Wall clock time and date at job start Sat Apr 11 2020 06:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35900 * 117.00265 * 2 1 4 4 C 1.38726 * 120.05752 * 179.97438 * 3 2 1 5 5 C 1.38149 * 119.94477 * 180.02562 * 4 3 2 6 6 C 1.38266 * 120.05411 * 0.28574 * 5 4 3 7 7 S 1.76196 * 119.94521 * 179.70060 * 6 5 4 8 8 O 1.42096 * 104.27977 * 206.06520 * 7 6 5 9 9 O 1.42103 * 104.27348 * 333.92447 * 7 6 5 10 10 C 1.81400 * 104.45021 * 89.99206 * 7 6 5 11 11 C 1.52999 * 109.47223 * 180.02562 * 10 7 6 12 12 H 1.09006 * 109.47281 * 304.99996 * 11 10 7 13 13 C 1.52994 * 109.47162 * 65.00251 * 11 10 7 14 14 C 1.50703 * 109.47154 * 185.00404 * 11 10 7 15 15 O 1.21277 * 119.99896 * 359.97438 * 14 11 10 16 16 N 1.34776 * 119.99623 * 180.02562 * 14 11 10 17 17 C 1.46508 * 119.99452 * 180.02562 * 16 14 11 18 18 C 1.50707 * 109.46703 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00102 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99627 * 179.97438 * 18 17 16 21 21 N 1.31508 * 120.00047 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99560 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47478 * 60.00110 * 22 20 18 24 24 H 1.48509 * 109.46900 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47429 * 299.99874 * 22 20 18 26 26 C 1.38264 * 120.10762 * 359.44038 * 6 5 4 27 27 C 1.38144 * 120.05928 * 0.55731 * 26 6 5 28 28 H 1.08997 * 109.47423 * 299.99641 * 1 2 3 29 29 H 1.08995 * 109.47128 * 59.99997 * 1 2 3 30 30 H 1.09000 * 109.47439 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.02799 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.97030 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.47519 * 300.00201 * 10 7 6 34 34 H 1.09002 * 109.47253 * 60.00568 * 10 7 6 35 35 H 1.09000 * 109.47623 * 180.02562 * 13 11 10 36 36 H 1.08999 * 109.46973 * 300.00047 * 13 11 10 37 37 H 1.08998 * 109.47298 * 60.00092 * 13 11 10 38 38 H 0.96999 * 120.00840 * 359.97438 * 16 14 11 39 39 H 1.08998 * 109.46945 * 299.99326 * 17 16 14 40 40 H 1.08995 * 109.47344 * 59.99734 * 17 16 14 41 41 H 0.97001 * 119.99835 * 180.02562 * 21 20 18 42 42 H 1.08007 * 119.96975 * 180.26053 * 26 6 5 43 43 H 1.08006 * 120.02939 * 179.70744 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5169 0.0011 6 6 3.3019 3.6757 0.0070 7 16 4.1018 5.2457 0.0157 8 8 3.1586 6.1163 0.6251 9 8 5.3629 4.9930 0.6201 10 6 4.3081 5.6583 -1.7387 11 6 5.0006 7.0167 -1.8651 12 1 4.4384 7.7646 -1.3059 13 6 6.4201 6.9198 -1.3026 14 6 5.0618 7.4161 -3.3170 15 8 4.5976 6.6860 -4.1668 16 7 5.6332 8.5843 -3.6709 17 6 5.6922 8.9729 -5.0823 18 6 6.3745 10.3109 -5.2068 19 1 6.7283 10.8209 -4.3230 20 6 6.5469 10.8838 -6.4490 21 7 6.1155 10.2629 -7.5250 22 14 7.3919 12.5426 -6.6032 23 1 8.7697 12.4490 -6.0570 24 1 7.4518 12.9364 -8.0339 25 1 6.6256 13.5613 -5.8415 26 6 1.9211 3.6047 0.0008 27 6 1.2915 2.3750 0.0002 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 4.0208 0.3799 0.0005 32 1 5.1346 2.5749 0.0019 33 1 4.9165 4.8942 -2.2226 34 1 3.3306 5.7024 -2.2189 35 1 6.9134 7.8876 -1.3923 36 1 6.3758 6.6308 -0.2526 37 1 6.9823 6.1719 -1.8618 38 1 6.0048 9.1681 -2.9912 39 1 6.2537 8.2248 -5.6419 40 1 4.6808 9.0425 -5.4825 41 1 6.2371 10.6659 -8.3990 42 1 1.3342 4.5114 0.0012 43 1 0.2129 2.3201 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427635113.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:38 Heat of formation + Delta-G solvation = -126.075036 kcal Electronic energy + Delta-G solvation = -26739.230657 eV Core-core repulsion = 22684.169395 eV Total energy + Delta-G solvation = -4055.061263 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.62537 -39.25217 -37.93618 -37.23398 -36.08468 -34.62804 -34.23208 -32.33097 -31.66448 -30.88163 -28.08999 -27.83107 -27.06913 -23.98921 -23.40506 -22.93948 -21.95574 -19.59078 -19.17268 -18.81433 -18.02151 -17.08483 -16.84534 -16.42190 -16.28196 -15.82960 -15.44867 -15.22050 -15.15309 -14.95874 -14.46711 -14.27762 -13.97780 -13.73703 -13.61056 -13.33737 -13.07538 -12.97962 -12.60911 -12.52192 -12.09794 -12.02913 -11.92125 -11.82398 -11.77490 -11.51685 -11.42438 -11.27832 -11.12418 -11.02304 -10.88534 -10.70240 -10.34023 -9.53741 -9.45018 -9.12602 -9.00648 -8.77063 -7.95993 -6.19593 -4.26829 -0.10230 0.54284 0.85984 2.63166 2.75758 3.03441 3.22340 3.24227 3.29009 3.30360 3.66894 3.97252 4.03021 4.24694 4.32314 4.34107 4.36652 4.55953 4.62626 4.69422 4.81283 4.93470 4.97426 4.99398 5.09990 5.16647 5.29722 5.45949 5.47486 5.52233 5.56535 5.71052 5.73351 5.75882 5.92701 6.17464 6.18401 6.77093 7.24407 7.34788 7.46298 7.61680 7.92895 8.54364 8.72067 9.00013 9.39715 10.90492 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022942 B = 0.002111 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.150091 B =13260.459254 C =13887.890002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.312 6.312 3 C 0.178 3.822 4 C -0.173 4.173 5 C 0.017 3.983 6 C -0.696 4.696 7 S 2.499 3.501 8 O -0.939 6.939 9 O -0.935 6.935 10 C -0.580 4.580 11 C -0.105 4.105 12 H 0.108 0.892 13 C -0.176 4.176 14 C 0.511 3.489 15 O -0.552 6.552 16 N -0.708 5.708 17 C 0.249 3.751 18 C -0.545 4.545 19 H 0.063 0.937 20 C 0.064 3.936 21 N -0.886 5.886 22 Si 0.905 3.095 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.019 3.981 27 C -0.230 4.230 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.104 0.896 31 H 0.141 0.859 32 H 0.151 0.849 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.392 0.608 39 H 0.028 0.972 40 H 0.028 0.972 41 H 0.267 0.733 42 H 0.146 0.854 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.883 -18.130 17.743 26.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.225 6.225 3 C 0.132 3.868 4 C -0.192 4.192 5 C -0.002 4.002 6 C -0.783 4.783 7 S 2.680 3.320 8 O -0.936 6.936 9 O -0.932 6.932 10 C -0.710 4.710 11 C -0.127 4.127 12 H 0.126 0.874 13 C -0.234 4.234 14 C 0.294 3.706 15 O -0.431 6.431 16 N -0.356 5.356 17 C 0.129 3.871 18 C -0.583 4.583 19 H 0.082 0.918 20 C -0.140 4.140 21 N -0.523 5.523 22 Si 0.732 3.268 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.200 1.200 26 C 0.000 4.000 27 C -0.250 4.250 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.122 0.878 31 H 0.159 0.841 32 H 0.169 0.831 33 H 0.161 0.839 34 H 0.162 0.838 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.225 0.775 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.076 0.924 42 H 0.164 0.836 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.923 -18.372 17.623 26.977 hybrid contribution -0.080 0.644 -0.612 0.892 sum -9.003 -17.728 17.012 26.167 Atomic orbital electron populations 1.23186 0.77611 1.04525 1.01921 1.86112 1.22131 1.26787 1.87422 1.19352 0.92637 0.84294 0.90559 1.20570 0.91439 0.99063 1.08128 1.20815 1.00358 0.90161 0.88870 1.30477 1.04798 1.20754 1.22247 1.05361 0.74621 0.74164 0.77806 1.93564 1.62561 1.64203 1.73302 1.93551 1.41551 1.84504 1.73594 1.30141 1.11658 1.06142 1.23065 1.21083 0.98661 0.94874 0.98128 0.87442 1.22260 0.94037 1.04619 1.02469 1.19959 0.79146 0.82360 0.89145 1.90654 1.48080 1.52429 1.51959 1.46453 1.57509 1.19409 1.12190 1.19145 0.97678 0.95265 0.75052 1.21186 1.39862 1.03898 0.93391 0.91844 1.24955 0.95429 0.98169 0.95469 1.69959 1.45275 1.38643 0.98398 0.86455 0.79915 0.83222 0.77194 1.20027 1.21081 1.20036 1.20785 0.92420 0.98386 0.88439 1.21368 1.00636 0.92223 1.10741 0.92151 0.92053 0.87753 0.84088 0.83145 0.83886 0.83821 0.90284 0.89979 0.90712 0.77459 0.95405 0.95435 0.92361 0.83641 0.84402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.31 -2.58 10.50 -19.42 -0.20 -2.78 16 3 C 0.18 1.64 6.69 -39.22 -0.26 1.38 16 4 C -0.17 -1.57 9.99 -39.43 -0.39 -1.96 16 5 C 0.02 0.16 9.46 -39.60 -0.37 -0.22 16 6 C -0.70 -7.16 5.66 -39.56 -0.22 -7.38 16 7 S 2.50 27.69 4.81 -107.50 -0.52 27.17 16 8 O -0.94 -12.66 17.13 -57.54 -0.99 -13.64 16 9 O -0.93 -11.83 14.87 -57.54 -0.86 -12.68 16 10 C -0.58 -6.71 4.77 37.16 0.18 -6.54 16 11 C -0.10 -1.43 2.72 -91.77 -0.25 -1.68 16 12 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 13 C -0.18 -2.13 8.78 37.15 0.33 -1.80 16 14 C 0.51 9.72 7.15 -10.98 -0.08 9.64 16 15 O -0.55 -12.55 15.92 5.56 0.09 -12.46 16 16 N -0.71 -14.42 5.44 -61.47 -0.33 -14.76 16 17 C 0.25 6.47 5.43 -5.19 -0.03 6.44 16 18 C -0.55 -14.55 9.28 -34.44 -0.32 -14.87 16 19 H 0.06 1.57 7.60 -52.49 -0.40 1.18 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 21 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 22 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 24 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 C 0.02 0.18 9.46 -39.61 -0.37 -0.20 16 27 C -0.23 -1.98 9.04 -39.43 -0.36 -2.33 16 28 H 0.06 0.21 7.66 -51.93 -0.40 -0.18 16 29 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 30 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.15 1.16 7.57 -52.49 -0.40 0.76 16 33 H 0.14 1.51 8.14 -51.92 -0.42 1.08 16 34 H 0.14 1.59 7.96 -51.92 -0.41 1.17 16 35 H 0.08 0.88 7.56 -51.93 -0.39 0.48 16 36 H 0.08 0.91 5.61 -51.93 -0.29 0.62 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.39 6.80 7.74 -40.82 -0.32 6.48 16 39 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.15 1.18 7.57 -52.48 -0.40 0.79 16 43 H 0.14 0.81 6.30 -52.48 -0.33 0.48 16 LS Contribution 374.94 15.07 5.65 5.65 Total: -1.00 -36.60 374.94 -8.53 -45.14 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -5.83 Total: 4.56 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -1.26 Total: -16.77 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.40 Total: -39.80 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -1.96 Total: -41.57 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 27.69 SS G_CDS: -0.52 Total: 27.17 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.60 -8.53 -45.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427635113.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.939 kcal (2) G-P(sol) polarization free energy of solvation -36.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds