Wall clock time and date at job start Sat Apr 11 2020 06:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42906 * 109.47167 * 2 1 4 4 C 1.35901 * 117.00136 * 179.97438 * 3 2 1 5 5 C 1.38730 * 120.05197 * 180.02562 * 4 3 2 6 6 C 1.38147 * 119.93902 * 179.97438 * 5 4 3 7 7 C 1.38264 * 120.05724 * 359.97438 * 6 5 4 8 8 S 1.76198 * 119.94536 * 180.02562 * 7 6 5 9 9 O 1.42100 * 106.40217 * 336.46291 * 8 7 6 10 10 O 1.42093 * 106.40547 * 203.53963 * 8 7 6 11 11 N 1.65611 * 107.21840 * 90.00157 * 8 7 6 12 12 C 1.47020 * 125.64872 * 269.96136 * 11 8 7 13 13 C 1.54316 * 107.27114 * 181.09041 * 12 11 8 14 14 C 1.55154 * 102.94177 * 22.19612 * 13 12 11 15 15 O 1.42897 * 111.04197 * 82.58299 * 14 13 12 16 16 C 1.50706 * 111.00479 * 206.42410 * 14 13 12 17 17 H 1.07995 * 120.00167 * 111.91520 * 16 14 13 18 18 C 1.37879 * 119.99394 * 292.19219 * 16 14 13 19 19 N 1.31514 * 120.00338 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99424 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47474 * 90.00322 * 20 18 16 22 22 H 1.48507 * 109.46754 * 210.00056 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99887 * 20 18 16 24 24 C 1.47426 * 125.64506 * 89.99795 * 11 8 7 25 25 C 1.38266 * 120.11003 * 0.27778 * 7 6 5 26 26 C 1.38142 * 120.05832 * 359.44772 * 25 7 6 27 27 H 1.09006 * 109.47146 * 60.00283 * 1 2 3 28 28 H 1.08995 * 109.47318 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47717 * 300.00215 * 1 2 3 30 30 H 1.08994 * 109.47436 * 239.99932 * 2 1 3 31 31 H 1.09006 * 109.47146 * 119.99717 * 2 1 3 32 32 H 1.07995 * 120.03384 * 359.95031 * 5 4 3 33 33 H 1.08000 * 119.97094 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.88246 * 300.51442 * 12 11 8 35 35 H 1.09005 * 109.88381 * 61.51771 * 12 11 8 36 36 H 1.08996 * 110.72266 * 263.82567 * 13 12 11 37 37 H 1.09004 * 110.71712 * 140.55438 * 13 12 11 38 38 H 0.96698 * 113.99943 * 64.60268 * 15 14 13 39 39 H 0.96996 * 119.99730 * 179.97438 * 19 18 16 40 40 H 1.08998 * 110.36567 * 37.00477 * 24 11 8 41 41 H 1.08998 * 110.36776 * 274.67626 * 24 11 8 42 42 H 1.08010 * 119.97047 * 179.70352 * 25 7 6 43 43 H 1.07993 * 120.03196 * 180.27502 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 3.8850 2.8069 0.0011 6 6 5.2549 2.9852 0.0022 7 6 6.0961 1.8879 0.0032 8 16 7.8429 2.1188 0.0053 9 8 8.0776 3.4103 -0.5388 10 8 8.4051 0.9325 -0.5384 11 7 8.3270 2.1830 1.5878 12 6 8.4217 3.4008 2.4061 13 6 8.9398 2.9789 3.7971 14 6 9.6458 1.6275 3.5098 15 8 10.9721 1.8354 3.0203 16 6 9.6569 0.7523 4.7366 17 1 9.0711 -0.1547 4.7582 18 6 10.4105 1.1126 5.8335 19 7 11.1193 2.2201 5.8094 20 14 10.4249 0.0274 7.3539 21 1 11.5197 -0.9695 7.2403 22 1 10.6431 0.8670 8.5593 23 1 9.1234 -0.6780 7.4710 24 6 8.7351 1.0287 2.4089 25 6 5.5689 0.6098 -0.0026 26 6 4.1997 0.4260 0.0021 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.2284 3.6643 0.0003 33 1 5.6691 3.9826 0.0031 34 1 9.1190 4.1021 1.9478 35 1 7.4388 3.8628 2.4984 36 1 8.1112 2.8412 4.4918 37 1 9.6499 3.7107 4.1824 38 1 11.5658 2.2537 3.6586 39 1 11.6491 2.4737 6.5813 40 1 9.2912 0.3114 1.8053 41 1 7.8619 0.5534 2.8559 42 1 6.2281 -0.2458 -0.0066 43 1 3.7884 -0.5725 0.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592072677.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:38 Heat of formation + Delta-G solvation = -132.282936 kcal Electronic energy + Delta-G solvation = -27986.206507 eV Core-core repulsion = 23930.876050 eV Total energy + Delta-G solvation = -4055.330457 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.45256 -38.01577 -37.81290 -36.91179 -35.51250 -34.24633 -32.44737 -32.11965 -31.22866 -29.95691 -29.23052 -28.26137 -24.85161 -24.53135 -23.11052 -22.08370 -21.46933 -19.79324 -18.91927 -18.57918 -17.61504 -17.29871 -16.69617 -16.52124 -16.34621 -15.23992 -14.96253 -14.89666 -14.55030 -14.17432 -13.97982 -13.80855 -13.76137 -13.43581 -13.26095 -12.88553 -12.84993 -12.46957 -12.39398 -12.14682 -11.92137 -11.77414 -11.74811 -11.66676 -11.30040 -11.23065 -11.14662 -11.02776 -10.83448 -10.71081 -10.51557 -10.42911 -10.01655 -9.41075 -9.29384 -8.80126 -8.67769 -8.33986 -8.16348 -6.28316 -4.35820 0.58588 0.88064 1.10237 2.74373 3.16927 3.19865 3.27447 3.29714 3.54795 4.10919 4.25554 4.35389 4.48440 4.49867 4.57070 4.73995 4.80409 4.98507 5.02071 5.07378 5.24979 5.34445 5.37479 5.44578 5.59049 5.70939 5.75018 5.83051 5.93797 5.97998 5.99915 6.04870 6.25211 6.41921 6.42965 6.62471 6.81551 6.94095 7.00807 7.06402 7.34512 7.36656 7.75250 8.02929 8.65621 9.33028 9.52145 10.79579 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013176 B = 0.003255 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.502975 B = 8599.686769 C = 9896.137880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.313 6.313 4 C 0.178 3.822 5 C -0.174 4.174 6 C 0.019 3.981 7 C -0.712 4.712 8 S 2.711 3.289 9 O -0.963 6.963 10 O -0.959 6.959 11 N -1.003 6.003 12 C 0.123 3.877 13 C -0.136 4.136 14 C 0.254 3.746 15 O -0.583 6.583 16 C -0.535 4.535 17 H 0.065 0.935 18 C 0.072 3.928 19 N -0.896 5.896 20 Si 0.903 3.097 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.273 1.273 24 C 0.129 3.871 25 C 0.023 3.977 26 C -0.231 4.231 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.139 0.861 33 H 0.146 0.854 34 H 0.062 0.938 35 H 0.048 0.952 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.385 0.615 39 H 0.269 0.731 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.144 0.856 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.396 -1.237 -8.824 19.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.226 6.226 4 C 0.132 3.868 5 C -0.194 4.194 6 C 0.000 4.000 7 C -0.798 4.798 8 S 2.802 3.198 9 O -0.953 6.953 10 O -0.949 6.949 11 N -0.842 5.842 12 C -0.002 4.002 13 C -0.175 4.175 14 C 0.212 3.788 15 O -0.393 6.393 16 C -0.574 4.574 17 H 0.083 0.917 18 C -0.130 4.130 19 N -0.536 5.536 20 Si 0.731 3.269 21 H -0.204 1.204 22 H -0.211 1.211 23 H -0.198 1.198 24 C 0.005 3.995 25 C 0.004 3.996 26 C -0.251 4.251 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.157 0.843 33 H 0.164 0.836 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.237 0.763 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.162 0.838 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.224 -1.198 -10.082 19.994 hybrid contribution -0.531 -0.592 1.747 1.919 sum -17.756 -1.789 -8.336 19.696 Atomic orbital electron populations 1.21782 0.92436 1.03062 1.03631 1.22899 0.96128 0.81566 1.01930 1.86096 1.18947 1.29972 1.87557 1.19251 0.82202 0.94411 0.90968 1.20526 0.95267 0.95014 1.08574 1.20754 0.92164 0.98169 0.88926 1.31203 1.27935 0.99654 1.21001 1.01285 0.73352 0.73354 0.71839 1.93534 1.84669 1.40617 1.76507 1.93547 1.76142 1.48889 1.76351 1.58391 1.80074 1.16109 1.29668 1.21808 0.99321 0.85544 0.93538 1.23199 1.00683 1.01259 0.92402 1.19551 0.80483 0.90072 0.88714 1.86100 1.22866 1.84536 1.45801 1.21499 1.28877 1.08703 0.98288 0.91685 1.24990 0.94439 0.94888 0.98716 1.69572 1.29650 1.22848 1.31541 0.86416 0.78608 0.80252 0.81637 1.20420 1.21113 1.19799 1.22219 0.97588 0.86966 0.92734 1.20753 0.94955 0.95720 0.88174 1.21337 0.94321 0.98361 1.11042 0.91465 0.90156 0.91370 0.91631 0.91495 0.84347 0.83586 0.91934 0.93336 0.91488 0.89984 0.76328 0.92101 0.90530 0.91407 0.83849 0.84651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.28 37.15 0.38 -0.45 16 2 C 0.05 0.36 5.46 37.15 0.20 0.57 16 3 O -0.31 -3.31 10.14 -19.43 -0.20 -3.51 16 4 C 0.18 2.12 6.69 -39.22 -0.26 1.86 16 5 C -0.17 -2.09 9.99 -39.43 -0.39 -2.48 16 6 C 0.02 0.25 9.51 -39.61 -0.38 -0.13 16 7 C -0.71 -10.48 5.98 -39.56 -0.24 -10.72 16 8 S 2.71 47.71 5.94 -107.50 -0.64 47.07 16 9 O -0.96 -18.40 16.86 -57.17 -0.96 -19.36 16 10 O -0.96 -18.91 16.59 -57.17 -0.95 -19.86 16 11 N -1.00 -18.99 3.70 -111.42 -0.41 -19.40 16 12 C 0.12 2.28 6.99 -3.07 -0.02 2.26 16 13 C -0.14 -2.89 5.64 -24.90 -0.14 -3.03 16 14 C 0.25 6.02 0.88 -89.62 -0.08 5.95 16 15 O -0.58 -14.92 13.16 -35.23 -0.46 -15.39 16 16 C -0.54 -13.57 8.25 -34.44 -0.28 -13.85 16 17 H 0.06 1.61 7.77 -52.49 -0.41 1.21 16 18 C 0.07 1.82 5.31 -17.82 -0.09 1.73 16 19 N -0.90 -22.89 10.81 55.43 0.60 -22.29 16 20 Si 0.90 19.84 29.54 -169.99 -5.02 14.82 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.29 -6.25 7.11 56.52 0.40 -5.84 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 C 0.13 2.69 6.28 -2.53 -0.02 2.68 16 25 C 0.02 0.31 9.52 -39.61 -0.38 -0.06 16 26 C -0.23 -2.68 9.04 -39.43 -0.36 -3.04 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.41 7.66 -51.93 -0.40 0.02 16 31 H 0.07 0.45 7.66 -51.93 -0.40 0.05 16 32 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.15 1.72 7.61 -52.49 -0.40 1.32 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.41 8.03 -51.93 -0.42 0.99 16 37 H 0.08 1.84 7.85 -51.93 -0.41 1.43 16 38 H 0.38 9.92 7.01 45.56 0.32 10.24 16 39 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 40 H 0.08 1.64 7.78 -51.93 -0.40 1.23 16 41 H 0.07 1.29 8.01 -51.93 -0.42 0.87 16 42 H 0.14 1.78 7.61 -52.48 -0.40 1.38 16 43 H 0.14 1.19 6.30 -52.49 -0.33 0.86 16 LS Contribution 368.21 15.07 5.55 5.55 Total: -1.00 -30.73 368.21 -9.88 -40.61 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -5.33 Total: 10.47 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: -2.05 Total: -18.72 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.19 Total: -41.69 kcal Atomic # 8 Polarization: -55.54 SS G_CDS: -2.57 Total: -58.11 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Atomic # 16 Polarization: 47.71 SS G_CDS: -0.64 Total: 47.07 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.73 -9.88 -40.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592072677.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.675 kcal (2) G-P(sol) polarization free energy of solvation -30.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds