Wall clock time and date at job start Sat Apr 11 2020 06:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 120.00109 * 2 1 4 4 H 1.08997 * 110.75303 * 182.01562 * 3 2 1 5 5 C 1.54375 * 110.84737 * 58.54117 * 3 2 1 6 6 O 1.43246 * 107.59104 * 220.45443 * 5 3 2 7 7 C 1.43651 * 109.96783 * 358.29067 * 6 5 3 8 8 C 1.54943 * 105.13422 * 24.42584 * 7 6 5 9 9 H 1.09004 * 111.12559 * 81.47640 * 8 7 6 10 10 O 1.42899 * 111.12558 * 205.63549 * 8 7 6 11 11 S 1.65596 * 119.99931 * 179.97438 * 2 1 3 12 12 O 1.42103 * 104.27991 * 153.92823 * 11 2 1 13 13 O 1.42104 * 104.27822 * 26.07545 * 11 2 1 14 14 C 1.81394 * 104.45128 * 270.00269 * 11 2 1 15 15 C 1.50701 * 109.47009 * 180.02562 * 14 11 2 16 16 C 1.38630 * 119.75114 * 90.00125 * 15 14 11 17 17 C 1.37614 * 120.25280 * 179.74292 * 16 15 14 18 18 C 1.40720 * 119.74449 * 0.25200 * 17 16 15 19 19 C 1.41399 * 120.24771 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99389 * 24.39848 * 19 18 17 21 21 C 1.39934 * 120.00288 * 204.39463 * 19 18 17 22 22 N 1.30829 * 119.99890 * 17.88319 * 21 19 18 23 23 Si 1.86802 * 120.00236 * 197.88038 * 21 19 18 24 24 H 1.48499 * 109.47060 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46940 * 120.00027 * 23 21 19 26 26 H 1.48495 * 109.47345 * 240.00333 * 23 21 19 27 27 C 1.40714 * 119.50925 * 0.02562 * 18 17 16 28 28 C 1.37623 * 119.74842 * 359.97438 * 27 18 17 29 29 H 1.08997 * 109.47776 * 270.00301 * 1 2 3 30 30 H 1.09003 * 109.47290 * 30.00469 * 1 2 3 31 31 H 1.08996 * 109.47156 * 149.99983 * 1 2 3 32 32 H 1.09004 * 109.83508 * 339.96645 * 5 3 2 33 33 H 1.09008 * 109.83211 * 100.85171 * 5 3 2 34 34 H 1.08997 * 110.30597 * 143.34201 * 7 6 5 35 35 H 1.09000 * 110.30621 * 265.51519 * 7 6 5 36 36 H 0.96706 * 113.99798 * 291.56105 * 10 8 7 37 37 H 1.09003 * 109.47004 * 60.00318 * 14 11 2 38 38 H 1.09000 * 109.47133 * 299.99627 * 14 11 2 39 39 H 1.08004 * 119.87662 * 0.02562 * 16 15 14 40 40 H 1.08003 * 120.13152 * 180.23523 * 17 16 15 41 41 H 0.97006 * 119.99959 * 179.97438 * 22 21 19 42 42 H 1.07997 * 120.12574 * 179.97438 * 27 18 17 43 43 H 1.07992 * 119.88084 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 1 3.2728 1.0939 -0.0358 5 6 1.8202 2.1210 1.2306 6 8 1.7125 3.4823 0.7979 7 6 2.0286 3.5791 -0.6000 8 6 1.7402 2.1710 -1.1785 9 1 0.6776 2.0406 -1.3836 10 8 2.5222 1.9250 -2.3489 11 16 2.2930 -1.4341 0.0006 12 8 3.5395 -1.1195 -0.6047 13 8 1.3969 -2.3564 -0.6043 14 6 2.5192 -1.8254 1.7574 15 6 3.2704 -3.1252 1.8898 16 6 4.6553 -3.1162 1.9502 17 6 5.3514 -4.2966 2.0764 18 6 4.6522 -5.5162 2.1388 19 6 5.3567 -6.7354 2.2680 20 1 6.3449 -6.7443 2.7037 21 6 4.7736 -7.9301 1.8314 22 7 3.7606 -7.8995 1.0040 23 14 5.4416 -9.5688 2.4297 24 1 6.5810 -9.3318 3.3521 25 1 4.3711 -10.3080 3.1459 26 1 5.9035 -10.3693 1.2674 27 6 3.2467 -5.5136 2.0707 28 6 2.5713 -4.3212 1.9445 29 1 -0.3634 0.0001 1.0276 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3633 -0.8899 -0.5138 32 1 0.8652 1.7848 1.6346 33 1 2.5950 2.0339 1.9924 34 1 1.3934 4.3231 -1.0808 35 1 3.0797 3.8349 -0.7333 36 1 2.2717 2.4662 -3.1102 37 1 1.5450 -1.9178 2.2374 38 1 3.0866 -1.0279 2.2371 39 1 5.1899 -2.1790 1.9026 40 1 6.4302 -4.2871 2.1271 41 1 3.3566 -8.7278 0.7011 42 1 2.7001 -6.4439 2.1173 43 1 1.4927 -4.3167 1.8925 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566972416.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:14 Heat of formation + Delta-G solvation = -136.685632 kcal Electronic energy + Delta-G solvation = -27971.747859 eV Core-core repulsion = 23916.226487 eV Total energy + Delta-G solvation = -4055.521373 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.19168 -37.79558 -36.68894 -36.51821 -35.87575 -35.37229 -34.18264 -31.52276 -30.13285 -29.45305 -28.97476 -27.86894 -26.36562 -24.25471 -22.92603 -21.37098 -21.17934 -20.29843 -19.02138 -18.10284 -17.45498 -17.34109 -16.90543 -16.15418 -15.99619 -15.50954 -15.41677 -15.08314 -14.53436 -14.34856 -14.14571 -13.92758 -13.75115 -13.38043 -13.33394 -12.92583 -12.71681 -12.55994 -12.28359 -12.17798 -12.09041 -11.90384 -11.59711 -11.55306 -11.38593 -11.32289 -11.15768 -11.04823 -11.01594 -10.61592 -10.47590 -10.32839 -9.85574 -9.81439 -9.54758 -9.29813 -9.06211 -7.62814 -7.46025 -6.92741 -4.50290 0.52975 2.61068 2.81225 2.94671 3.00436 3.05118 3.08797 3.29784 3.81779 3.96201 4.03231 4.23918 4.41727 4.46228 4.48792 4.59720 4.70705 4.83963 4.88291 5.20254 5.25115 5.30974 5.34692 5.39487 5.42340 5.47096 5.52973 5.70128 5.93347 6.02495 6.18209 6.24108 6.39542 6.55724 6.82434 6.91021 7.08616 7.17377 7.29503 7.44748 7.65366 7.88518 7.89558 8.11621 8.46801 8.71189 8.79029 10.00559 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.028423 B = 0.002598 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.877729 B =10773.765218 C =10923.231450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.999 5.999 3 C 0.121 3.879 4 H 0.128 0.872 5 C 0.038 3.962 6 O -0.374 6.374 7 C 0.021 3.979 8 C 0.058 3.942 9 H 0.083 0.917 10 O -0.541 6.541 11 S 2.570 3.430 12 O -0.952 6.952 13 O -0.955 6.955 14 C -0.518 4.518 15 C -0.239 4.239 16 C -0.067 4.067 17 C -0.225 4.225 18 C 0.117 3.883 19 C -0.447 4.447 20 H 0.084 0.916 21 C 0.072 3.928 22 N -0.778 5.778 23 Si 0.913 3.087 24 H -0.259 1.259 25 H -0.270 1.270 26 H -0.272 1.272 27 C -0.167 4.167 28 C -0.080 4.080 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.380 0.620 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.285 0.715 42 H 0.123 0.877 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.294 17.254 -1.057 18.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.833 5.833 3 C 0.014 3.986 4 H 0.146 0.854 5 C -0.040 4.040 6 O -0.293 6.293 7 C -0.057 4.057 8 C -0.003 4.003 9 H 0.101 0.899 10 O -0.346 6.346 11 S 2.671 3.329 12 O -0.943 6.943 13 O -0.946 6.946 14 C -0.649 4.649 15 C -0.244 4.244 16 C -0.087 4.087 17 C -0.245 4.245 18 C 0.114 3.886 19 C -0.476 4.476 20 H 0.102 0.898 21 C -0.148 4.148 22 N -0.402 5.402 23 Si 0.736 3.264 24 H -0.182 1.182 25 H -0.195 1.195 26 H -0.198 1.198 27 C -0.186 4.186 28 C -0.100 4.100 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.227 0.773 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.096 0.904 42 H 0.141 0.859 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.035 16.462 -1.516 17.966 hybrid contribution -0.195 -0.259 0.254 0.412 sum -7.230 16.203 -1.261 17.788 Atomic orbital electron populations 1.21600 0.79054 1.04208 1.01968 1.57848 1.14873 1.20573 1.90014 1.22283 0.99053 0.84409 0.92905 0.85430 1.23565 1.02916 0.81243 0.96287 1.88444 1.90950 1.25962 1.23958 1.24059 1.01845 0.97502 0.82290 1.23832 0.95804 0.93669 0.87004 0.89905 1.86676 1.60393 1.66107 1.21395 1.07095 0.73864 0.72345 0.79577 1.93539 1.43686 1.82392 1.74641 1.93521 1.64769 1.61464 1.74827 1.28970 1.08419 1.05511 1.21998 1.18097 0.93155 0.90180 1.22995 1.20465 0.92703 0.97132 0.98403 1.20978 0.97955 0.92519 1.13037 1.17750 0.92083 0.92294 0.86514 1.19775 1.02718 0.90903 1.34172 0.89830 1.26038 0.94141 1.01882 0.92692 1.69839 1.18701 1.30569 1.21064 0.86185 0.80020 0.80479 0.79676 1.18202 1.19503 1.19755 1.21324 0.94465 0.96476 1.06379 1.20605 0.97604 0.92512 0.99289 0.92542 0.91207 0.89257 0.89790 0.89957 0.89206 0.90733 0.77299 0.86083 0.86260 0.88666 0.88277 0.90390 0.85923 0.88706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 9.54 59.85 0.57 1.34 16 2 N -1.00 -12.90 3.13 -112.54 -0.35 -13.26 16 3 C 0.12 1.42 3.11 -65.99 -0.21 1.22 16 4 H 0.13 1.69 6.94 -51.93 -0.36 1.33 16 5 C 0.04 0.37 7.43 37.88 0.28 0.65 16 6 O -0.37 -3.86 11.36 -35.23 -0.40 -4.26 16 7 C 0.02 0.17 7.52 38.18 0.29 0.46 16 8 C 0.06 0.57 4.01 -24.48 -0.10 0.48 16 9 H 0.08 0.70 6.07 -51.93 -0.32 0.39 16 10 O -0.54 -5.94 13.48 -35.23 -0.48 -6.42 16 11 S 2.57 45.63 5.40 -107.50 -0.58 45.05 16 12 O -0.95 -20.00 16.59 -57.54 -0.95 -20.96 16 13 O -0.96 -19.97 16.57 -57.54 -0.95 -20.93 16 14 C -0.52 -8.49 6.29 36.01 0.23 -8.26 16 15 C -0.24 -5.18 5.16 -104.33 -0.54 -5.72 16 16 C -0.07 -1.52 9.67 -39.66 -0.38 -1.90 16 17 C -0.22 -5.48 9.80 -38.87 -0.38 -5.86 16 18 C 0.12 3.07 5.58 -106.82 -0.60 2.48 16 19 C -0.45 -11.48 9.05 -37.74 -0.34 -11.82 16 20 H 0.08 2.04 7.91 -52.49 -0.42 1.63 16 21 C 0.07 1.76 5.14 -17.34 -0.09 1.67 16 22 N -0.78 -19.69 10.95 55.55 0.61 -19.08 16 23 Si 0.91 17.96 29.60 -169.99 -5.03 12.93 16 24 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 25 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 26 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 27 C -0.17 -4.29 8.70 -38.87 -0.34 -4.63 16 28 C -0.08 -1.88 9.67 -39.66 -0.38 -2.26 16 29 H 0.06 0.44 7.89 -51.93 -0.41 0.03 16 30 H 0.07 0.55 6.05 -51.93 -0.31 0.24 16 31 H 0.09 1.01 6.91 -51.93 -0.36 0.66 16 32 H 0.08 0.70 6.96 -51.93 -0.36 0.34 16 33 H 0.08 0.71 8.14 -51.92 -0.42 0.28 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.38 2.12 9.12 45.56 0.42 2.54 16 37 H 0.12 1.65 8.08 -51.92 -0.42 1.23 16 38 H 0.12 1.60 8.08 -51.92 -0.42 1.18 16 39 H 0.10 1.88 8.06 -52.48 -0.42 1.45 16 40 H 0.10 2.24 8.06 -52.48 -0.42 1.82 16 41 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 42 H 0.12 3.21 6.15 -52.49 -0.32 2.89 16 43 H 0.09 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 366.14 15.07 5.52 5.52 Total: -1.00 -34.30 366.14 -9.56 -43.86 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -4.95 Total: 9.70 kcal Atomic # 6 Polarization: -30.16 SS G_CDS: -1.99 Total: -32.15 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.26 Total: -32.34 kcal Atomic # 8 Polarization: -49.79 SS G_CDS: -2.78 Total: -52.57 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Atomic # 16 Polarization: 45.63 SS G_CDS: -0.58 Total: 45.05 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.30 -9.56 -43.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566972416.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.825 kcal (2) G-P(sol) polarization free energy of solvation -34.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds