5647 -0.3894 2.1762 12 1 6.3849 -1.8733 1.5715 13 1 6.2023 0.3089 0.5297 14 16 4.4454 1.5130 -2.5262 15 8 4.3805 0.6914 -3.6839 16 8 3.7327 2.7359 -2.4000 17 6 6.1472 1.9021 -2.2870 18 6 6.5084 2.9824 -1.5030 19 6 7.8391 3.2911 -1.3120 20 6 8.8312 2.5231 -1.9172 21 6 8.4560 1.4401 -2.7015 22 6 7.1265 1.1317 -2.8881 23 6 9.7317 0.7941 -3.2063 24 6 10.7967 1.4186 -2.2742 25 1 10.9737 0.7808 -1.4082 26 6 12.1005 1.6717 -3.0340 27 8 10.1852 2.6578 -1.8778 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.9784 2.1766 0.0889 34 1 3.8514 0.5683 0.8410 35 1 4.2875 -3.3902 0.5282 36 1 5.7446 3.5858 -1.0351 37 1 8.1128 4.1334 -0.6939 38 1 6.8489 0.2887 -3.5035 39 1 9.6945 -0.2885 -3.0851 40 1 9.9185 1.0614 -4.2464 41 1 11.9121 2.3561 -3.8611 42 1 12.8348 2.1114 -2.3591 43 1 12.4833 0.7283 -3.4230 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414457444.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:30 Heat of formation + Delta-G solvation = -104.525870 kcal Electronic energy + Delta-G solvation = -28894.621946 eV Core-core repulsion = 24840.495125 eV Total energy + Delta-G solvation = -4054.126821 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.04543 -37.54804 -37.27107 -35.89569 -35.51023 -34.47245 -33.18005 -32.21494 -31.05071 -29.88575 -29.05316 -26.59311 -25.82524 -24.24383 -22.67594 -22.24550 -21.71549 -21.61111 -18.39358 -17.52928 -17.30479 -16.93224 -16.63184 -16.27815 -15.90958 -15.44069 -15.37323 -14.74812 -14.35623 -14.27374 -13.99423 -13.64384 -13.50879 -13.08505 -13.01549 -12.97308 -12.83853 -12.54569 -12.44799 -12.27210 -12.10758 -12.03817 -11.63713 -11.38589 -11.04326 -10.97172 -10.85967 -10.77935 -10.75637 -10.58189 -10.52289 -10.17461 -10.12827 -9.86406 -9.11740 -8.90604 -8.66216 -8.24593 -8.06831 -6.66592 -4.05399 1.25067 1.58478 1.67001 2.99888 3.14474 3.17913 3.19108 3.72369 4.00229 4.20990 4.43123 4.45349 4.47614 4.77337 4.81391 4.95443 4.97734 5.08032 5.19494 5.36686 5.46249 5.49765 5.59928 5.62692 5.68913 5.73736 5.75055 5.83006 5.85263 5.87711 5.90889 5.93570 6.01040 6.17600 6.20222 6.32311 6.43426 6.53257 6.64495 6.80399 6.94009 7.32714 7.42838 7.88895 8.24057 8.86731 8.93066 10.39346 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015727 B = 0.004354 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.958178 B = 6429.257230 C = 7087.896990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.352 6.352 3 C 0.053 3.947 4 C 0.122 3.878 5 N -0.819 5.819 6 C -0.220 4.220 7 H 0.123 0.877 8 C 0.076 3.924 9 N -0.813 5.813 10 Si 0.870 3.130 11 H -0.266 1.266 12 H -0.286 1.286 13 H -0.255 1.255 14 S 2.525 3.475 15 O -0.975 6.975 16 O -1.003 7.003 17 C -0.681 4.681 18 C -0.003 4.003 19 C -0.163 4.163 20 C 0.131 3.869 21 C -0.201 4.201 22 C 0.026 3.974 23 C -0.104 4.104 24 C 0.074 3.926 25 H 0.087 0.913 26 C -0.147 4.147 27 O -0.305 6.305 28 H 0.081 0.919 29 H 0.028 0.972 30 H 0.034 0.966 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.280 0.720 36 H 0.138 0.862 37 H 0.127 0.873 38 H 0.140 0.860 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.528 6.024 1.556 9.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.270 6.270 3 C -0.026 4.026 4 C -0.005 4.005 5 N -0.642 5.642 6 C -0.371 4.371 7 H 0.140 0.860 8 C -0.141 4.141 9 N -0.450 5.450 10 Si 0.696 3.304 11 H -0.193 1.193 12 H -0.212 1.212 13 H -0.178 1.178 14 S 2.629 3.371 15 O -0.964 6.964 16 O -0.993 6.993 17 C -0.759 4.759 18 C -0.022 4.022 19 C -0.183 4.183 20 C 0.086 3.914 21 C -0.202 4.202 22 C 0.007 3.993 23 C -0.141 4.141 24 C 0.018 3.982 25 H 0.104 0.896 26 C -0.204 4.204 27 O -0.219 6.219 28 H 0.099 0.901 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.155 0.845 37 H 0.145 0.855 38 H 0.158 0.842 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.417 6.484 0.836 9.887 hybrid contribution 1.210 0.410 1.092 1.681 sum 8.627 6.893 1.928 11.210 Atomic orbital electron populations 1.22669 0.83073 1.02137 0.98723 1.88237 1.17573 1.26164 1.95011 1.22895 0.94237 0.85625 0.99838 1.21416 0.93090 0.97274 0.88677 1.53966 1.66305 1.15139 1.28766 1.19281 1.37303 0.77824 1.02686 0.85965 1.25720 0.95144 0.94872 0.98373 1.69815 1.37723 1.06966 1.30451 0.87026 0.80962 0.80192 0.82175 1.19314 1.21229 1.17831 1.11901 0.74220 0.73208 0.77802 1.93357 1.86372 1.67471 1.49240 1.93332 1.71566 1.47010 1.87368 1.32377 1.29859 1.04319 1.09348 1.20584 0.94942 0.93542 0.93118 1.20295 0.90982 1.02738 1.04244 1.19663 0.83311 0.94837 0.93608 1.20849 0.95361 1.00466 1.03556 1.20085 0.89556 0.96249 0.93403 1.21840 0.90642 1.01529 1.00109 1.23403 0.93804 0.83773 0.97202 0.89563 1.21868 0.95039 1.03023 1.00503 1.86796 1.15436 1.35187 1.84511 0.90067 0.95324 0.94757 0.93593 0.92518 0.90119 0.91317 0.90910 0.84455 0.85493 0.84241 0.88847 0.89198 0.91438 0.91465 0.90223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.35 -7.24 9.94 -35.23 -0.35 -7.59 16 3 C 0.05 0.99 6.28 37.16 0.23 1.23 16 4 C 0.12 2.45 4.74 -4.05 -0.02 2.43 16 5 N -0.82 -18.72 2.46 -59.91 -0.15 -18.86 16 6 C -0.22 -5.54 8.76 -15.06 -0.13 -5.67 16 7 H 0.12 3.37 7.62 -52.49 -0.40 2.97 16 8 C 0.08 1.88 5.33 -17.43 -0.09 1.79 16 9 N -0.81 -20.98 13.97 55.49 0.78 -20.20 16 10 Si 0.87 18.99 25.04 -169.99 -4.26 14.73 16 11 H -0.27 -5.56 6.68 56.52 0.38 -5.18 16 12 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 13 H -0.25 -5.47 7.11 56.52 0.40 -5.07 16 14 S 2.53 57.73 5.58 -107.50 -0.60 57.13 16 15 O -0.97 -24.91 16.06 -57.17 -0.92 -25.83 16 16 O -1.00 -23.31 16.43 -57.17 -0.94 -24.24 16 17 C -0.68 -14.09 5.98 -39.52 -0.24 -14.33 16 18 C 0.00 -0.05 9.50 -39.68 -0.38 -0.43 16 19 C -0.16 -2.78 10.06 -39.30 -0.40 -3.17 16 20 C 0.13 2.28 7.04 -38.95 -0.27 2.00 16 21 C -0.20 -3.51 6.27 -104.10 -0.65 -4.17 16 22 C 0.03 0.52 9.52 -39.72 -0.38 0.14 16 23 C -0.10 -1.37 6.64 -26.52 -0.18 -1.54 16 24 C 0.07 0.89 4.25 -25.83 -0.11 0.78 16 25 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 26 C -0.15 -1.29 9.59 37.16 0.36 -0.93 16 27 O -0.30 -4.72 10.81 -20.15 -0.22 -4.94 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.07 8.03 -51.93 -0.42 0.66 16 33 H 0.08 1.38 7.74 -51.93 -0.40 0.98 16 34 H 0.07 1.41 3.09 -51.93 -0.16 1.25 16 35 H 0.28 6.68 8.31 -40.82 -0.34 6.34 16 36 H 0.14 2.25 7.72 -52.49 -0.41 1.84 16 37 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.14 2.71 7.54 -52.48 -0.40 2.32 16 39 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.09 1.05 7.93 -51.93 -0.41 0.63 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 365.48 15.07 5.51 5.51 Total: -1.00 -31.29 365.48 -8.27 -39.56 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -5.98 Total: 4.99 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: -1.14 Total: -20.27 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.63 Total: -39.07 kcal Atomic # 8 Polarization: -60.17 SS G_CDS: -2.43 Total: -62.60 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -4.26 Total: 14.73 kcal Atomic # 16 Polarization: 57.73 SS G_CDS: -0.60 Total: 57.13 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.29 -8.27 -39.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414457444.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.968 kcal (2) G-P(sol) polarization free energy of solvation -31.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds