Wall clock time and date at job start Sat Apr 11 2020 06:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45201 * 109.47255 * 2 1 4 4 C 1.34710 * 116.99771 * 180.02562 * 3 2 1 5 5 O 1.21471 * 120.00412 * 359.97438 * 4 3 2 6 6 C 1.47733 * 119.99816 * 180.02562 * 4 3 2 7 7 C 1.39654 * 120.14706 * 353.80067 * 6 4 3 8 8 C 1.37917 * 119.84518 * 180.31807 * 7 6 4 9 9 C 1.38392 * 120.15209 * 359.71167 * 8 7 6 10 10 C 1.38348 * 120.30321 * 359.97438 * 9 8 7 11 11 C 1.37970 * 120.14883 * 0.02562 * 10 9 8 12 12 S 1.76194 * 120.07767 * 179.97438 * 11 10 9 13 13 O 1.42106 * 106.40172 * 259.08147 * 12 11 10 14 14 O 1.42092 * 106.40426 * 126.16196 * 12 11 10 15 15 N 1.65602 * 107.21670 * 12.61655 * 12 11 10 16 16 C 1.46500 * 120.00469 * 274.11746 * 15 12 11 17 17 C 1.52997 * 109.47312 * 265.00481 * 16 15 12 18 18 C 1.46503 * 119.99570 * 94.12078 * 15 12 11 19 19 C 1.50707 * 109.47110 * 94.38263 * 18 15 12 20 20 H 1.08002 * 119.99871 * 359.97438 * 19 18 15 21 21 C 1.37871 * 119.99884 * 180.02562 * 19 18 15 22 22 N 1.31513 * 120.00316 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00083 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47032 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47256 * 119.99514 * 23 21 19 26 26 H 1.48494 * 109.47119 * 239.99638 * 23 21 19 27 27 H 1.08999 * 109.47439 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47256 * 299.99561 * 1 2 3 29 29 H 1.09001 * 109.47533 * 59.99928 * 1 2 3 30 30 H 1.09000 * 109.47133 * 239.99736 * 2 1 3 31 31 H 1.09004 * 109.47161 * 120.00443 * 2 1 3 32 32 H 1.08004 * 120.07573 * 0.03074 * 7 6 4 33 33 H 1.08001 * 119.92485 * 179.72272 * 8 7 6 34 34 H 1.07995 * 119.85096 * 180.02562 * 9 8 7 35 35 H 1.07996 * 119.92718 * 180.02562 * 10 9 8 36 36 H 1.09002 * 109.46674 * 25.00372 * 16 15 12 37 37 H 1.08997 * 109.46875 * 145.00058 * 16 15 12 38 38 H 1.09002 * 109.47161 * 299.99592 * 17 16 15 39 39 H 1.08993 * 109.47528 * 59.99449 * 17 16 15 40 40 H 1.08999 * 109.46883 * 180.02562 * 17 16 15 41 41 H 1.09003 * 109.47183 * 214.37901 * 18 15 12 42 42 H 1.08994 * 109.47280 * 334.38099 * 18 15 12 43 43 H 0.96996 * 120.00579 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3495 1.5454 -0.0005 5 8 4.0894 0.5821 -0.0005 6 6 3.9142 2.9105 0.0000 7 6 3.0728 4.0176 -0.1294 8 6 3.6073 5.2890 -0.1347 9 6 4.9734 5.4693 -0.0062 10 6 5.8120 4.3773 0.1288 11 6 5.2906 3.0999 0.1357 12 16 6.3604 1.7104 0.3072 13 8 6.5337 1.1741 -0.9973 14 8 5.8605 0.9514 1.3994 15 7 7.8405 2.2863 0.7763 16 6 8.8034 2.7388 -0.2309 17 6 9.7625 1.5958 -0.5693 18 6 8.1870 2.3432 2.1986 19 6 8.9373 1.0941 2.5833 20 1 9.1358 0.3337 1.8424 21 6 9.3694 0.9216 3.8811 22 7 9.1273 1.8473 4.7833 23 14 10.2989 -0.6270 4.3581 24 1 10.4412 -1.5049 3.1689 25 1 11.6453 -0.2598 4.8655 26 1 9.5496 -1.3470 5.4188 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.0065 3.8783 -0.2297 33 1 2.9582 6.1459 -0.2391 34 1 5.3867 6.4670 -0.0106 35 1 6.8771 4.5250 0.2290 36 1 8.2706 3.0447 -1.1312 37 1 9.3692 3.5839 0.1613 38 1 10.2953 1.2899 0.3310 39 1 9.1967 0.7507 -0.9614 40 1 10.4791 1.9327 -1.3183 41 1 8.8136 3.2154 2.3853 42 1 7.2757 2.4169 2.7919 43 1 9.4316 1.7262 5.6963 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000442941710.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:46 Heat of formation + Delta-G solvation = -147.831570 kcal Electronic energy + Delta-G solvation = -28921.243772 eV Core-core repulsion = 24865.239075 eV Total energy + Delta-G solvation = -4056.004697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.00070 -39.95865 -38.24673 -38.02272 -37.71420 -36.61857 -34.67030 -33.30227 -32.50115 -32.10839 -31.44237 -28.70761 -26.21732 -24.73356 -24.27391 -23.91123 -23.44098 -22.38557 -20.21328 -19.35823 -18.78602 -18.57059 -18.13923 -17.87597 -17.78610 -17.10440 -16.41800 -16.10523 -16.09311 -15.59917 -15.50889 -15.29297 -14.79819 -14.64133 -14.50832 -14.02703 -13.96667 -13.72951 -13.64434 -13.55212 -13.17738 -13.13655 -13.00351 -12.88845 -12.83891 -12.79492 -12.67263 -12.63102 -12.25536 -12.16263 -12.00568 -11.69673 -11.68080 -11.63939 -11.45722 -10.57473 -10.54233 -10.29358 -9.87217 -8.19595 -6.28601 -0.83415 -0.56445 -0.08038 1.15977 1.29880 1.35733 1.39066 1.50460 2.13951 2.40758 2.41476 2.87657 3.11902 3.24324 3.57414 3.72163 3.86440 3.91060 3.96411 3.98395 4.15308 4.19217 4.25574 4.33169 4.44429 4.51526 4.61795 4.71757 4.75538 4.83554 4.87627 4.95270 4.98783 5.05632 5.15982 5.16823 5.19700 5.25395 5.46066 5.56284 5.66241 5.73186 5.94909 6.13168 6.27692 6.78381 7.38774 8.88823 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012177 B = 0.004334 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.942571 B = 6459.003188 C = 7409.112362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.044 3.956 3 O -0.334 6.334 4 C 0.485 3.515 5 O -0.527 6.527 6 C -0.075 4.075 7 C -0.068 4.068 8 C -0.071 4.071 9 C -0.087 4.087 10 C -0.052 4.052 11 C -0.639 4.639 12 S 2.695 3.305 13 O -0.991 6.991 14 O -0.984 6.984 15 N -0.993 5.993 16 C 0.116 3.884 17 C -0.174 4.174 18 C 0.270 3.730 19 C -0.540 4.540 20 H 0.051 0.949 21 C 0.014 3.986 22 N -0.923 5.923 23 Si 0.949 3.051 24 H -0.273 1.273 25 H -0.265 1.265 26 H -0.282 1.282 27 H 0.103 0.897 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.175 0.825 33 H 0.194 0.806 34 H 0.187 0.813 35 H 0.157 0.843 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.054 0.946 39 H 0.031 0.969 40 H 0.092 0.908 41 H 0.044 0.956 42 H 0.011 0.989 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.881 11.557 -12.484 22.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.029 4.029 3 O -0.250 6.250 4 C 0.330 3.670 5 O -0.419 6.419 6 C -0.077 4.077 7 C -0.087 4.087 8 C -0.088 4.088 9 C -0.105 4.105 10 C -0.071 4.071 11 C -0.726 4.726 12 S 2.787 3.213 13 O -0.981 6.981 14 O -0.974 6.974 15 N -0.833 5.833 16 C -0.009 4.009 17 C -0.232 4.232 18 C 0.147 3.853 19 C -0.580 4.580 20 H 0.070 0.930 21 C -0.185 4.185 22 N -0.564 5.564 23 Si 0.774 3.226 24 H -0.198 1.198 25 H -0.190 1.190 26 H -0.208 1.208 27 H 0.121 0.879 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.192 0.808 33 H 0.212 0.788 34 H 0.204 0.796 35 H 0.174 0.826 36 H 0.107 0.893 37 H 0.122 0.878 38 H 0.073 0.927 39 H 0.051 0.949 40 H 0.111 0.889 41 H 0.062 0.938 42 H 0.029 0.971 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.907 10.427 -12.447 22.042 hybrid contribution 0.570 -1.105 0.752 1.453 sum -14.337 9.322 -11.695 20.718 Atomic orbital electron populations 1.21830 0.88558 1.04858 1.04372 1.23545 0.98166 0.78479 1.02759 1.86464 1.20689 1.34383 1.83497 1.21862 0.82297 0.90182 0.72611 1.90899 1.60617 1.43913 1.46449 1.18746 0.92101 0.91234 1.05642 1.21983 1.01167 0.91139 0.94419 1.22087 0.95933 0.97521 0.93252 1.22178 0.93903 1.00199 0.94229 1.21359 1.02376 0.89917 0.93414 1.31088 1.08213 1.19025 1.14316 1.01718 0.72611 0.74281 0.72733 1.93440 1.86541 1.76882 1.41276 1.93500 1.80071 1.68173 1.55702 1.57554 1.29120 1.81620 1.15055 1.21477 0.91363 0.98087 0.89926 1.22249 1.00013 0.98831 1.02150 1.18724 0.95232 0.97047 0.74299 1.21856 1.35655 1.05186 0.95272 0.93033 1.25657 0.97121 0.99474 0.96235 1.69996 1.47621 1.35301 1.03432 0.85641 0.78845 0.79913 0.78153 1.19797 1.18980 1.20786 0.87872 0.90797 0.90125 0.90987 0.92023 0.80766 0.78849 0.79571 0.82583 0.89309 0.87782 0.92696 0.94950 0.88915 0.93785 0.97060 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 10.29 71.98 0.74 -1.27 16 2 C 0.04 1.09 6.19 71.98 0.45 1.53 16 3 O -0.33 -9.79 9.49 -56.20 -0.53 -10.33 16 4 C 0.48 18.56 7.74 70.33 0.54 19.10 16 5 O -0.53 -25.29 11.64 29.82 0.35 -24.95 16 6 C -0.07 -2.50 5.87 -20.10 -0.12 -2.62 16 7 C -0.07 -1.43 9.62 22.54 0.22 -1.21 16 8 C -0.07 -0.98 10.03 22.23 0.22 -0.76 16 9 C -0.09 -1.42 10.04 22.33 0.22 -1.19 16 10 C -0.05 -1.38 9.56 22.23 0.21 -1.17 16 11 C -0.64 -23.42 5.86 22.54 0.13 -23.29 16 12 S 2.69 129.11 3.90 -56.49 -0.22 128.89 16 13 O -0.99 -49.92 16.47 -120.96 -1.99 -51.92 16 14 O -0.98 -56.99 14.47 -118.58 -1.72 -58.70 16 15 N -0.99 -44.10 1.94 -519.84 -1.01 -45.11 16 16 C 0.12 4.01 5.27 86.38 0.46 4.47 16 17 C -0.17 -6.35 9.85 71.98 0.71 -5.64 16 18 C 0.27 14.15 5.13 85.63 0.44 14.59 16 19 C -0.54 -31.70 8.42 25.60 0.22 -31.48 16 20 H 0.05 3.08 6.96 -2.91 -0.02 3.06 16 21 C 0.01 0.84 5.46 84.65 0.46 1.30 16 22 N -0.92 -55.17 13.29 21.44 0.28 -54.88 16 23 Si 0.95 46.36 29.54 68.60 2.03 48.39 16 24 H -0.27 -13.31 7.11 99.48 0.71 -12.60 16 25 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 26 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 27 H 0.10 1.07 8.14 -2.39 -0.02 1.06 16 28 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.17 2.51 7.63 -2.91 -0.02 2.49 16 33 H 0.19 0.66 8.06 -2.91 -0.02 0.64 16 34 H 0.19 1.31 8.06 -2.91 -0.02 1.29 16 35 H 0.16 3.70 6.58 -2.91 -0.02 3.68 16 36 H 0.09 2.57 7.72 -2.39 -0.02 2.55 16 37 H 0.10 2.97 8.00 -2.39 -0.02 2.95 16 38 H 0.05 2.26 6.65 -2.39 -0.02 2.25 16 39 H 0.03 1.30 8.04 -2.39 -0.02 1.28 16 40 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.04 2.22 8.00 -2.39 -0.02 2.20 16 42 H 0.01 0.66 7.52 -2.39 -0.02 0.64 16 43 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -90.06 371.76 3.10 -86.95 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 1.02 Total: 9.29 kcal Atomic # 6 Polarization: -32.54 SS G_CDS: 4.90 Total: -27.63 kcal Atomic # 7 Polarization: -99.27 SS G_CDS: -0.73 Total: -99.99 kcal Atomic # 8 Polarization: -142.00 SS G_CDS: -3.89 Total: -145.89 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Atomic # 16 Polarization: 129.11 SS G_CDS: -0.22 Total: 128.89 kcal Total: -90.06 3.10 -86.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000442941710.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.877 kcal (2) G-P(sol) polarization free energy of solvation -90.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds