Wall clock time and date at job start Sat Apr 11 2020 06:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45201 * 109.47255 * 2 1 4 4 C 1.34710 * 116.99771 * 180.02562 * 3 2 1 5 5 O 1.21471 * 120.00412 * 359.97438 * 4 3 2 6 6 C 1.47733 * 119.99816 * 180.02562 * 4 3 2 7 7 C 1.39654 * 120.14706 * 353.80067 * 6 4 3 8 8 C 1.37917 * 119.84518 * 180.31807 * 7 6 4 9 9 C 1.38392 * 120.15209 * 359.71167 * 8 7 6 10 10 C 1.38348 * 120.30321 * 359.97438 * 9 8 7 11 11 C 1.37970 * 120.14883 * 0.02562 * 10 9 8 12 12 S 1.76194 * 120.07767 * 179.97438 * 11 10 9 13 13 O 1.42106 * 106.40172 * 259.08147 * 12 11 10 14 14 O 1.42092 * 106.40426 * 126.16196 * 12 11 10 15 15 N 1.65602 * 107.21670 * 12.61655 * 12 11 10 16 16 C 1.46500 * 120.00469 * 274.11746 * 15 12 11 17 17 C 1.52997 * 109.47312 * 265.00481 * 16 15 12 18 18 C 1.46503 * 119.99570 * 94.12078 * 15 12 11 19 19 C 1.50707 * 109.47110 * 94.38263 * 18 15 12 20 20 H 1.08002 * 119.99871 * 359.97438 * 19 18 15 21 21 C 1.37871 * 119.99884 * 180.02562 * 19 18 15 22 22 N 1.31513 * 120.00316 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00083 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47032 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47256 * 119.99514 * 23 21 19 26 26 H 1.48494 * 109.47119 * 239.99638 * 23 21 19 27 27 H 1.08999 * 109.47439 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47256 * 299.99561 * 1 2 3 29 29 H 1.09001 * 109.47533 * 59.99928 * 1 2 3 30 30 H 1.09000 * 109.47133 * 239.99736 * 2 1 3 31 31 H 1.09004 * 109.47161 * 120.00443 * 2 1 3 32 32 H 1.08004 * 120.07573 * 0.03074 * 7 6 4 33 33 H 1.08001 * 119.92485 * 179.72272 * 8 7 6 34 34 H 1.07995 * 119.85096 * 180.02562 * 9 8 7 35 35 H 1.07996 * 119.92718 * 180.02562 * 10 9 8 36 36 H 1.09002 * 109.46674 * 25.00372 * 16 15 12 37 37 H 1.08997 * 109.46875 * 145.00058 * 16 15 12 38 38 H 1.09002 * 109.47161 * 299.99592 * 17 16 15 39 39 H 1.08993 * 109.47528 * 59.99449 * 17 16 15 40 40 H 1.08999 * 109.46883 * 180.02562 * 17 16 15 41 41 H 1.09003 * 109.47183 * 214.37901 * 18 15 12 42 42 H 1.08994 * 109.47280 * 334.38099 * 18 15 12 43 43 H 0.96996 * 120.00579 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3495 1.5454 -0.0005 5 8 4.0894 0.5821 -0.0005 6 6 3.9142 2.9105 0.0000 7 6 3.0728 4.0176 -0.1294 8 6 3.6073 5.2890 -0.1347 9 6 4.9734 5.4693 -0.0062 10 6 5.8120 4.3773 0.1288 11 6 5.2906 3.0999 0.1357 12 16 6.3604 1.7104 0.3072 13 8 6.5337 1.1741 -0.9973 14 8 5.8605 0.9514 1.3994 15 7 7.8405 2.2863 0.7763 16 6 8.8034 2.7388 -0.2309 17 6 9.7625 1.5958 -0.5693 18 6 8.1870 2.3432 2.1986 19 6 8.9373 1.0941 2.5833 20 1 9.1358 0.3337 1.8424 21 6 9.3694 0.9216 3.8811 22 7 9.1273 1.8473 4.7833 23 14 10.2989 -0.6270 4.3581 24 1 10.4412 -1.5049 3.1689 25 1 11.6453 -0.2598 4.8655 26 1 9.5496 -1.3470 5.4188 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.0065 3.8783 -0.2297 33 1 2.9582 6.1459 -0.2391 34 1 5.3867 6.4670 -0.0106 35 1 6.8771 4.5250 0.2290 36 1 8.2706 3.0447 -1.1312 37 1 9.3692 3.5839 0.1613 38 1 10.2953 1.2899 0.3310 39 1 9.1967 0.7507 -0.9614 40 1 10.4791 1.9327 -1.3183 41 1 8.8136 3.2154 2.3853 42 1 7.2757 2.4169 2.7919 43 1 9.4316 1.7262 5.6963 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000442941710.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:47 Heat of formation + Delta-G solvation = -122.783961 kcal Electronic energy + Delta-G solvation = -28920.157626 eV Core-core repulsion = 24865.239075 eV Total energy + Delta-G solvation = -4054.918551 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.74313 -38.91451 -36.85967 -36.30661 -36.03189 -34.82370 -32.56892 -32.31280 -31.45496 -31.18325 -29.77293 -26.72903 -25.12208 -23.27018 -22.95707 -22.75162 -21.87519 -21.17143 -18.84929 -17.98548 -17.24123 -16.72055 -16.70438 -16.62137 -16.27544 -15.30624 -15.10591 -15.05316 -14.48805 -14.46129 -14.24690 -13.69607 -13.55824 -13.14060 -12.95688 -12.88895 -12.84382 -12.52976 -12.17698 -12.09715 -11.87428 -11.76723 -11.70322 -11.41474 -11.18189 -11.04896 -10.94440 -10.91249 -10.67533 -10.56228 -10.41627 -10.34693 -10.24576 -9.83788 -9.58396 -9.49219 -9.26981 -8.39144 -8.08645 -6.01499 -4.03920 0.31540 0.91100 1.08560 2.36523 2.44902 3.34792 3.42534 3.42756 3.48390 3.73655 4.30359 4.45011 4.49983 4.62395 4.71010 4.79782 4.81231 4.97845 5.09139 5.16298 5.32227 5.35513 5.41658 5.44810 5.47334 5.60452 5.63220 5.74980 5.80844 5.84687 5.90701 5.99349 6.07091 6.18318 6.27105 6.45184 6.54048 6.74468 7.04320 7.23928 7.43507 7.56936 7.65016 7.96753 8.25836 8.98502 9.60594 11.07555 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012177 B = 0.004334 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.942571 B = 6459.003188 C = 7409.112362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.348 6.348 4 C 0.493 3.507 5 O -0.473 6.473 6 C -0.037 4.037 7 C -0.080 4.080 8 C -0.093 4.093 9 C -0.102 4.102 10 C -0.042 4.042 11 C -0.613 4.613 12 S 2.695 3.305 13 O -0.962 6.962 14 O -0.922 6.922 15 N -0.991 5.991 16 C 0.128 3.872 17 C -0.173 4.173 18 C 0.253 3.747 19 C -0.523 4.523 20 H 0.065 0.935 21 C 0.062 3.938 22 N -0.897 5.897 23 Si 0.894 3.106 24 H -0.271 1.271 25 H -0.284 1.284 26 H -0.283 1.283 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.145 0.855 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.148 0.852 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.038 0.962 42 H 0.041 0.959 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.527 8.004 -11.426 19.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 O -0.265 6.265 4 C 0.336 3.664 5 O -0.361 6.361 6 C -0.039 4.039 7 C -0.099 4.099 8 C -0.111 4.111 9 C -0.120 4.120 10 C -0.060 4.060 11 C -0.693 4.693 12 S 2.778 3.222 13 O -0.952 6.952 14 O -0.912 6.912 15 N -0.832 5.832 16 C 0.002 3.998 17 C -0.232 4.232 18 C 0.131 3.869 19 C -0.562 4.562 20 H 0.083 0.917 21 C -0.140 4.140 22 N -0.536 5.536 23 Si 0.722 3.278 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.209 1.209 27 H 0.100 0.900 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.163 0.837 33 H 0.156 0.844 34 H 0.156 0.844 35 H 0.165 0.835 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.590 6.918 -11.376 19.025 hybrid contribution 0.296 -0.154 0.504 0.605 sum -13.294 6.763 -10.872 18.458 Atomic orbital electron populations 1.21810 0.92378 1.03140 1.03449 1.23185 0.95304 0.79518 1.03613 1.86459 1.22628 1.33082 1.84330 1.21241 0.81539 0.89679 0.73911 1.90931 1.59394 1.42133 1.43606 1.18541 0.91964 0.90701 1.02736 1.21531 1.00237 0.91640 0.96465 1.21380 0.95560 0.97059 0.97119 1.21586 0.93785 0.99474 0.97205 1.21018 1.01057 0.90361 0.93570 1.31977 1.08404 1.19760 1.09197 1.02503 0.72288 0.73319 0.74088 1.93504 1.85966 1.74908 1.40781 1.93592 1.79079 1.64624 1.53919 1.57782 1.28209 1.81256 1.15987 1.21083 0.91553 0.97562 0.89632 1.22251 0.99483 0.99163 1.02294 1.19154 0.97086 0.98115 0.72498 1.21558 1.35308 1.04253 0.95103 0.91720 1.24915 0.96219 0.96644 0.96220 1.69924 1.46786 1.33854 1.03071 0.86500 0.79246 0.83362 0.78736 1.19558 1.21024 1.20862 0.89995 0.91363 0.91523 0.90690 0.90309 0.83728 0.84434 0.84365 0.83477 0.92110 0.90739 0.90164 0.92481 0.92990 0.94449 0.94150 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.29 37.15 0.38 -0.80 16 2 C 0.06 0.68 6.19 37.15 0.23 0.91 16 3 O -0.35 -5.00 9.49 -40.52 -0.38 -5.38 16 4 C 0.49 8.95 7.74 34.61 0.27 9.22 16 5 O -0.47 -10.39 11.64 -29.59 -0.34 -10.74 16 6 C -0.04 -0.62 5.87 -104.98 -0.62 -1.24 16 7 C -0.08 -0.97 9.62 -39.17 -0.38 -1.35 16 8 C -0.09 -0.93 10.03 -39.64 -0.40 -1.32 16 9 C -0.10 -1.10 10.04 -39.48 -0.40 -1.50 16 10 C -0.04 -0.59 9.56 -39.64 -0.38 -0.97 16 11 C -0.61 -11.08 5.86 -39.17 -0.23 -11.31 16 12 S 2.69 60.58 3.90 -107.50 -0.42 60.16 16 13 O -0.96 -22.63 16.47 -64.53 -1.06 -23.69 16 14 O -0.92 -24.45 14.47 -67.03 -0.97 -25.42 16 15 N -0.99 -21.16 1.94 -115.66 -0.22 -21.39 16 16 C 0.13 2.22 5.27 -4.04 -0.02 2.20 16 17 C -0.17 -3.11 9.85 37.16 0.37 -2.75 16 18 C 0.25 6.35 5.13 -5.19 -0.03 6.33 16 19 C -0.52 -14.69 8.42 -34.44 -0.29 -14.98 16 20 H 0.06 1.83 6.96 -52.49 -0.37 1.46 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 22 N -0.90 -26.26 13.29 55.43 0.74 -25.53 16 23 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 24 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 26 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.14 1.35 7.63 -52.48 -0.40 0.95 16 33 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 34 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.15 1.88 6.58 -52.49 -0.35 1.53 16 36 H 0.06 0.90 7.72 -51.93 -0.40 0.50 16 37 H 0.07 1.12 8.00 -51.93 -0.42 0.71 16 38 H 0.08 1.60 6.65 -51.93 -0.35 1.25 16 39 H 0.06 1.10 8.04 -51.93 -0.42 0.69 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.04 0.92 8.00 -51.93 -0.42 0.51 16 42 H 0.04 1.10 7.52 -51.93 -0.39 0.71 16 43 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 371.76 15.07 5.60 5.60 Total: -1.00 -36.98 371.76 -9.69 -46.67 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -6.01 Total: -1.47 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -1.58 Total: -15.89 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: 0.51 Total: -46.92 kcal Atomic # 8 Polarization: -62.47 SS G_CDS: -2.76 Total: -65.24 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 60.58 SS G_CDS: -0.42 Total: 60.16 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.98 -9.69 -46.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000442941710.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.115 kcal (2) G-P(sol) polarization free energy of solvation -36.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds