Wall clock time and date at job start Sat Apr 11 2020 06:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47490 * 2 1 4 4 C 1.53002 * 109.46836 * 119.99748 * 2 1 3 5 5 N 1.46491 * 109.47610 * 294.25600 * 4 2 1 6 6 C 1.46502 * 119.99730 * 85.91988 * 5 4 2 7 7 S 1.65598 * 120.00491 * 265.92864 * 5 4 2 8 8 O 1.42095 * 104.28190 * 158.15173 * 7 5 4 9 9 O 1.42106 * 104.27467 * 30.29394 * 7 5 4 10 10 C 1.81403 * 104.44782 * 274.22627 * 7 5 4 11 11 C 1.50705 * 109.47209 * 175.28409 * 10 7 5 12 12 C 1.38629 * 119.74762 * 269.72849 * 11 10 7 13 13 C 1.37624 * 120.24650 * 179.71901 * 12 11 10 14 14 C 1.40710 * 119.74250 * 0.57355 * 13 12 11 15 15 C 1.41401 * 120.24346 * 179.68351 * 14 13 12 16 16 H 1.07999 * 119.99595 * 207.12197 * 15 14 13 17 17 C 1.39936 * 120.00143 * 27.11611 * 15 14 13 18 18 N 1.30828 * 119.99873 * 12.26557 * 17 15 14 19 19 Si 1.86801 * 120.00239 * 192.26904 * 17 15 14 20 20 H 1.48498 * 109.47104 * 59.99873 * 19 17 15 21 21 H 1.48497 * 109.47286 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46774 * 300.00004 * 19 17 15 23 23 C 1.40714 * 119.51487 * 359.69649 * 14 13 12 24 24 C 1.37625 * 119.74219 * 0.02562 * 23 14 13 25 25 C 1.50695 * 109.47257 * 239.99816 * 2 1 3 26 26 O 1.20829 * 120.00287 * 240.00487 * 25 2 1 27 27 O 1.34233 * 120.00262 * 59.99974 * 25 2 1 28 28 H 1.09006 * 109.46876 * 306.39745 * 1 2 3 29 29 H 1.08998 * 109.46970 * 66.38637 * 1 2 3 30 30 H 1.08994 * 109.47666 * 186.39550 * 1 2 3 31 31 H 1.09008 * 109.46947 * 174.25393 * 4 2 1 32 32 H 1.08999 * 109.46982 * 54.26119 * 4 2 1 33 33 H 1.08996 * 109.47703 * 270.00008 * 6 5 4 34 34 H 1.09004 * 109.47064 * 30.00786 * 6 5 4 35 35 H 1.09000 * 109.47022 * 150.00528 * 6 5 4 36 36 H 1.08999 * 109.47412 * 55.28289 * 10 7 5 37 37 H 1.09002 * 109.46629 * 295.28253 * 10 7 5 38 38 H 1.08002 * 119.87562 * 359.96885 * 12 11 10 39 39 H 1.07997 * 120.12847 * 180.27286 * 13 12 11 40 40 H 0.97001 * 120.00072 * 179.97438 * 18 17 15 41 41 H 1.07995 * 120.13101 * 179.97438 * 23 14 13 42 42 H 1.08000 * 119.87563 * 179.97438 * 24 23 14 43 43 H 0.96696 * 116.99993 * 180.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6678 0.0445 2.4414 6 6 0.3538 -0.1533 3.0584 7 16 2.7321 1.1339 3.0916 8 8 1.9127 2.0190 3.8428 9 8 3.4827 1.5980 1.9777 10 6 3.7769 0.1428 4.1947 11 6 4.8701 1.0097 4.7644 12 6 6.0813 1.1157 4.0984 13 6 7.0846 1.9091 4.6064 14 6 6.8816 2.6044 5.8127 15 6 7.9076 3.4172 6.3476 16 1 7.9591 3.5908 7.4123 17 6 8.8563 3.9964 5.4975 18 7 8.6649 3.9908 4.2033 19 14 10.3960 4.7777 6.2105 20 1 11.1661 3.7558 6.9641 21 1 11.2334 5.3164 5.1089 22 1 10.0121 5.8825 7.1256 23 6 5.6501 2.4849 6.4829 24 6 4.6589 1.6904 5.9535 25 6 2.0323 -0.7104 -1.2304 26 8 2.7269 -1.6929 -1.1195 27 8 1.7081 -0.2519 -2.4496 28 1 -0.3633 0.6098 0.8272 29 1 -0.3633 0.4116 -0.9416 30 1 -0.3634 -1.0212 0.1145 31 1 3.1251 -0.8112 1.1994 32 1 1.5951 -1.7149 1.3022 33 1 -0.3637 0.5367 2.6145 34 1 0.0241 -1.1786 2.8901 35 1 0.4235 0.0347 4.1298 36 1 4.2206 -0.6794 3.6333 37 1 3.1702 -0.2576 5.0070 38 1 6.2367 0.5769 3.1754 39 1 8.0259 1.9937 4.0837 40 1 9.3223 4.3927 3.6141 41 1 5.4837 3.0138 7.4097 42 1 3.7131 1.5967 6.4663 43 1 2.0536 -0.7411 -3.2088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582965304.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:23 Heat of formation + Delta-G solvation = -150.351071 kcal Electronic energy + Delta-G solvation = -27658.963770 eV Core-core repulsion = 23602.849819 eV Total energy + Delta-G solvation = -4056.113950 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.59264 -37.79870 -37.34672 -36.69738 -36.22892 -35.44567 -34.15003 -32.98973 -31.49688 -29.44827 -28.18750 -27.81765 -25.16389 -24.42076 -23.98886 -21.17031 -20.79431 -20.32033 -18.59327 -18.19568 -17.43584 -17.38153 -17.19346 -16.17438 -15.87757 -15.79151 -15.39725 -14.67349 -14.54560 -14.41869 -14.00551 -13.91056 -13.71787 -13.33797 -13.02457 -12.70521 -12.63805 -12.26285 -12.17825 -12.08583 -11.89492 -11.82343 -11.71802 -11.62371 -11.53017 -11.39006 -11.35018 -11.16420 -11.13828 -11.04333 -10.62535 -10.60626 -10.31181 -9.82467 -9.51622 -9.33497 -9.09691 -7.61986 -7.41686 -6.85827 -4.50516 0.53349 2.01558 2.62739 2.67996 2.94730 3.01418 3.03570 3.07068 3.10952 3.84013 4.19249 4.42862 4.44613 4.47030 4.52786 4.74564 4.90887 5.15952 5.23709 5.27050 5.32940 5.36403 5.43922 5.48841 5.53485 5.63090 5.75793 5.83398 5.97998 6.04860 6.18024 6.25278 6.27839 6.48503 6.82970 6.93402 7.09316 7.19380 7.46237 7.65258 7.67858 7.89122 7.91205 8.13537 8.48894 8.73404 8.80218 10.06587 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017858 B = 0.002784 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.529137 B =10055.544677 C =11036.146351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 H 0.123 0.877 4 C 0.142 3.858 5 N -1.010 6.010 6 C 0.091 3.909 7 S 2.571 3.429 8 O -0.960 6.960 9 O -0.954 6.954 10 C -0.520 4.520 11 C -0.234 4.234 12 C -0.081 4.081 13 C -0.161 4.161 14 C 0.117 3.883 15 C -0.449 4.449 16 H 0.082 0.918 17 C 0.071 3.929 18 N -0.785 5.785 19 Si 0.916 3.084 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.264 1.264 23 C -0.223 4.223 24 C -0.073 4.073 25 C 0.491 3.509 26 O -0.516 6.516 27 O -0.515 6.515 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.095 0.905 39 H 0.126 0.874 40 H 0.285 0.715 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.541 -9.567 -7.612 18.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 H 0.141 0.859 4 C 0.016 3.984 5 N -0.845 5.845 6 C -0.054 4.054 7 S 2.671 3.329 8 O -0.950 6.950 9 O -0.944 6.944 10 C -0.650 4.650 11 C -0.240 4.240 12 C -0.100 4.100 13 C -0.181 4.181 14 C 0.113 3.887 15 C -0.478 4.478 16 H 0.100 0.900 17 C -0.148 4.148 18 N -0.410 5.410 19 Si 0.740 3.260 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.188 1.188 23 C -0.243 4.243 24 C -0.092 4.092 25 C 0.333 3.667 26 O -0.404 6.404 27 O -0.326 6.326 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.113 0.887 39 H 0.144 0.856 40 H 0.096 0.904 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -13.519 -8.649 -7.730 17.813 hybrid contribution 1.029 -0.520 -0.141 1.162 sum -12.490 -9.169 -7.871 17.378 Atomic orbital electron populations 1.21898 0.91706 1.02938 1.03805 1.21596 0.98868 1.02738 0.89746 0.85939 1.21043 1.01285 0.94312 0.81788 1.57914 1.28112 1.60675 1.37809 1.21557 0.83910 1.01807 0.98125 1.07024 0.74429 0.75621 0.75788 1.93524 1.66577 1.61431 1.73466 1.93543 1.72334 1.78379 1.50184 1.28962 1.10964 1.11259 1.13859 1.18131 0.95346 1.09487 1.01015 1.20624 0.93144 0.98585 0.97691 1.21396 0.99252 0.98405 0.99056 1.17754 0.90893 0.88860 0.91160 1.19699 1.08070 1.24821 0.95256 0.90027 1.26011 0.99219 0.95024 0.94572 1.69790 1.33827 1.33375 1.04018 0.86238 0.80424 0.79862 0.79493 1.18720 1.20157 1.18847 1.21017 0.94332 1.05955 1.02963 1.20479 0.97683 0.96557 0.94496 1.23358 0.76576 0.82099 0.84697 1.90724 1.35925 1.26430 1.87333 1.84535 1.72201 1.59055 1.16850 0.90314 0.91241 0.92013 0.89058 0.89472 0.92419 0.91212 0.90811 0.86073 0.86114 0.88689 0.85644 0.90387 0.88268 0.88643 0.73213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.49 37.16 0.32 -0.88 16 2 C -0.11 -1.19 3.01 -91.77 -0.28 -1.46 16 3 H 0.12 1.54 7.64 -51.93 -0.40 1.14 16 4 C 0.14 1.59 4.13 -4.05 -0.02 1.57 16 5 N -1.01 -12.11 3.03 -121.76 -0.37 -12.48 16 6 C 0.09 0.83 9.12 59.85 0.55 1.38 16 7 S 2.57 43.49 5.30 -107.50 -0.57 42.92 16 8 O -0.96 -18.71 16.93 -57.54 -0.97 -19.69 16 9 O -0.95 -19.21 16.66 -57.54 -0.96 -20.17 16 10 C -0.52 -8.46 6.30 36.01 0.23 -8.23 16 11 C -0.23 -5.06 5.16 -104.33 -0.54 -5.60 16 12 C -0.08 -1.89 9.67 -39.66 -0.38 -2.27 16 13 C -0.16 -4.16 8.67 -38.87 -0.34 -4.50 16 14 C 0.12 3.07 5.56 -106.82 -0.59 2.47 16 15 C -0.45 -11.57 9.07 -37.74 -0.34 -11.91 16 16 H 0.08 1.99 7.88 -52.49 -0.41 1.57 16 17 C 0.07 1.73 5.24 -17.34 -0.09 1.64 16 18 N -0.79 -20.02 10.81 55.55 0.60 -19.42 16 19 Si 0.92 18.15 29.58 -169.99 -5.03 13.12 16 20 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 21 H -0.28 -5.36 7.11 56.52 0.40 -4.95 16 22 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 23 C -0.22 -5.40 9.80 -38.87 -0.38 -5.78 16 24 C -0.07 -1.62 9.67 -39.66 -0.38 -2.00 16 25 C 0.49 5.49 7.63 36.00 0.27 5.77 16 26 O -0.52 -7.04 16.66 -18.75 -0.31 -7.35 16 27 O -0.51 -4.45 13.21 -39.27 -0.52 -4.97 16 28 H 0.08 0.64 5.64 -51.93 -0.29 0.34 16 29 H 0.07 0.53 7.96 -51.93 -0.41 0.11 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 1.12 7.55 -51.92 -0.39 0.72 16 32 H 0.09 0.77 7.95 -51.93 -0.41 0.36 16 33 H 0.06 0.49 6.35 -51.93 -0.33 0.16 16 34 H 0.07 0.44 7.93 -51.93 -0.41 0.03 16 35 H 0.07 0.67 7.67 -51.93 -0.40 0.27 16 36 H 0.12 1.68 8.08 -51.92 -0.42 1.26 16 37 H 0.12 1.62 8.08 -51.92 -0.42 1.20 16 38 H 0.09 2.01 8.06 -52.49 -0.42 1.59 16 39 H 0.13 3.31 6.15 -52.49 -0.32 2.98 16 40 H 0.28 6.60 8.30 -40.82 -0.34 6.27 16 41 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 42 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 43 H 0.41 1.77 9.10 45.56 0.41 2.19 16 LS Contribution 373.60 15.07 5.63 5.63 Total: -1.00 -33.74 373.60 -9.51 -43.25 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -5.03 Total: 8.97 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: -1.98 Total: -29.83 kcal Atomic # 7 Polarization: -32.13 SS G_CDS: 0.23 Total: -31.90 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -2.76 Total: -52.18 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.12 kcal Atomic # 16 Polarization: 43.49 SS G_CDS: -0.57 Total: 42.92 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.74 -9.51 -43.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582965304.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.101 kcal (2) G-P(sol) polarization free energy of solvation -33.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds