Wall clock time and date at job start Sat Apr 11 2020 06:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35900 * 117.00265 * 2 1 4 4 C 1.38726 * 120.05752 * 179.97438 * 3 2 1 5 5 C 1.38149 * 119.94477 * 180.02562 * 4 3 2 6 6 C 1.38266 * 120.05411 * 0.28574 * 5 4 3 7 7 S 1.76196 * 119.94521 * 179.70060 * 6 5 4 8 8 O 1.42096 * 104.27977 * 206.06520 * 7 6 5 9 9 O 1.42103 * 104.27348 * 333.92447 * 7 6 5 10 10 C 1.81400 * 104.45021 * 89.99206 * 7 6 5 11 11 C 1.52999 * 109.47223 * 180.02562 * 10 7 6 12 12 H 1.09006 * 109.47281 * 304.99996 * 11 10 7 13 13 C 1.52994 * 109.47162 * 65.00251 * 11 10 7 14 14 C 1.50703 * 109.47154 * 185.00404 * 11 10 7 15 15 O 1.21277 * 119.99896 * 359.97438 * 14 11 10 16 16 N 1.34776 * 119.99623 * 180.02562 * 14 11 10 17 17 C 1.46508 * 119.99452 * 180.02562 * 16 14 11 18 18 C 1.50707 * 109.46703 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00102 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99627 * 179.97438 * 18 17 16 21 21 N 1.31508 * 120.00047 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99560 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47478 * 60.00110 * 22 20 18 24 24 H 1.48509 * 109.46900 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47429 * 299.99874 * 22 20 18 26 26 C 1.38264 * 120.10762 * 359.44038 * 6 5 4 27 27 C 1.38144 * 120.05928 * 0.55731 * 26 6 5 28 28 H 1.08997 * 109.47423 * 299.99641 * 1 2 3 29 29 H 1.08995 * 109.47128 * 59.99997 * 1 2 3 30 30 H 1.09000 * 109.47439 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.02799 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.97030 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.47519 * 300.00201 * 10 7 6 34 34 H 1.09002 * 109.47253 * 60.00568 * 10 7 6 35 35 H 1.09000 * 109.47623 * 180.02562 * 13 11 10 36 36 H 1.08999 * 109.46973 * 300.00047 * 13 11 10 37 37 H 1.08998 * 109.47298 * 60.00092 * 13 11 10 38 38 H 0.96999 * 120.00840 * 359.97438 * 16 14 11 39 39 H 1.08998 * 109.46945 * 299.99326 * 17 16 14 40 40 H 1.08995 * 109.47344 * 59.99734 * 17 16 14 41 41 H 0.97001 * 119.99835 * 180.02562 * 21 20 18 42 42 H 1.08007 * 119.96975 * 180.26053 * 26 6 5 43 43 H 1.08006 * 120.02939 * 179.70744 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5169 0.0011 6 6 3.3019 3.6757 0.0070 7 16 4.1018 5.2457 0.0157 8 8 3.1586 6.1163 0.6251 9 8 5.3629 4.9930 0.6201 10 6 4.3081 5.6583 -1.7387 11 6 5.0006 7.0167 -1.8651 12 1 4.4384 7.7646 -1.3059 13 6 6.4201 6.9198 -1.3026 14 6 5.0618 7.4161 -3.3170 15 8 4.5976 6.6860 -4.1668 16 7 5.6332 8.5843 -3.6709 17 6 5.6922 8.9729 -5.0823 18 6 6.3745 10.3109 -5.2068 19 1 6.7283 10.8209 -4.3230 20 6 6.5469 10.8838 -6.4490 21 7 6.1155 10.2629 -7.5250 22 14 7.3919 12.5426 -6.6032 23 1 8.7697 12.4490 -6.0570 24 1 7.4518 12.9364 -8.0339 25 1 6.6256 13.5613 -5.8415 26 6 1.9211 3.6047 0.0008 27 6 1.2915 2.3750 0.0002 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 4.0208 0.3799 0.0005 32 1 5.1346 2.5749 0.0019 33 1 4.9165 4.8942 -2.2226 34 1 3.3306 5.7024 -2.2189 35 1 6.9134 7.8876 -1.3923 36 1 6.3758 6.6308 -0.2526 37 1 6.9823 6.1719 -1.8618 38 1 6.0048 9.1681 -2.9912 39 1 6.2537 8.2248 -5.6419 40 1 4.6808 9.0425 -5.4825 41 1 6.2371 10.6659 -8.3990 42 1 1.3342 4.5114 0.0012 43 1 0.2129 2.3201 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427635113.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:37 Heat of formation + Delta-G solvation = -153.609079 kcal Electronic energy + Delta-G solvation = -26740.424623 eV Core-core repulsion = 22684.169395 eV Total energy + Delta-G solvation = -4056.255228 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.23396 -40.81991 -38.55741 -38.19930 -37.06404 -36.24938 -35.71860 -34.30006 -32.31688 -31.54602 -29.61581 -28.51981 -28.23687 -25.60039 -24.13966 -23.74578 -23.46699 -21.13939 -20.03896 -19.54160 -19.12113 -18.37707 -17.81191 -17.53351 -17.17947 -16.82765 -16.79550 -16.57016 -16.24814 -16.14414 -15.81153 -15.12603 -14.88462 -14.74148 -14.62654 -14.37630 -14.12102 -14.01433 -13.89570 -13.82518 -13.56415 -13.12279 -12.96932 -12.92093 -12.78629 -12.68680 -12.55328 -12.36339 -12.29830 -12.21953 -12.05833 -11.98645 -11.69519 -11.50119 -10.79202 -10.70233 -10.21211 -9.85333 -9.68765 -8.28878 -6.45175 -0.99675 -0.17964 0.18713 1.44163 1.47771 1.55841 1.68385 1.86334 2.16671 2.26605 2.34781 2.54298 2.87868 3.06109 3.12485 3.28263 3.60075 3.70186 3.79100 3.81512 4.10628 4.13680 4.22226 4.32783 4.33844 4.41526 4.48881 4.63349 4.68280 4.76522 4.81426 4.89048 4.94422 5.02091 5.10561 5.11745 5.23294 5.24463 5.47424 5.53151 5.67162 5.84598 6.19662 6.65074 6.85774 7.23138 7.43388 8.82854 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022942 B = 0.002111 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.150091 B =13260.459254 C =13887.890002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.325 6.325 3 C 0.172 3.828 4 C -0.183 4.183 5 C 0.007 3.993 6 C -0.706 4.706 7 S 2.529 3.471 8 O -0.962 6.962 9 O -0.949 6.949 10 C -0.586 4.586 11 C -0.099 4.099 12 H 0.132 0.868 13 C -0.180 4.180 14 C 0.509 3.491 15 O -0.593 6.593 16 N -0.705 5.705 17 C 0.265 3.735 18 C -0.557 4.557 19 H 0.084 0.916 20 C 0.004 3.996 21 N -0.930 5.930 22 Si 0.984 3.016 23 H -0.262 1.262 24 H -0.286 1.286 25 H -0.263 1.263 26 C 0.004 3.996 27 C -0.232 4.232 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.124 0.876 31 H 0.156 0.844 32 H 0.164 0.836 33 H 0.151 0.849 34 H 0.147 0.853 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.410 0.590 39 H -0.010 1.010 40 H -0.010 1.010 41 H 0.269 0.731 42 H 0.156 0.844 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.796 -17.897 19.567 27.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.237 6.237 3 C 0.125 3.875 4 C -0.203 4.203 5 C -0.011 4.011 6 C -0.795 4.795 7 S 2.712 3.288 8 O -0.959 6.959 9 O -0.946 6.946 10 C -0.715 4.715 11 C -0.122 4.122 12 H 0.150 0.850 13 C -0.237 4.237 14 C 0.295 3.705 15 O -0.475 6.475 16 N -0.354 5.354 17 C 0.142 3.858 18 C -0.595 4.595 19 H 0.102 0.898 20 C -0.196 4.196 21 N -0.568 5.568 22 Si 0.807 3.193 23 H -0.187 1.187 24 H -0.212 1.212 25 H -0.187 1.187 26 C -0.015 4.015 27 C -0.252 4.252 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.142 0.858 31 H 0.174 0.826 32 H 0.182 0.818 33 H 0.169 0.831 34 H 0.165 0.835 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.246 0.754 39 H 0.008 0.992 40 H 0.008 0.992 41 H 0.077 0.923 42 H 0.174 0.826 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -8.826 -18.123 19.499 28.045 hybrid contribution -0.213 0.401 -1.172 1.257 sum -9.039 -17.722 18.328 27.049 Atomic orbital electron populations 1.23497 0.75736 1.06207 1.02820 1.86103 1.24132 1.26387 1.87117 1.19559 0.92956 0.84908 0.90122 1.20839 0.91945 0.99536 1.07948 1.21058 1.01171 0.90134 0.88787 1.30284 1.05252 1.20107 1.23865 1.04338 0.73821 0.73943 0.76718 1.93529 1.63170 1.65494 1.73710 1.93523 1.42496 1.84856 1.73752 1.30227 1.11869 1.05313 1.24119 1.21117 1.00614 0.96616 0.93818 0.84982 1.22346 0.92821 1.05390 1.03128 1.20894 0.77287 0.81035 0.91331 1.90631 1.49430 1.53427 1.53966 1.46195 1.58305 1.20574 1.10345 1.18582 0.94824 0.94622 0.77736 1.21600 1.39558 1.04006 0.94343 0.89750 1.26049 0.95998 1.02522 0.95021 1.70122 1.46801 1.40808 0.99105 0.85222 0.79109 0.77840 0.77137 1.18663 1.21184 1.18725 1.21051 0.92405 0.99387 0.88622 1.21653 1.02002 0.91608 1.09909 0.91073 0.91282 0.85832 0.82617 0.81834 0.83085 0.83510 0.89207 0.88503 0.90836 0.75429 0.99154 0.99224 0.92267 0.82623 0.81957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.19 16 2 O -0.32 -4.87 10.50 -92.42 -0.97 -5.84 16 3 C 0.17 2.93 6.69 22.50 0.15 3.08 16 4 C -0.18 -3.13 9.99 22.37 0.22 -2.91 16 5 C 0.01 0.13 9.46 22.26 0.21 0.34 16 6 C -0.71 -13.83 5.66 22.28 0.13 -13.70 16 7 S 2.53 53.02 4.81 -56.49 -0.27 52.75 16 8 O -0.96 -24.73 17.13 -127.65 -2.19 -26.92 16 9 O -0.95 -22.60 14.87 -127.65 -1.90 -24.50 16 10 C -0.59 -13.10 4.77 71.98 0.34 -12.76 16 11 C -0.10 -2.59 2.72 -11.54 -0.03 -2.62 16 12 H 0.13 2.81 8.14 -2.38 -0.02 2.79 16 13 C -0.18 -4.02 8.78 71.98 0.63 -3.39 16 14 C 0.51 19.48 7.15 87.66 0.63 20.11 16 15 O -0.59 -27.79 15.92 -3.02 -0.05 -27.84 16 16 N -0.70 -28.95 5.44 -466.77 -2.54 -31.49 16 17 C 0.27 14.28 5.43 85.63 0.46 14.75 16 18 C -0.56 -29.86 9.28 25.60 0.24 -29.62 16 19 H 0.08 4.06 7.60 -2.91 -0.02 4.04 16 20 C 0.00 0.21 5.46 84.66 0.46 0.67 16 21 N -0.93 -55.50 13.29 21.45 0.28 -55.22 16 22 Si 0.98 41.91 29.54 68.60 2.03 43.93 16 23 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 24 H -0.29 -12.14 7.11 99.48 0.71 -11.44 16 25 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 26 C 0.00 0.08 9.46 22.25 0.21 0.29 16 27 C -0.23 -3.63 9.04 22.36 0.20 -3.43 16 28 H 0.07 0.35 7.66 -2.39 -0.02 0.33 16 29 H 0.07 0.38 7.66 -2.39 -0.02 0.36 16 30 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 32 H 0.16 2.34 7.57 -2.91 -0.02 2.32 16 33 H 0.15 3.10 8.14 -2.39 -0.02 3.08 16 34 H 0.15 3.19 7.96 -2.39 -0.02 3.17 16 35 H 0.09 1.80 7.56 -2.39 -0.02 1.78 16 36 H 0.10 1.93 5.61 -2.39 -0.01 1.92 16 37 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.41 13.79 7.74 -92.71 -0.72 13.07 16 39 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 40 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 41 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 42 H 0.16 2.37 7.57 -2.91 -0.02 2.34 16 43 H 0.16 1.56 6.30 -2.91 -0.02 1.55 16 Total: -1.00 -80.24 374.94 -0.31 -80.55 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.32 Total: 22.57 kcal Atomic # 6 Polarization: -32.97 SS G_CDS: 4.97 Total: -28.00 kcal Atomic # 7 Polarization: -84.45 SS G_CDS: -2.25 Total: -86.70 kcal Atomic # 8 Polarization: -79.99 SS G_CDS: -5.10 Total: -85.10 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.93 kcal Atomic # 16 Polarization: 53.02 SS G_CDS: -0.27 Total: 52.75 kcal Total: -80.24 -0.31 -80.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427635113.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.062 kcal (2) G-P(sol) polarization free energy of solvation -80.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds