Wall clock time and date at job start Sat Apr 11 2020 06:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.36122 * 126.31522 * 2 1 4 4 N 1.30080 * 110.04607 * 180.02562 * 3 2 1 5 5 C 1.35845 * 109.53778 * 359.97438 * 4 3 2 6 6 C 1.39724 * 133.51110 * 180.02562 * 5 4 3 7 7 C 1.37842 * 120.10534 * 179.97438 * 6 5 4 8 8 C 1.38322 * 120.73097 * 359.97438 * 7 6 5 9 9 C 1.39399 * 120.28201 * 359.81162 * 8 7 6 10 10 C 1.47529 * 120.24903 * 180.02562 * 9 8 7 11 11 O 1.21591 * 120.00073 * 239.82839 * 10 9 8 12 12 N 1.34778 * 119.99754 * 59.82799 * 10 9 8 13 13 C 1.46498 * 119.99813 * 185.29287 * 12 10 9 14 14 C 1.50701 * 109.47157 * 90.00300 * 13 12 10 15 15 H 1.08004 * 119.99578 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00349 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99773 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00419 * 179.97438 * 16 14 13 19 19 H 1.48509 * 109.46864 * 60.00373 * 18 16 14 20 20 H 1.48493 * 109.47168 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47056 * 300.00551 * 18 16 14 22 22 C 1.46496 * 120.00027 * 5.29760 * 12 10 9 23 23 C 1.53004 * 109.47455 * 89.45363 * 22 12 10 24 24 F 1.39889 * 109.47156 * 59.99634 * 23 22 12 25 25 F 1.39899 * 109.47096 * 180.02562 * 23 22 12 26 26 F 1.39903 * 109.46452 * 299.99889 * 23 22 12 27 27 C 1.37519 * 126.30913 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.47258 * 263.93826 * 1 2 3 29 29 H 1.09000 * 109.47014 * 23.93479 * 1 2 3 30 30 H 1.09002 * 109.47696 * 143.93577 * 1 2 3 31 31 H 1.08008 * 124.97415 * 0.04315 * 3 2 1 32 32 H 1.07995 * 119.94339 * 0.02562 * 6 5 4 33 33 H 1.08002 * 119.63279 * 179.97438 * 7 6 5 34 34 H 1.08000 * 119.85804 * 180.02562 * 8 7 6 35 35 H 1.09004 * 109.47188 * 210.00329 * 13 12 10 36 36 H 1.08994 * 109.47559 * 330.00274 * 13 12 10 37 37 H 0.97003 * 120.00511 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.47333 * 209.45122 * 22 12 10 39 39 H 1.09003 * 109.47452 * 329.44815 * 22 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2711 1.0968 0.0000 4 7 3.5198 0.7324 -0.0005 5 6 3.5972 -0.6238 -0.0004 6 6 4.6638 -1.5265 -0.0003 7 6 4.4212 -2.8834 0.0005 8 6 3.1263 -3.3699 0.0016 9 6 2.0449 -2.4903 0.0061 10 6 0.6642 -3.0100 0.0079 11 8 -0.0933 -2.7268 -0.9001 12 7 0.2424 -3.7988 1.0161 13 6 -1.0883 -4.4091 0.9612 14 6 -0.9973 -5.7524 0.2841 15 1 -0.0435 -6.1153 -0.0694 16 6 -2.1314 -6.5184 0.1170 17 7 -3.2927 -6.0766 0.5480 18 14 -2.0187 -8.1831 -0.7228 19 1 -1.1011 -9.0634 0.0443 20 1 -3.3675 -8.8018 -0.7784 21 1 -1.4980 -8.0074 -2.1023 22 6 1.1146 -4.0458 2.1669 23 6 0.8723 -2.9726 3.2302 24 9 -0.4644 -3.0159 3.6404 25 9 1.7057 -3.2082 4.3289 26 9 1.1547 -1.7120 2.6931 27 6 2.2792 -1.1082 -0.0005 28 1 -0.3633 -0.1085 1.0219 29 1 -0.3633 0.9393 -0.4169 30 1 -0.3634 -0.8307 -0.6050 31 1 1.9246 2.1198 0.0007 32 1 5.6798 -1.1604 0.0001 33 1 5.2513 -3.5743 0.0001 34 1 2.9525 -4.4358 0.0026 35 1 -1.4711 -4.5377 1.9736 36 1 -1.7613 -3.7631 0.3976 37 1 -4.0907 -6.6153 0.4302 38 1 0.8947 -5.0279 2.5854 39 1 2.1562 -4.0121 1.8474 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439258482.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:44 Heat of formation + Delta-G solvation = -101.052867 kcal Electronic energy + Delta-G solvation = -31498.082290 eV Core-core repulsion = 26799.098129 eV Total energy + Delta-G solvation = -4698.984160 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.109 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.85210 -47.40273 -47.30308 -42.17370 -39.44002 -37.06953 -35.49499 -34.04023 -32.87303 -30.76070 -29.54476 -29.27849 -27.34171 -26.70425 -24.19323 -23.34830 -22.83353 -22.18433 -21.06508 -19.14289 -18.31140 -18.26608 -17.67407 -17.30566 -16.76159 -16.48829 -16.03335 -15.90985 -15.58518 -15.24576 -14.63042 -14.45211 -14.26660 -14.20555 -13.79180 -13.73204 -13.59964 -13.52958 -13.48188 -13.32834 -13.08978 -12.63514 -12.46624 -12.23318 -12.04333 -11.88739 -11.71076 -11.42533 -11.33416 -11.08549 -10.72390 -10.36808 -10.22988 -10.22160 -9.87022 -9.31077 -8.57574 -8.36730 -8.24730 -7.97059 -6.19115 -4.25832 0.75321 1.52287 2.62096 2.69537 2.78221 3.20025 3.23772 3.29121 3.31037 3.38928 3.84146 4.07647 4.22116 4.24424 4.32692 4.35114 4.57515 4.80203 4.85008 4.99424 5.16143 5.17787 5.27213 5.34178 5.40578 5.44463 5.49973 5.68170 5.80616 6.10937 6.30106 6.39637 6.49107 6.71707 6.79507 7.10380 7.12456 7.24046 7.74476 7.83447 7.89598 8.01463 8.51673 8.78119 9.40110 10.89083 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.012935 B = 0.004599 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.193744 B = 6087.462272 C = 6538.431568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.479 5.479 3 C 0.258 3.742 4 N -0.498 5.498 5 C 0.039 3.961 6 C -0.050 4.050 7 C -0.133 4.133 8 C -0.080 4.080 9 C -0.112 4.112 10 C 0.560 3.440 11 O -0.517 6.517 12 N -0.585 5.585 13 C 0.242 3.758 14 C -0.537 4.537 15 H 0.060 0.940 16 C 0.066 3.934 17 N -0.890 5.890 18 Si 0.900 3.100 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.276 1.276 22 C 0.066 3.934 23 C 0.429 3.571 24 F -0.176 7.176 25 F -0.186 7.186 26 F -0.185 7.185 27 C 0.093 3.907 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.116 0.884 31 H 0.213 0.787 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.042 0.958 36 H 0.050 0.950 37 H 0.266 0.734 38 H 0.131 0.869 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.847 9.196 3.562 15.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.167 5.167 3 C -0.028 4.028 4 N -0.217 5.217 5 C -0.079 4.079 6 C -0.070 4.070 7 C -0.153 4.153 8 C -0.100 4.100 9 C -0.118 4.118 10 C 0.347 3.653 11 O -0.394 6.394 12 N -0.315 5.315 13 C 0.124 3.876 14 C -0.576 4.576 15 H 0.078 0.922 16 C -0.138 4.138 17 N -0.528 5.528 18 Si 0.727 3.273 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.062 4.062 23 C 0.373 3.627 24 F -0.158 7.158 25 F -0.168 7.168 26 F -0.167 7.167 27 C -0.019 4.019 28 H 0.091 0.909 29 H 0.105 0.895 30 H 0.134 0.866 31 H 0.229 0.771 32 H 0.149 0.851 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.149 0.851 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 11.710 9.854 3.100 15.615 hybrid contribution -0.918 -1.175 -0.135 1.497 sum 10.791 8.679 2.965 14.162 Atomic orbital electron populations 1.22551 0.75290 1.06386 1.04502 1.45173 1.07879 1.05182 1.58476 1.25339 0.85233 0.93435 0.98801 1.70478 1.18262 1.10560 1.22441 1.18988 0.91762 0.90360 1.06773 1.20349 0.97312 0.91402 0.97943 1.20781 0.96511 0.94724 1.03311 1.21091 0.91237 0.99290 0.98390 1.18990 0.94617 0.90103 1.08114 1.18179 0.86389 0.78307 0.82381 1.90692 1.55927 1.57507 1.35273 1.48162 1.19123 1.47591 1.16663 1.19562 0.76015 0.93301 0.98713 1.21319 0.94683 1.01998 1.39557 0.92182 1.24917 0.95021 0.98514 0.95310 1.69916 0.98847 1.38173 1.45857 0.86524 0.77286 0.83281 0.80160 1.20077 1.21091 1.20098 1.22795 0.98982 0.97600 0.86782 1.21598 0.74335 0.83744 0.83034 1.93212 1.34719 1.96482 1.91349 1.93156 1.72198 1.94417 1.57023 1.93177 1.93345 1.44319 1.85817 1.18488 0.91188 0.88039 1.04150 0.90884 0.89499 0.86608 0.77073 0.85148 0.84701 0.84397 0.93966 0.93167 0.92416 0.85106 0.86457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.73 10.51 59.84 0.63 1.36 16 2 N -0.48 -6.96 3.19 -122.94 -0.39 -7.35 16 3 C 0.26 3.22 12.50 -89.73 -1.12 2.09 16 4 N -0.50 -7.40 11.28 -12.04 -0.14 -7.54 16 5 C 0.04 0.60 7.22 -84.71 -0.61 -0.01 16 6 C -0.05 -0.64 10.09 -39.17 -0.40 -1.04 16 7 C -0.13 -1.52 9.99 -39.70 -0.40 -1.92 16 8 C -0.08 -1.10 7.63 -39.12 -0.30 -1.39 16 9 C -0.11 -1.87 3.96 -104.95 -0.42 -2.28 16 10 C 0.56 11.05 5.83 -12.47 -0.07 10.98 16 11 O -0.52 -11.91 13.87 5.29 0.07 -11.84 16 12 N -0.59 -11.43 2.37 -176.29 -0.42 -11.85 16 13 C 0.24 5.82 5.00 -5.19 -0.03 5.80 16 14 C -0.54 -14.04 9.39 -34.44 -0.32 -14.36 16 15 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 16 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -25.09 13.29 55.43 0.74 -24.35 16 18 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 19 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 C 0.07 1.02 5.31 -4.04 -0.02 0.99 16 23 C 0.43 6.69 3.29 37.16 0.12 6.81 16 24 F -0.18 -3.08 16.28 2.25 0.04 -3.05 16 25 F -0.19 -2.67 17.32 2.25 0.04 -2.63 16 26 F -0.19 -3.02 15.19 2.25 0.03 -2.98 16 27 C 0.09 1.52 6.05 -83.76 -0.51 1.01 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.09 0.83 8.13 -51.93 -0.42 0.40 16 30 H 0.12 1.96 4.79 -51.93 -0.25 1.71 16 31 H 0.21 1.58 8.06 -52.48 -0.42 1.16 16 32 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.14 1.70 7.77 -52.49 -0.41 1.30 16 35 H 0.04 1.04 7.31 -51.93 -0.38 0.66 16 36 H 0.05 1.37 7.35 -51.93 -0.38 0.98 16 37 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.13 1.88 8.07 -51.93 -0.42 1.46 16 39 H 0.12 1.53 4.87 -51.93 -0.25 1.27 16 LS Contribution 342.61 15.07 5.16 5.16 Total: -1.00 -32.66 342.61 -7.17 -39.83 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -3.75 Total: 1.22 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: -3.53 Total: 9.70 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.21 Total: -51.09 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.07 Total: -11.84 kcal Atomic # 9 Polarization: -8.77 SS G_CDS: 0.11 Total: -8.66 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.66 -7.17 -39.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439258482.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.222 kcal (2) G-P(sol) polarization free energy of solvation -32.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds