Wall clock time and date at job start Sat Apr 11 2020 06:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.36122 * 126.31522 * 2 1 4 4 N 1.30080 * 110.04607 * 180.02562 * 3 2 1 5 5 C 1.35845 * 109.53778 * 359.97438 * 4 3 2 6 6 C 1.39724 * 133.51110 * 180.02562 * 5 4 3 7 7 C 1.37842 * 120.10534 * 179.97438 * 6 5 4 8 8 C 1.38322 * 120.73097 * 359.97438 * 7 6 5 9 9 C 1.39399 * 120.28201 * 359.81162 * 8 7 6 10 10 C 1.47529 * 120.24903 * 180.02562 * 9 8 7 11 11 O 1.21591 * 120.00073 * 239.82839 * 10 9 8 12 12 N 1.34778 * 119.99754 * 59.82799 * 10 9 8 13 13 C 1.46498 * 119.99813 * 185.29287 * 12 10 9 14 14 C 1.50701 * 109.47157 * 90.00300 * 13 12 10 15 15 H 1.08004 * 119.99578 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00349 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99773 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00419 * 179.97438 * 16 14 13 19 19 H 1.48509 * 109.46864 * 60.00373 * 18 16 14 20 20 H 1.48493 * 109.47168 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47056 * 300.00551 * 18 16 14 22 22 C 1.46496 * 120.00027 * 5.29760 * 12 10 9 23 23 C 1.53004 * 109.47455 * 89.45363 * 22 12 10 24 24 F 1.39889 * 109.47156 * 59.99634 * 23 22 12 25 25 F 1.39899 * 109.47096 * 180.02562 * 23 22 12 26 26 F 1.39903 * 109.46452 * 299.99889 * 23 22 12 27 27 C 1.37519 * 126.30913 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.47258 * 263.93826 * 1 2 3 29 29 H 1.09000 * 109.47014 * 23.93479 * 1 2 3 30 30 H 1.09002 * 109.47696 * 143.93577 * 1 2 3 31 31 H 1.08008 * 124.97415 * 0.04315 * 3 2 1 32 32 H 1.07995 * 119.94339 * 0.02562 * 6 5 4 33 33 H 1.08002 * 119.63279 * 179.97438 * 7 6 5 34 34 H 1.08000 * 119.85804 * 180.02562 * 8 7 6 35 35 H 1.09004 * 109.47188 * 210.00329 * 13 12 10 36 36 H 1.08994 * 109.47559 * 330.00274 * 13 12 10 37 37 H 0.97003 * 120.00511 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.47333 * 209.45122 * 22 12 10 39 39 H 1.09003 * 109.47452 * 329.44815 * 22 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2711 1.0968 0.0000 4 7 3.5198 0.7324 -0.0005 5 6 3.5972 -0.6238 -0.0004 6 6 4.6638 -1.5265 -0.0003 7 6 4.4212 -2.8834 0.0005 8 6 3.1263 -3.3699 0.0016 9 6 2.0449 -2.4903 0.0061 10 6 0.6642 -3.0100 0.0079 11 8 -0.0933 -2.7268 -0.9001 12 7 0.2424 -3.7988 1.0161 13 6 -1.0883 -4.4091 0.9612 14 6 -0.9973 -5.7524 0.2841 15 1 -0.0435 -6.1153 -0.0694 16 6 -2.1314 -6.5184 0.1170 17 7 -3.2927 -6.0766 0.5480 18 14 -2.0187 -8.1831 -0.7228 19 1 -1.1011 -9.0634 0.0443 20 1 -3.3675 -8.8018 -0.7784 21 1 -1.4980 -8.0074 -2.1023 22 6 1.1146 -4.0458 2.1669 23 6 0.8723 -2.9726 3.2302 24 9 -0.4644 -3.0159 3.6404 25 9 1.7057 -3.2082 4.3289 26 9 1.1547 -1.7120 2.6931 27 6 2.2792 -1.1082 -0.0005 28 1 -0.3633 -0.1085 1.0219 29 1 -0.3633 0.9393 -0.4169 30 1 -0.3634 -0.8307 -0.6050 31 1 1.9246 2.1198 0.0007 32 1 5.6798 -1.1604 0.0001 33 1 5.2513 -3.5743 0.0001 34 1 2.9525 -4.4358 0.0026 35 1 -1.4711 -4.5377 1.9736 36 1 -1.7613 -3.7631 0.3976 37 1 -4.0907 -6.6153 0.4302 38 1 0.8947 -5.0279 2.5854 39 1 2.1562 -4.0121 1.8474 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439258482.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:43 Heat of formation + Delta-G solvation = -119.659705 kcal Electronic energy + Delta-G solvation = -31498.889143 eV Core-core repulsion = 26799.098129 eV Total energy + Delta-G solvation = -4699.791013 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.109 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.14694 -48.65587 -48.64854 -43.22981 -40.92247 -38.15839 -37.08752 -35.17267 -34.79859 -31.95164 -30.94502 -30.42690 -28.95199 -27.90610 -25.68884 -24.79629 -24.12616 -23.22912 -22.34918 -20.49113 -19.61885 -19.54250 -19.07024 -18.58197 -18.24939 -17.81895 -17.51540 -17.22946 -16.78083 -16.48872 -16.11650 -15.95310 -15.54182 -15.53615 -15.08286 -14.94240 -14.81324 -14.80350 -14.78868 -14.61280 -14.39384 -14.12032 -13.75313 -13.60123 -13.40695 -13.17805 -12.96772 -12.91239 -12.76286 -12.58219 -12.46103 -12.22491 -11.80761 -11.45848 -11.31847 -10.74338 -10.64045 -9.88431 -9.40341 -9.10995 -8.23940 -6.38529 -0.31639 0.48535 1.28908 1.40755 1.44061 1.50661 1.62275 1.68581 1.90360 1.93439 2.39931 2.75727 2.81269 2.97128 3.02829 3.10519 3.28932 3.49073 3.69537 3.86144 3.95062 4.02818 4.24723 4.25677 4.33513 4.36458 4.44942 4.68526 4.75579 4.86556 5.10888 5.15168 5.28882 5.36770 5.39186 5.48598 5.70890 5.80709 5.98701 6.13559 6.30096 6.68800 6.80365 7.01774 7.32776 8.83952 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.012935 B = 0.004599 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.193744 B = 6087.462272 C = 6538.431568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.490 5.490 3 C 0.267 3.733 4 N -0.521 5.521 5 C 0.020 3.980 6 C -0.048 4.048 7 C -0.118 4.118 8 C -0.078 4.078 9 C -0.138 4.138 10 C 0.561 3.439 11 O -0.562 6.562 12 N -0.589 5.589 13 C 0.261 3.739 14 C -0.546 4.546 15 H 0.064 0.936 16 C 0.013 3.987 17 N -0.926 5.926 18 Si 0.966 3.034 19 H -0.257 1.257 20 H -0.284 1.284 21 H -0.277 1.277 22 C 0.066 3.934 23 C 0.433 3.567 24 F -0.191 7.191 25 F -0.174 7.174 26 F -0.188 7.188 27 C 0.068 3.932 28 H 0.064 0.936 29 H 0.126 0.874 30 H 0.078 0.922 31 H 0.258 0.742 32 H 0.157 0.843 33 H 0.178 0.822 34 H 0.151 0.849 35 H 0.031 0.969 36 H 0.007 0.993 37 H 0.267 0.733 38 H 0.142 0.858 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.674 8.878 3.688 17.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.178 5.178 3 C -0.018 4.018 4 N -0.240 5.240 5 C -0.097 4.097 6 C -0.067 4.067 7 C -0.138 4.138 8 C -0.098 4.098 9 C -0.144 4.144 10 C 0.351 3.649 11 O -0.442 6.442 12 N -0.318 5.318 13 C 0.141 3.859 14 C -0.585 4.585 15 H 0.083 0.917 16 C -0.187 4.187 17 N -0.565 5.565 18 Si 0.791 3.209 19 H -0.182 1.182 20 H -0.209 1.209 21 H -0.203 1.203 22 C -0.060 4.060 23 C 0.377 3.623 24 F -0.173 7.173 25 F -0.156 7.156 26 F -0.170 7.170 27 C -0.044 4.044 28 H 0.083 0.917 29 H 0.145 0.855 30 H 0.097 0.903 31 H 0.273 0.727 32 H 0.174 0.826 33 H 0.196 0.804 34 H 0.168 0.832 35 H 0.049 0.951 36 H 0.025 0.975 37 H 0.076 0.924 38 H 0.160 0.840 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 14.585 9.536 3.257 17.728 hybrid contribution -1.740 -0.977 -0.158 2.002 sum 12.845 8.560 3.099 15.744 Atomic orbital electron populations 1.22444 0.75267 1.06948 1.03487 1.45357 1.08067 1.05523 1.58846 1.26261 0.84477 0.94589 0.96467 1.70496 1.19357 1.10380 1.23785 1.19451 0.92047 0.90972 1.07266 1.20810 0.97954 0.91614 0.96368 1.21192 0.96537 0.94953 1.01074 1.21390 0.91498 0.99567 0.97337 1.18839 0.93044 0.90951 1.11600 1.18716 0.87492 0.77332 0.81389 1.90667 1.57595 1.58929 1.36996 1.47979 1.18167 1.47514 1.18158 1.18980 0.77879 0.92084 0.96973 1.21643 0.94894 1.02620 1.39307 0.91736 1.25805 0.94651 1.02314 0.95906 1.70046 0.99573 1.39689 1.47220 0.85482 0.77551 0.79006 0.78887 1.18160 1.20915 1.20275 1.23043 0.99639 0.97977 0.85337 1.21535 0.73820 0.83627 0.83282 1.93187 1.36020 1.96538 1.91516 1.93177 1.71672 1.94324 1.56414 1.93176 1.93287 1.44600 1.85910 1.18749 0.92206 0.88284 1.05130 0.91698 0.85521 0.90308 0.72658 0.82551 0.80423 0.83154 0.95066 0.97478 0.92385 0.83989 0.83575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.65 10.51 127.77 1.34 2.99 16 2 N -0.49 -14.01 3.19 -542.88 -1.73 -15.74 16 3 C 0.27 6.19 12.50 180.04 2.25 8.44 16 4 N -0.52 -14.53 11.28 -192.02 -2.17 -16.70 16 5 C 0.02 0.59 7.22 39.41 0.28 0.88 16 6 C -0.05 -1.07 10.09 22.54 0.23 -0.84 16 7 C -0.12 -2.25 9.99 22.20 0.22 -2.03 16 8 C -0.08 -1.97 7.63 22.57 0.17 -1.80 16 9 C -0.14 -4.55 3.96 -20.07 -0.08 -4.63 16 10 C 0.56 22.86 5.83 86.69 0.51 23.36 16 11 O -0.56 -27.48 13.87 -4.00 -0.06 -27.54 16 12 N -0.59 -23.60 2.37 -829.93 -1.97 -25.57 16 13 C 0.26 13.14 5.00 85.63 0.43 13.57 16 14 C -0.55 -29.10 9.39 25.60 0.24 -28.86 16 15 H 0.06 3.30 7.81 -2.91 -0.02 3.28 16 16 C 0.01 0.71 5.46 84.65 0.46 1.17 16 17 N -0.93 -53.65 13.29 21.45 0.28 -53.37 16 18 Si 0.97 42.44 29.54 68.60 2.03 44.46 16 19 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 20 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 22 C 0.07 1.99 5.31 86.38 0.46 2.45 16 23 C 0.43 13.34 3.29 71.98 0.24 13.58 16 24 F -0.19 -6.83 16.28 44.97 0.73 -6.10 16 25 F -0.17 -4.74 17.32 44.97 0.78 -3.96 16 26 F -0.19 -6.12 15.19 44.97 0.68 -5.43 16 27 C 0.07 2.18 6.05 39.26 0.24 2.42 16 28 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.13 2.30 8.13 -2.39 -0.02 2.28 16 30 H 0.08 2.85 4.79 -2.39 -0.01 2.83 16 31 H 0.26 3.03 8.06 -2.91 -0.02 3.00 16 32 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 33 H 0.18 1.88 8.06 -2.91 -0.02 1.85 16 34 H 0.15 3.33 7.77 -2.91 -0.02 3.30 16 35 H 0.03 1.62 7.31 -2.38 -0.02 1.61 16 36 H 0.01 0.42 7.35 -2.39 -0.02 0.40 16 37 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 38 H 0.14 3.95 8.07 -2.39 -0.02 3.93 16 39 H 0.15 3.54 4.87 -2.39 -0.01 3.53 16 Total: -1.00 -74.48 342.61 6.69 -67.79 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 1.12 Total: 11.46 kcal Atomic # 6 Polarization: 23.71 SS G_CDS: 6.99 Total: 30.70 kcal Atomic # 7 Polarization: -105.79 SS G_CDS: -5.59 Total: -111.38 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.06 Total: -27.54 kcal Atomic # 9 Polarization: -17.68 SS G_CDS: 2.19 Total: -15.49 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -74.48 6.69 -67.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439258482.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.870 kcal (2) G-P(sol) polarization free energy of solvation -74.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds