Wall clock time and date at job start Sat Apr 11 2020 06:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47490 * 2 1 4 4 C 1.53002 * 109.46836 * 119.99748 * 2 1 3 5 5 N 1.46491 * 109.47610 * 294.25600 * 4 2 1 6 6 C 1.46502 * 119.99730 * 85.91988 * 5 4 2 7 7 S 1.65598 * 120.00491 * 265.92864 * 5 4 2 8 8 O 1.42095 * 104.28190 * 158.15173 * 7 5 4 9 9 O 1.42106 * 104.27467 * 30.29394 * 7 5 4 10 10 C 1.81403 * 104.44782 * 274.22627 * 7 5 4 11 11 C 1.50705 * 109.47209 * 175.28409 * 10 7 5 12 12 C 1.38629 * 119.74762 * 269.72849 * 11 10 7 13 13 C 1.37624 * 120.24650 * 179.71901 * 12 11 10 14 14 C 1.40710 * 119.74250 * 0.57355 * 13 12 11 15 15 C 1.41401 * 120.24346 * 179.68351 * 14 13 12 16 16 H 1.07999 * 119.99595 * 207.12197 * 15 14 13 17 17 C 1.39936 * 120.00143 * 27.11611 * 15 14 13 18 18 N 1.30828 * 119.99873 * 12.26557 * 17 15 14 19 19 Si 1.86801 * 120.00239 * 192.26904 * 17 15 14 20 20 H 1.48498 * 109.47104 * 59.99873 * 19 17 15 21 21 H 1.48497 * 109.47286 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46774 * 300.00004 * 19 17 15 23 23 C 1.40714 * 119.51487 * 359.69649 * 14 13 12 24 24 C 1.37625 * 119.74219 * 0.02562 * 23 14 13 25 25 C 1.50695 * 109.47257 * 239.99816 * 2 1 3 26 26 O 1.20829 * 120.00287 * 240.00487 * 25 2 1 27 27 O 1.34233 * 120.00262 * 59.99974 * 25 2 1 28 28 H 1.09006 * 109.46876 * 306.39745 * 1 2 3 29 29 H 1.08998 * 109.46970 * 66.38637 * 1 2 3 30 30 H 1.08994 * 109.47666 * 186.39550 * 1 2 3 31 31 H 1.09008 * 109.46947 * 174.25393 * 4 2 1 32 32 H 1.08999 * 109.46982 * 54.26119 * 4 2 1 33 33 H 1.08996 * 109.47703 * 270.00008 * 6 5 4 34 34 H 1.09004 * 109.47064 * 30.00786 * 6 5 4 35 35 H 1.09000 * 109.47022 * 150.00528 * 6 5 4 36 36 H 1.08999 * 109.47412 * 55.28289 * 10 7 5 37 37 H 1.09002 * 109.46629 * 295.28253 * 10 7 5 38 38 H 1.08002 * 119.87562 * 359.96885 * 12 11 10 39 39 H 1.07997 * 120.12847 * 180.27286 * 13 12 11 40 40 H 0.97001 * 120.00072 * 179.97438 * 18 17 15 41 41 H 1.07995 * 120.13101 * 179.97438 * 23 14 13 42 42 H 1.08000 * 119.87563 * 179.97438 * 24 23 14 43 43 H 0.96696 * 116.99993 * 180.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6678 0.0445 2.4414 6 6 0.3538 -0.1533 3.0584 7 16 2.7321 1.1339 3.0916 8 8 1.9127 2.0190 3.8428 9 8 3.4827 1.5980 1.9777 10 6 3.7769 0.1428 4.1947 11 6 4.8701 1.0097 4.7644 12 6 6.0813 1.1157 4.0984 13 6 7.0846 1.9091 4.6064 14 6 6.8816 2.6044 5.8127 15 6 7.9076 3.4172 6.3476 16 1 7.9591 3.5908 7.4123 17 6 8.8563 3.9964 5.4975 18 7 8.6649 3.9908 4.2033 19 14 10.3960 4.7777 6.2105 20 1 11.1661 3.7558 6.9641 21 1 11.2334 5.3164 5.1089 22 1 10.0121 5.8825 7.1256 23 6 5.6501 2.4849 6.4829 24 6 4.6589 1.6904 5.9535 25 6 2.0323 -0.7104 -1.2304 26 8 2.7269 -1.6929 -1.1195 27 8 1.7081 -0.2519 -2.4496 28 1 -0.3633 0.6098 0.8272 29 1 -0.3633 0.4116 -0.9416 30 1 -0.3634 -1.0212 0.1145 31 1 3.1251 -0.8112 1.1994 32 1 1.5951 -1.7149 1.3022 33 1 -0.3637 0.5367 2.6145 34 1 0.0241 -1.1786 2.8901 35 1 0.4235 0.0347 4.1298 36 1 4.2206 -0.6794 3.6333 37 1 3.1702 -0.2576 5.0070 38 1 6.2367 0.5769 3.1754 39 1 8.0259 1.9937 4.0837 40 1 9.3223 4.3927 3.6141 41 1 5.4837 3.0138 7.4097 42 1 3.7131 1.5967 6.4663 43 1 2.0536 -0.7411 -3.2088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582965304.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:22 Heat of formation + Delta-G solvation = -173.987650 kcal Electronic energy + Delta-G solvation = -27659.988728 eV Core-core repulsion = 23602.849819 eV Total energy + Delta-G solvation = -4057.138909 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.43473 -39.60488 -38.29624 -38.07246 -37.07503 -36.89210 -35.94013 -33.82398 -33.20744 -31.29778 -29.55018 -28.89954 -26.12060 -25.81736 -25.04939 -23.02440 -22.11301 -21.61668 -19.79577 -19.29738 -19.08131 -18.53580 -18.09146 -17.45688 -17.27588 -16.93126 -16.73254 -16.06110 -15.73550 -15.69349 -15.49456 -15.33329 -14.74620 -14.37662 -14.13714 -13.92190 -13.88879 -13.72503 -13.55013 -13.46836 -13.10919 -13.07387 -13.02138 -12.99223 -12.78859 -12.76804 -12.54561 -12.47922 -12.27232 -12.22211 -12.09515 -11.90012 -11.56571 -11.47754 -11.35772 -11.06894 -10.10258 -9.48510 -9.24321 -8.66957 -6.43230 -0.80087 0.86975 1.04898 1.16326 1.37487 1.49573 1.51588 1.66730 2.17545 2.18317 2.65045 2.90707 3.17403 3.58766 3.62661 3.64476 3.80376 3.98235 4.03795 4.17144 4.41658 4.43156 4.49694 4.58437 4.65347 4.67953 4.76305 4.86264 4.93801 4.98222 5.02494 5.05811 5.08238 5.24548 5.33764 5.34797 5.55404 5.60290 5.61078 5.81598 6.01131 6.03603 6.27430 6.60344 6.84938 6.92055 6.96339 8.28451 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017858 B = 0.002784 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.529137 B =10055.544677 C =11036.146351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 H 0.101 0.899 4 C 0.136 3.864 5 N -0.996 5.996 6 C 0.077 3.923 7 S 2.591 3.409 8 O -0.987 6.987 9 O -0.994 6.994 10 C -0.526 4.526 11 C -0.229 4.229 12 C -0.093 4.093 13 C -0.189 4.189 14 C 0.083 3.917 15 C -0.489 4.489 16 H 0.083 0.917 17 C 0.029 3.971 18 N -0.826 5.826 19 Si 0.990 3.010 20 H -0.257 1.257 21 H -0.268 1.268 22 H -0.258 1.258 23 C -0.241 4.241 24 C -0.081 4.081 25 C 0.496 3.504 26 O -0.545 6.545 27 O -0.511 6.511 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.076 0.924 36 H 0.149 0.851 37 H 0.158 0.842 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.290 0.710 41 H 0.108 0.892 42 H 0.128 0.872 43 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.780 -11.252 -7.849 20.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.136 4.136 3 H 0.119 0.881 4 C 0.010 3.990 5 N -0.833 5.833 6 C -0.067 4.067 7 S 2.690 3.310 8 O -0.977 6.977 9 O -0.984 6.984 10 C -0.657 4.657 11 C -0.233 4.233 12 C -0.113 4.113 13 C -0.208 4.208 14 C 0.080 3.920 15 C -0.519 4.519 16 H 0.102 0.898 17 C -0.186 4.186 18 N -0.451 5.451 19 Si 0.810 3.190 20 H -0.181 1.181 21 H -0.193 1.193 22 H -0.182 1.182 23 C -0.260 4.260 24 C -0.100 4.100 25 C 0.339 3.661 26 O -0.435 6.435 27 O -0.324 6.324 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.138 0.862 33 H 0.083 0.917 34 H 0.126 0.874 35 H 0.095 0.905 36 H 0.167 0.833 37 H 0.176 0.824 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.101 0.899 41 H 0.126 0.874 42 H 0.146 0.854 43 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -15.747 -10.317 -7.961 20.440 hybrid contribution 1.437 -0.168 -0.224 1.464 sum -14.310 -10.485 -8.184 19.537 Atomic orbital electron populations 1.21912 0.89393 1.04353 1.04226 1.21623 1.00843 1.01344 0.89762 0.88138 1.21239 1.00927 0.95542 0.81272 1.57381 1.28240 1.59884 1.37839 1.21940 0.82111 1.04457 0.98158 1.05821 0.74354 0.75692 0.75085 1.93493 1.67166 1.62932 1.74156 1.93506 1.73718 1.79637 1.51506 1.29057 1.09946 1.11227 1.15423 1.18567 0.95937 1.08544 1.00232 1.20927 0.93605 0.98316 0.98414 1.21395 0.99613 1.00106 0.99735 1.18111 0.92151 0.89751 0.91954 1.19953 1.09743 1.26510 0.95674 0.89849 1.26902 1.01975 0.95058 0.94670 1.69866 1.35132 1.34783 1.05357 0.85129 0.76137 0.78912 0.78797 1.18127 1.19272 1.18224 1.21278 0.94399 1.06842 1.03528 1.20896 0.98418 0.95826 0.94896 1.23369 0.75867 0.81513 0.85384 1.90715 1.37198 1.27777 1.87830 1.84492 1.71881 1.59113 1.16936 0.90099 0.90791 0.89964 0.90493 0.86249 0.91712 0.87422 0.90539 0.83299 0.82366 0.87082 0.87401 0.89912 0.87401 0.85400 0.70987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 8.49 71.98 0.61 -1.27 16 2 C -0.11 -2.28 3.01 -11.54 -0.03 -2.32 16 3 H 0.10 2.47 7.64 -2.39 -0.02 2.45 16 4 C 0.14 2.66 4.13 86.38 0.36 3.02 16 5 N -1.00 -20.82 3.03 -539.13 -1.63 -22.45 16 6 C 0.08 1.09 9.12 127.77 1.17 2.25 16 7 S 2.59 83.09 5.30 -56.49 -0.30 82.79 16 8 O -0.99 -36.88 16.93 -127.65 -2.16 -39.04 16 9 O -0.99 -39.80 16.66 -127.65 -2.13 -41.93 16 10 C -0.53 -15.63 6.30 71.24 0.45 -15.18 16 11 C -0.23 -9.66 5.16 -19.68 -0.10 -9.77 16 12 C -0.09 -4.44 9.67 22.22 0.21 -4.22 16 13 C -0.19 -10.23 8.67 22.73 0.20 -10.03 16 14 C 0.08 4.58 5.56 -21.29 -0.12 4.46 16 15 C -0.49 -26.47 9.07 23.46 0.21 -26.26 16 16 H 0.08 4.26 7.88 -2.91 -0.02 4.24 16 17 C 0.03 1.47 5.24 85.25 0.45 1.91 16 18 N -0.83 -44.19 10.81 21.82 0.24 -43.96 16 19 Si 0.99 38.23 29.58 68.60 2.03 40.26 16 20 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 21 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 22 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 23 C -0.24 -11.95 9.80 22.73 0.22 -11.73 16 24 C -0.08 -3.56 9.67 22.22 0.21 -3.35 16 25 C 0.50 10.24 7.63 71.23 0.54 10.79 16 26 O -0.54 -14.02 16.66 21.96 0.37 -13.66 16 27 O -0.51 -7.87 13.21 -51.45 -0.68 -8.55 16 28 H 0.08 1.05 5.64 -2.38 -0.01 1.03 16 29 H 0.07 0.92 7.96 -2.39 -0.02 0.90 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.08 1.75 7.55 -2.38 -0.02 1.73 16 32 H 0.12 1.60 7.95 -2.39 -0.02 1.58 16 33 H 0.06 0.86 6.35 -2.39 -0.02 0.84 16 34 H 0.11 0.75 7.93 -2.39 -0.02 0.73 16 35 H 0.08 1.08 7.67 -2.39 -0.02 1.06 16 36 H 0.15 3.64 8.08 -2.39 -0.02 3.62 16 37 H 0.16 3.54 8.08 -2.39 -0.02 3.53 16 38 H 0.11 4.76 8.06 -2.91 -0.02 4.73 16 39 H 0.11 6.09 6.15 -2.91 -0.02 6.07 16 40 H 0.29 14.07 8.30 -92.71 -0.77 13.30 16 41 H 0.11 4.97 8.06 -2.91 -0.02 4.94 16 42 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 43 H 0.43 2.85 9.10 -74.06 -0.67 2.18 16 Total: -1.00 -77.29 373.60 0.48 -76.82 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: 0.37 Total: 31.40 kcal Atomic # 6 Polarization: -66.06 SS G_CDS: 4.38 Total: -61.68 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: -1.40 Total: -66.41 kcal Atomic # 8 Polarization: -98.57 SS G_CDS: -4.60 Total: -103.17 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 2.03 Total: 40.26 kcal Atomic # 16 Polarization: 83.09 SS G_CDS: -0.30 Total: 82.79 kcal Total: -77.29 0.48 -76.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582965304.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.171 kcal (2) G-P(sol) polarization free energy of solvation -77.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds