Wall clock time and date at job start Sat Apr 11 2020 06:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99714 * 2 1 4 4 C 1.52996 * 109.47215 * 179.97438 * 3 2 1 5 5 N 1.46508 * 109.46635 * 65.00334 * 4 3 2 6 6 C 1.36932 * 120.00138 * 274.99962 * 5 4 3 7 7 H 1.08005 * 120.00000 * 146.19390 * 6 5 4 8 8 C 1.38809 * 119.99898 * 326.19804 * 6 5 4 9 9 N 1.31617 * 120.00365 * 336.37178 * 8 6 5 10 10 Si 1.86798 * 120.00061 * 156.37683 * 8 6 5 11 11 H 1.48498 * 109.47516 * 59.99732 * 10 8 6 12 12 H 1.48499 * 109.47253 * 179.97438 * 10 8 6 13 13 H 1.48508 * 109.47022 * 299.99843 * 10 8 6 14 14 S 1.65601 * 119.99806 * 94.99995 * 5 4 3 15 15 O 1.42097 * 106.40309 * 341.68655 * 14 5 4 16 16 O 1.42096 * 106.40411 * 208.76435 * 14 5 4 17 17 C 1.76201 * 107.21923 * 95.22620 * 14 5 4 18 18 C 1.38298 * 120.11413 * 270.02558 * 17 14 5 19 19 C 1.37929 * 120.34565 * 179.79540 * 18 17 14 20 20 C 1.39277 * 120.24187 * 359.97438 * 19 18 17 21 21 C 1.38882 * 118.88332 * 0.37047 * 20 19 18 22 22 C 1.37744 * 120.77970 * 359.44010 * 21 20 19 23 23 C 1.51639 * 107.04750 * 179.03297 * 21 20 19 24 24 C 1.54707 * 101.94625 * 344.86163 * 23 21 20 25 25 H 1.08998 * 110.90932 * 266.83445 * 24 23 21 26 26 C 1.53004 * 110.75074 * 143.54451 * 24 23 21 27 27 O 1.36139 * 129.89746 * 180.94357 * 20 19 18 28 28 H 1.08998 * 109.47220 * 299.99252 * 1 2 3 29 29 H 1.08991 * 109.47482 * 59.99743 * 1 2 3 30 30 H 1.09001 * 109.46703 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46910 * 60.00237 * 3 2 1 32 32 H 1.09000 * 109.47803 * 300.00544 * 3 2 1 33 33 H 1.09002 * 109.47589 * 305.00619 * 4 3 2 34 34 H 1.08995 * 109.47428 * 185.00214 * 4 3 2 35 35 H 0.97002 * 120.00316 * 180.02562 * 9 8 6 36 36 H 1.07999 * 119.82372 * 359.78243 * 18 17 14 37 37 H 1.08009 * 119.87721 * 180.02562 * 19 18 17 38 38 H 1.08001 * 120.00800 * 180.10014 * 22 21 20 39 39 H 1.09001 * 110.93343 * 103.02269 * 23 21 20 40 40 H 1.08999 * 110.93804 * 226.69924 * 23 21 20 41 41 H 1.08997 * 109.47220 * 305.19362 * 26 24 23 42 42 H 1.09000 * 109.46648 * 65.19426 * 26 24 23 43 43 H 1.08999 * 109.46752 * 185.19035 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5641 -1.2510 6 6 3.9998 -0.8000 -1.3679 7 1 3.7819 -1.2644 -2.3183 8 6 4.3033 -1.5860 -0.2647 9 7 5.0017 -1.0819 0.7305 10 14 3.7207 -3.3593 -0.1927 11 1 4.2891 -4.1141 -1.3382 12 1 4.1725 -3.9775 1.0797 13 1 2.2378 -3.3964 -0.2624 14 16 4.4471 1.5124 -2.5245 15 8 3.9204 2.8085 -2.2758 16 8 4.1634 0.7712 -3.7031 17 6 6.2007 1.6637 -2.4421 18 6 6.7750 2.6982 -1.7260 19 6 8.1472 2.8187 -1.6549 20 6 8.9668 1.8985 -2.3038 21 6 8.3784 0.8682 -3.0257 22 6 7.0079 0.7474 -3.0923 23 6 9.5030 0.0518 -3.6325 24 6 10.7132 1.0013 -3.4672 25 1 10.8554 1.6094 -4.3606 26 6 11.9826 0.2105 -3.1445 27 8 10.3251 1.8196 -2.3505 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6885 1.8464 0.8901 32 1 1.6885 1.8465 -0.8899 33 1 3.8508 0.5685 0.8426 34 1 3.9783 2.1766 0.0902 35 1 5.2142 -1.6312 1.5012 36 1 6.1457 3.4154 -1.2201 37 1 8.5876 3.6293 -1.0931 38 1 6.5635 -0.0596 -3.6560 39 1 9.6556 -0.8738 -3.0774 40 1 9.3106 -0.1542 -4.6854 41 1 11.8090 -0.4134 -2.2678 42 1 12.2431 -0.4209 -3.9940 43 1 12.8001 0.9024 -2.9420 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414457446.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:33 Heat of formation + Delta-G solvation = -134.219302 kcal Electronic energy + Delta-G solvation = -28763.304872 eV Core-core repulsion = 24707.890447 eV Total energy + Delta-G solvation = -4055.414424 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -42.19652 -38.92784 -38.51977 -37.70538 -37.06258 -36.30985 -34.21579 -33.53279 -32.12085 -31.20178 -30.46021 -27.59886 -27.24173 -26.06870 -23.96653 -23.29812 -22.85343 -22.68935 -20.24218 -19.09202 -18.60641 -18.39693 -18.04815 -17.67447 -16.93232 -16.90229 -16.59139 -16.15864 -16.02042 -15.65636 -15.27566 -15.10174 -14.94041 -14.50291 -14.19076 -14.03303 -13.78769 -13.63977 -13.54756 -13.48033 -13.39482 -13.04161 -12.98631 -12.69242 -12.64871 -12.56696 -12.37323 -12.31307 -12.19551 -11.97021 -11.90302 -11.76917 -11.70504 -11.46368 -10.97201 -10.36144 -9.97368 -9.65895 -9.38065 -8.33429 -5.90443 -0.14482 0.11922 0.27063 1.52049 1.57356 1.67123 2.08254 2.30963 2.44847 2.78488 3.00392 3.17406 3.29827 3.34238 3.50507 3.78809 3.88568 3.98658 4.12607 4.20570 4.32014 4.37503 4.41019 4.52075 4.58883 4.62121 4.64025 4.68267 4.69415 4.76600 4.81348 4.88644 4.92229 4.97277 5.09781 5.20025 5.22456 5.27180 5.33995 5.39315 5.53836 5.75858 6.10246 6.45605 6.56649 6.91103 7.36587 8.62123 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014242 B = 0.004264 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.523601 B = 6565.237458 C = 7600.653348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.390 6.390 3 C 0.056 3.944 4 C 0.117 3.883 5 N -0.799 5.799 6 C -0.239 4.239 7 H 0.093 0.907 8 C 0.023 3.977 9 N -0.840 5.840 10 Si 0.974 3.026 11 H -0.268 1.268 12 H -0.275 1.275 13 H -0.265 1.265 14 S 2.531 3.469 15 O -1.024 7.024 16 O -1.017 7.017 17 C -0.694 4.694 18 C -0.010 4.010 19 C -0.164 4.164 20 C 0.128 3.872 21 C -0.208 4.208 22 C 0.006 3.994 23 C -0.103 4.103 24 C 0.070 3.930 25 H 0.103 0.897 26 C -0.143 4.143 27 O -0.312 6.312 28 H 0.054 0.946 29 H 0.037 0.963 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.032 0.968 33 H 0.106 0.894 34 H 0.079 0.921 35 H 0.280 0.720 36 H 0.146 0.854 37 H 0.154 0.846 38 H 0.126 0.874 39 H 0.098 0.902 40 H 0.111 0.889 41 H 0.060 0.940 42 H 0.106 0.894 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.775 0.748 -0.963 6.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.308 6.308 3 C -0.023 4.023 4 C -0.010 4.010 5 N -0.621 5.621 6 C -0.389 4.389 7 H 0.110 0.890 8 C -0.189 4.189 9 N -0.479 5.479 10 Si 0.797 3.203 11 H -0.192 1.192 12 H -0.200 1.200 13 H -0.190 1.190 14 S 2.636 3.364 15 O -1.014 7.014 16 O -1.008 7.008 17 C -0.775 4.775 18 C -0.030 4.030 19 C -0.183 4.183 20 C 0.082 3.918 21 C -0.209 4.209 22 C -0.013 4.013 23 C -0.139 4.139 24 C 0.015 3.985 25 H 0.121 0.879 26 C -0.200 4.200 27 O -0.226 6.226 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.124 0.876 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.164 0.836 37 H 0.172 0.828 38 H 0.144 0.856 39 H 0.116 0.884 40 H 0.129 0.871 41 H 0.079 0.921 42 H 0.124 0.876 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.717 1.322 -1.446 6.997 hybrid contribution 0.079 -0.442 0.162 0.477 sum 6.796 0.881 -1.284 6.972 Atomic orbital electron populations 1.22883 0.81255 1.03063 1.00238 1.88099 1.19809 1.27655 1.95276 1.22968 0.94576 0.84829 0.99896 1.21567 0.91930 0.97982 0.89526 1.53675 1.65417 1.13856 1.29202 1.19626 1.40066 0.80180 0.98989 0.88985 1.26210 0.93561 1.03209 0.95942 1.69982 1.30376 1.39048 1.08502 0.85281 0.79640 0.77389 0.77989 1.19240 1.19983 1.19002 1.11311 0.74972 0.73135 0.76975 1.93265 1.79493 1.42497 1.86104 1.93279 1.84895 1.72363 1.50252 1.31934 1.30555 1.04533 1.10519 1.20730 0.94473 0.94627 0.93128 1.20565 0.92033 1.00602 1.05134 1.19844 0.83654 0.93664 0.94629 1.21204 0.94972 0.99237 1.05528 1.20035 0.91908 0.95645 0.93717 1.22001 0.90040 0.98536 1.03366 1.23779 0.95934 0.90791 0.87996 0.87886 1.21914 0.94205 0.99963 1.03875 1.86820 1.16866 1.69526 1.49400 0.92795 0.94419 0.89311 0.90654 0.94925 0.87638 0.90260 0.91042 0.83646 0.82803 0.85622 0.88373 0.87088 0.92138 0.87563 0.90513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 11.01 113.37 1.25 1.91 16 2 O -0.39 -15.81 9.94 -148.98 -1.48 -17.29 16 3 C 0.06 2.19 6.28 71.98 0.45 2.64 16 4 C 0.12 5.12 5.43 86.38 0.47 5.59 16 5 N -0.80 -38.96 2.84 -343.45 -0.98 -39.94 16 6 C -0.24 -12.07 8.44 84.03 0.71 -11.36 16 7 H 0.09 4.80 7.46 -2.91 -0.02 4.78 16 8 C 0.02 1.10 4.98 84.86 0.42 1.52 16 9 N -0.84 -40.70 11.29 21.65 0.24 -40.46 16 10 Si 0.97 38.75 29.61 68.60 2.03 40.78 16 11 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 12 H -0.28 -10.46 7.11 99.48 0.71 -9.76 16 13 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 14 S 2.53 124.62 5.61 -56.49 -0.32 124.31 16 15 O -1.02 -51.31 16.08 -128.00 -2.06 -53.37 16 16 O -1.02 -55.17 16.29 -128.00 -2.09 -57.26 16 17 C -0.69 -31.26 5.98 22.31 0.13 -31.13 16 18 C -0.01 -0.42 9.50 22.21 0.21 -0.21 16 19 C -0.16 -5.86 10.06 22.45 0.23 -5.64 16 20 C 0.13 4.57 7.03 22.67 0.16 4.73 16 21 C -0.21 -7.57 6.27 -19.53 -0.12 -7.70 16 22 C 0.01 0.27 9.51 22.18 0.21 0.48 16 23 C -0.10 -2.65 6.65 30.73 0.20 -2.45 16 24 C 0.07 1.56 4.26 31.18 0.13 1.70 16 25 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 26 C -0.14 -2.23 9.60 71.98 0.69 -1.54 16 27 O -0.31 -9.55 10.81 -95.13 -1.03 -10.58 16 28 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 32 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.11 4.90 5.32 -2.39 -0.01 4.88 16 34 H 0.08 3.24 7.46 -2.39 -0.02 3.22 16 35 H 0.28 12.68 8.31 -92.71 -0.77 11.90 16 36 H 0.15 5.40 7.62 -2.91 -0.02 5.38 16 37 H 0.15 4.45 8.06 -2.91 -0.02 4.43 16 38 H 0.13 5.40 7.63 -2.91 -0.02 5.38 16 39 H 0.10 2.40 7.90 -2.39 -0.02 2.38 16 40 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.06 1.06 8.11 -2.39 -0.02 1.04 16 42 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -66.81 369.96 0.49 -66.32 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: 1.02 Total: 28.93 kcal Atomic # 6 Polarization: -46.59 SS G_CDS: 5.15 Total: -41.45 kcal Atomic # 7 Polarization: -79.67 SS G_CDS: -0.73 Total: -80.40 kcal Atomic # 8 Polarization: -131.84 SS G_CDS: -6.65 Total: -138.50 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Atomic # 16 Polarization: 124.62 SS G_CDS: -0.32 Total: 124.31 kcal Total: -66.81 0.49 -66.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414457446.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.900 kcal (2) G-P(sol) polarization free energy of solvation -66.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds