Wall clock time and date at job start Sat Apr 11 2020 06:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47322 * 2 1 4 4 O 1.45197 * 109.47298 * 120.00617 * 2 1 3 5 5 C 1.34230 * 117.00417 * 89.99849 * 4 2 1 6 6 O 1.20833 * 119.99435 * 0.02562 * 5 4 2 7 7 C 1.50691 * 120.00281 * 179.97438 * 5 4 2 8 8 H 1.09009 * 109.46910 * 60.00077 * 7 5 4 9 9 C 1.52998 * 109.47449 * 300.00286 * 7 5 4 10 10 N 1.46496 * 109.47302 * 179.97438 * 7 5 4 11 11 S 1.65600 * 120.00572 * 215.00031 * 10 7 5 12 12 O 1.42097 * 106.40227 * 311.46495 * 11 10 7 13 13 O 1.42098 * 106.40314 * 178.53832 * 11 10 7 14 14 C 1.76200 * 107.21533 * 65.00321 * 11 10 7 15 15 C 1.38657 * 119.87534 * 269.97735 * 14 11 10 16 16 C 1.38611 * 120.50450 * 180.02562 * 15 14 11 17 17 C 1.37644 * 120.24502 * 0.02562 * 16 15 14 18 18 C 1.40691 * 119.74527 * 359.97438 * 17 16 15 19 19 C 1.41396 * 120.24245 * 180.02562 * 18 17 16 20 20 H 1.08009 * 119.99598 * 150.21707 * 19 18 17 21 21 C 1.39943 * 120.00268 * 330.22360 * 19 18 17 22 22 N 1.30825 * 119.99976 * 161.72740 * 21 19 18 23 23 Si 1.86793 * 119.99780 * 341.72399 * 21 19 18 24 24 H 1.48503 * 109.47344 * 95.41200 * 23 21 19 25 25 H 1.48503 * 109.46947 * 215.41231 * 23 21 19 26 26 H 1.48503 * 109.47306 * 335.41258 * 23 21 19 27 27 C 1.37596 * 119.87915 * 90.00065 * 14 11 10 28 28 H 1.09000 * 109.47313 * 299.99549 * 1 2 3 29 29 H 1.09001 * 109.47331 * 59.99626 * 1 2 3 30 30 H 1.09000 * 109.47432 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46965 * 240.00509 * 2 1 3 32 32 H 1.08994 * 109.47513 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47607 * 300.00564 * 3 2 1 34 34 H 1.09007 * 109.46685 * 60.00338 * 3 2 1 35 35 H 1.08994 * 109.47375 * 180.02562 * 9 7 5 36 36 H 1.09000 * 109.46687 * 299.99971 * 9 7 5 37 37 H 1.08996 * 109.47319 * 59.99646 * 9 7 5 38 38 H 0.97008 * 119.99776 * 35.00583 * 10 7 5 39 39 H 1.08003 * 119.74856 * 0.02562 * 15 14 11 40 40 H 1.08002 * 119.87783 * 179.97438 * 16 15 14 41 41 H 1.07997 * 120.12108 * 180.02562 * 17 16 15 42 42 H 0.97000 * 119.99656 * 180.02562 * 22 21 19 43 43 H 1.08001 * 120.12593 * 0.25677 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0140 -0.6846 1.1854 5 6 2.2171 -2.0076 1.0850 6 8 1.9981 -2.5748 0.0407 7 6 2.7193 -2.7853 2.2740 8 1 2.0105 -2.6894 3.0965 9 6 4.0796 -2.2343 2.7063 10 7 2.8571 -4.1978 1.9109 11 16 2.5358 -5.3757 3.0297 12 8 3.2352 -5.0086 4.2109 13 8 2.7254 -6.6193 2.3689 14 6 0.8196 -5.2740 3.4157 15 6 0.3921 -4.4597 4.4534 16 6 -0.9547 -4.3704 4.7686 17 6 -1.8836 -5.0914 4.0531 18 6 -1.4613 -5.9209 2.9980 19 6 -2.4065 -6.6658 2.2557 20 1 -2.2150 -6.9006 1.2190 21 6 -3.5901 -7.0986 2.8642 22 7 -4.6090 -7.4619 2.1283 23 14 -3.7151 -7.1577 4.7270 24 1 -4.3463 -5.9075 5.2207 25 1 -4.5424 -8.3229 5.1309 26 1 -2.3558 -7.2897 5.3104 27 6 -0.0914 -6.0033 2.6866 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1299 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 4.4431 -2.7971 3.5660 36 1 4.7884 -2.3301 1.8837 37 1 3.9767 -1.1834 2.9766 38 1 3.1366 -4.4433 1.0149 39 1 1.1141 -3.8908 5.0204 40 1 -1.2764 -3.7333 5.5792 41 1 -2.9325 -5.0199 4.3001 42 1 -5.4294 -7.7615 2.5501 43 1 0.2442 -6.6404 1.8817 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590764211.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:32 Heat of formation + Delta-G solvation = -151.084815 kcal Electronic energy + Delta-G solvation = -28216.669823 eV Core-core repulsion = 24160.524055 eV Total energy + Delta-G solvation = -4056.145768 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.76853 -37.97862 -37.39537 -36.85002 -35.57911 -35.45335 -33.82510 -33.34143 -30.78516 -30.22369 -30.03280 -27.51696 -25.45566 -25.12843 -22.46269 -22.12497 -20.98346 -20.64393 -19.54191 -18.37970 -17.77569 -17.27985 -16.85695 -16.36286 -16.14511 -15.47920 -15.34226 -14.96145 -14.64738 -14.46666 -14.07196 -13.87469 -13.53202 -13.23649 -13.10083 -12.91438 -12.60836 -12.54466 -12.50276 -12.29762 -12.00824 -11.94690 -11.79283 -11.76106 -11.74673 -11.64921 -11.53755 -11.13542 -11.08473 -10.83481 -10.73500 -10.53939 -10.37969 -10.08026 -9.88539 -9.61603 -9.26620 -8.33500 -7.92771 -7.12147 -4.67797 0.75122 1.84365 2.08309 2.36892 2.41338 2.96487 3.09109 3.17752 3.30525 3.82456 4.01945 4.23529 4.39155 4.55117 4.67247 4.71759 4.77420 4.86581 4.90226 5.09269 5.24515 5.29102 5.44943 5.50897 5.55052 5.60252 5.75505 5.76429 5.83096 5.94350 5.99427 6.02760 6.15859 6.34092 6.41770 6.51887 6.81741 6.94067 7.04505 7.14483 7.33490 7.57905 7.63031 7.73028 8.14752 8.38328 8.57491 9.89560 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011254 B = 0.004046 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.481977 B = 6918.564697 C = 8318.403117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.080 3.920 3 C -0.148 4.148 4 O -0.349 6.349 5 C 0.461 3.539 6 O -0.494 6.494 7 C 0.167 3.833 8 H 0.127 0.873 9 C -0.166 4.166 10 N -1.105 6.105 11 S 2.690 3.310 12 O -0.964 6.964 13 O -0.960 6.960 14 C -0.629 4.629 15 C -0.166 4.166 16 C -0.090 4.090 17 C -0.198 4.198 18 C 0.073 3.927 19 C -0.441 4.441 20 H 0.096 0.904 21 C 0.084 3.916 22 N -0.798 5.798 23 Si 0.907 3.093 24 H -0.268 1.268 25 H -0.286 1.286 26 H -0.243 1.243 27 C -0.098 4.098 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.423 0.577 39 H 0.113 0.887 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.288 0.712 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.912 14.965 -0.751 18.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.025 3.975 3 C -0.206 4.206 4 O -0.266 6.266 5 C 0.301 3.699 6 O -0.380 6.380 7 C 0.057 3.943 8 H 0.144 0.856 9 C -0.225 4.225 10 N -0.864 5.864 11 S 2.785 3.215 12 O -0.954 6.954 13 O -0.951 6.951 14 C -0.720 4.720 15 C -0.187 4.187 16 C -0.109 4.109 17 C -0.218 4.218 18 C 0.069 3.931 19 C -0.469 4.469 20 H 0.114 0.886 21 C -0.137 4.137 22 N -0.421 5.421 23 Si 0.733 3.267 24 H -0.194 1.194 25 H -0.213 1.213 26 H -0.166 1.166 27 C -0.119 4.119 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.259 0.741 39 H 0.131 0.869 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.099 0.901 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.151 14.168 -0.688 18.043 hybrid contribution -1.209 0.037 0.083 1.213 sum 9.942 14.205 -0.605 17.349 Atomic orbital electron populations 1.22231 0.93997 1.03694 1.03108 1.22771 0.94907 0.92910 0.86907 1.21888 1.01962 0.93472 1.03236 1.86543 1.76916 1.21799 1.41348 1.23780 0.74385 0.81541 0.90206 1.90670 1.47085 1.69803 1.30394 1.20180 0.99961 0.80564 0.93595 0.85583 1.22296 0.94328 1.02533 1.03369 1.55703 1.84877 1.15800 1.30032 1.01813 0.74868 0.72139 0.72674 1.93534 1.71996 1.83407 1.46478 1.93575 1.86436 1.39857 1.75188 1.29927 1.22389 1.11075 1.08635 1.20071 0.95920 1.03335 0.99345 1.20701 0.93233 0.98656 0.98322 1.21305 0.98170 1.00893 1.01421 1.17791 0.92020 0.91652 0.91611 1.19548 0.99147 1.28426 0.99788 0.88616 1.26173 0.93856 0.92093 1.01538 1.69680 1.02633 1.30646 1.39138 0.86363 0.80560 0.77756 0.82058 1.19389 1.21257 1.16577 1.20874 0.92622 0.98666 0.99735 0.91346 0.90715 0.91497 0.89700 0.91726 0.90398 0.91263 0.89164 0.91570 0.90016 0.74118 0.86896 0.87789 0.87575 0.90121 0.86156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 9.55 37.15 0.35 -1.40 16 2 C 0.08 0.81 3.18 -26.73 -0.09 0.72 16 3 C -0.15 -1.04 9.57 37.16 0.36 -0.68 16 4 O -0.35 -4.11 9.78 -39.26 -0.38 -4.50 16 5 C 0.46 6.21 7.29 36.00 0.26 6.47 16 6 O -0.49 -7.88 15.21 -18.76 -0.29 -8.16 16 7 C 0.17 2.09 3.29 -69.09 -0.23 1.86 16 8 H 0.13 1.52 7.22 -51.92 -0.38 1.15 16 9 C -0.17 -1.63 9.45 37.16 0.35 -1.27 16 10 N -1.11 -15.66 5.26 -5.89 -0.03 -15.69 16 11 S 2.69 47.05 5.65 -107.50 -0.61 46.44 16 12 O -0.96 -17.39 16.53 -57.17 -0.94 -18.34 16 13 O -0.96 -19.37 17.26 -57.17 -0.99 -20.35 16 14 C -0.63 -12.82 5.81 -39.66 -0.23 -13.05 16 15 C -0.17 -3.23 8.90 -39.29 -0.35 -3.58 16 16 C -0.09 -1.83 10.02 -39.66 -0.40 -2.22 16 17 C -0.20 -4.56 7.18 -38.87 -0.28 -4.84 16 18 C 0.07 1.82 5.10 -106.83 -0.55 1.27 16 19 C -0.44 -11.64 9.57 -37.74 -0.36 -12.00 16 20 H 0.10 2.64 8.06 -52.48 -0.42 2.21 16 21 C 0.08 2.13 5.40 -17.34 -0.09 2.03 16 22 N -0.80 -20.61 13.93 55.55 0.77 -19.84 16 23 Si 0.91 20.03 24.52 -169.99 -4.17 15.86 16 24 H -0.27 -5.64 6.71 56.52 0.38 -5.26 16 25 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.24 -5.53 6.86 56.52 0.39 -5.14 16 27 C -0.10 -2.26 9.26 -38.87 -0.36 -2.62 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 0.92 7.16 -51.92 -0.37 0.55 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 35 H 0.09 0.93 7.64 -51.93 -0.40 0.53 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.65 8.11 -51.93 -0.42 0.22 16 38 H 0.42 5.54 8.21 -34.47 -0.28 5.26 16 39 H 0.11 1.88 7.60 -52.48 -0.40 1.48 16 40 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.11 2.40 4.73 -52.49 -0.25 2.15 16 42 H 0.29 6.71 8.30 -40.82 -0.34 6.37 16 43 H 0.12 2.70 7.60 -52.49 -0.40 2.30 16 LS Contribution 372.09 15.07 5.61 5.61 Total: -1.00 -31.28 372.09 -8.50 -39.78 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -5.87 Total: 8.50 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: -1.60 Total: -29.31 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.74 Total: -35.53 kcal Atomic # 8 Polarization: -48.75 SS G_CDS: -2.60 Total: -51.35 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.17 Total: 15.86 kcal Atomic # 16 Polarization: 47.05 SS G_CDS: -0.61 Total: 46.44 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.28 -8.50 -39.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590764211.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.308 kcal (2) G-P(sol) polarization free energy of solvation -31.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds