Wall clock time and date at job start Sat Apr 11 2020 06:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42906 * 109.47167 * 2 1 4 4 C 1.35901 * 117.00136 * 179.97438 * 3 2 1 5 5 C 1.38730 * 120.05197 * 180.02562 * 4 3 2 6 6 C 1.38147 * 119.93902 * 179.97438 * 5 4 3 7 7 C 1.38264 * 120.05724 * 359.97438 * 6 5 4 8 8 S 1.76198 * 119.94536 * 180.02562 * 7 6 5 9 9 O 1.42100 * 106.40217 * 336.46291 * 8 7 6 10 10 O 1.42093 * 106.40547 * 203.53963 * 8 7 6 11 11 N 1.65611 * 107.21840 * 90.00157 * 8 7 6 12 12 C 1.47020 * 125.64872 * 269.96136 * 11 8 7 13 13 C 1.54316 * 107.27114 * 181.09041 * 12 11 8 14 14 C 1.55154 * 102.94177 * 22.19612 * 13 12 11 15 15 O 1.42897 * 111.04197 * 82.58299 * 14 13 12 16 16 C 1.50706 * 111.00479 * 206.42410 * 14 13 12 17 17 H 1.07995 * 120.00167 * 111.91520 * 16 14 13 18 18 C 1.37879 * 119.99394 * 292.19219 * 16 14 13 19 19 N 1.31514 * 120.00338 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99424 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47474 * 90.00322 * 20 18 16 22 22 H 1.48507 * 109.46754 * 210.00056 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99887 * 20 18 16 24 24 C 1.47426 * 125.64506 * 89.99795 * 11 8 7 25 25 C 1.38266 * 120.11003 * 0.27778 * 7 6 5 26 26 C 1.38142 * 120.05832 * 359.44772 * 25 7 6 27 27 H 1.09006 * 109.47146 * 60.00283 * 1 2 3 28 28 H 1.08995 * 109.47318 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47717 * 300.00215 * 1 2 3 30 30 H 1.08994 * 109.47436 * 239.99932 * 2 1 3 31 31 H 1.09006 * 109.47146 * 119.99717 * 2 1 3 32 32 H 1.07995 * 120.03384 * 359.95031 * 5 4 3 33 33 H 1.08000 * 119.97094 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.88246 * 300.51442 * 12 11 8 35 35 H 1.09005 * 109.88381 * 61.51771 * 12 11 8 36 36 H 1.08996 * 110.72266 * 263.82567 * 13 12 11 37 37 H 1.09004 * 110.71712 * 140.55438 * 13 12 11 38 38 H 0.96698 * 113.99943 * 64.60268 * 15 14 13 39 39 H 0.96996 * 119.99730 * 179.97438 * 19 18 16 40 40 H 1.08998 * 110.36567 * 37.00477 * 24 11 8 41 41 H 1.08998 * 110.36776 * 274.67626 * 24 11 8 42 42 H 1.08010 * 119.97047 * 179.70352 * 25 7 6 43 43 H 1.07993 * 120.03196 * 180.27502 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 3.8850 2.8069 0.0011 6 6 5.2549 2.9852 0.0022 7 6 6.0961 1.8879 0.0032 8 16 7.8429 2.1188 0.0053 9 8 8.0776 3.4103 -0.5388 10 8 8.4051 0.9325 -0.5384 11 7 8.3270 2.1830 1.5878 12 6 8.4217 3.4008 2.4061 13 6 8.9398 2.9789 3.7971 14 6 9.6458 1.6275 3.5098 15 8 10.9721 1.8354 3.0203 16 6 9.6569 0.7523 4.7366 17 1 9.0711 -0.1547 4.7582 18 6 10.4105 1.1126 5.8335 19 7 11.1193 2.2201 5.8094 20 14 10.4249 0.0274 7.3539 21 1 11.5197 -0.9695 7.2403 22 1 10.6431 0.8670 8.5593 23 1 9.1234 -0.6780 7.4710 24 6 8.7351 1.0287 2.4089 25 6 5.5689 0.6098 -0.0026 26 6 4.1997 0.4260 0.0021 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.2284 3.6643 0.0003 33 1 5.6691 3.9826 0.0031 34 1 9.1190 4.1021 1.9478 35 1 7.4388 3.8628 2.4984 36 1 8.1112 2.8412 4.4918 37 1 9.6499 3.7107 4.1824 38 1 11.5658 2.2537 3.6586 39 1 11.6491 2.4737 6.5813 40 1 9.2912 0.3114 1.8053 41 1 7.8619 0.5534 2.8559 42 1 6.2281 -0.2458 -0.0066 43 1 3.7884 -0.5725 0.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592072677.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:37 Heat of formation + Delta-G solvation = -154.438129 kcal Electronic energy + Delta-G solvation = -27987.167229 eV Core-core repulsion = 23930.876050 eV Total energy + Delta-G solvation = -4056.291179 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.29885 -39.71719 -38.68482 -38.37592 -36.98301 -36.04306 -34.07671 -33.07887 -32.13759 -30.96146 -30.79675 -29.95513 -26.69344 -25.23142 -24.10464 -23.12711 -22.75592 -21.58845 -20.16053 -19.56274 -19.17877 -18.81966 -18.18367 -17.37460 -17.17737 -16.89274 -16.60996 -16.07207 -15.90936 -15.76780 -15.09907 -14.93097 -14.67130 -14.60501 -14.42239 -14.24023 -14.10551 -13.63679 -13.43350 -13.35862 -13.26759 -13.25764 -13.19818 -13.10769 -12.77453 -12.76669 -12.53155 -12.26121 -12.16880 -12.00678 -11.93595 -11.81345 -11.79902 -11.21799 -10.58593 -10.23591 -10.07778 -9.88931 -9.68095 -8.19114 -6.33105 -0.71583 -0.20593 0.16625 1.45610 1.48684 1.56905 1.91911 2.03065 2.41735 2.43922 2.77637 3.05557 3.15531 3.58662 3.72157 3.78858 4.01845 4.03321 4.13178 4.15163 4.23249 4.32242 4.33337 4.42402 4.43810 4.68565 4.70700 4.74273 4.81457 4.91008 4.91687 4.95471 5.01191 5.05680 5.23188 5.24194 5.26517 5.45417 5.51415 5.51779 5.59880 5.84257 6.14037 6.20646 6.71489 7.37953 7.52446 8.87465 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013176 B = 0.003255 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.502975 B = 8599.686769 C = 9896.137880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.037 3.963 3 O -0.319 6.319 4 C 0.181 3.819 5 C -0.177 4.177 6 C 0.011 3.989 7 C -0.718 4.718 8 S 2.721 3.279 9 O -0.982 6.982 10 O -0.987 6.987 11 N -1.008 6.008 12 C 0.124 3.876 13 C -0.127 4.127 14 C 0.231 3.769 15 O -0.597 6.597 16 C -0.555 4.555 17 H 0.064 0.936 18 C 0.031 3.969 19 N -0.913 5.913 20 Si 0.962 3.038 21 H -0.281 1.281 22 H -0.283 1.283 23 H -0.267 1.267 24 C 0.135 3.865 25 C 0.010 3.990 26 C -0.228 4.228 27 H 0.065 0.935 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.160 0.840 33 H 0.156 0.844 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.379 0.621 39 H 0.270 0.730 40 H 0.063 0.937 41 H 0.087 0.913 42 H 0.148 0.852 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.144 -1.890 -8.747 22.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.037 4.037 3 O -0.232 6.232 4 C 0.133 3.867 5 C -0.196 4.196 6 C -0.008 4.008 7 C -0.809 4.809 8 S 2.817 3.183 9 O -0.973 6.973 10 O -0.978 6.978 11 N -0.846 5.846 12 C -0.001 4.001 13 C -0.167 4.167 14 C 0.190 3.810 15 O -0.406 6.406 16 C -0.594 4.594 17 H 0.083 0.917 18 C -0.170 4.170 19 N -0.553 5.553 20 Si 0.788 3.212 21 H -0.207 1.207 22 H -0.208 1.208 23 H -0.191 1.191 24 C 0.010 3.990 25 C -0.009 4.009 26 C -0.247 4.247 27 H 0.084 0.916 28 H 0.119 0.881 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.178 0.822 33 H 0.174 0.826 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.230 0.770 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.165 0.835 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -19.937 -1.844 -10.009 22.384 hybrid contribution 0.178 -0.426 1.667 1.730 sum -19.759 -2.270 -8.342 21.567 Atomic orbital electron populations 1.21816 0.91108 1.04361 1.03369 1.23248 0.97253 0.80218 1.02965 1.86114 1.18001 1.32121 1.86982 1.19424 0.82984 0.94481 0.89798 1.20783 0.94960 0.96097 1.07787 1.20936 0.92728 0.98176 0.88954 1.30591 1.25207 1.01041 1.24044 1.00631 0.74344 0.72351 0.70959 1.93500 1.85762 1.41412 1.76647 1.93504 1.77783 1.49752 1.76727 1.58347 1.81067 1.15462 1.29768 1.21806 1.01071 0.85452 0.91729 1.23004 1.00065 0.99575 0.94038 1.19878 0.80106 0.91490 0.89510 1.86093 1.23999 1.84595 1.45961 1.21778 1.29271 1.09088 0.99220 0.91740 1.25667 0.94205 0.95986 1.01106 1.69657 1.29854 1.23748 1.32084 0.85501 0.78529 0.78600 0.78590 1.20722 1.20834 1.19141 1.22068 0.97607 0.87228 0.92079 1.20930 0.96088 0.95324 0.88560 1.21601 0.93393 0.99846 1.09868 0.91601 0.88085 0.91767 0.90387 0.90620 0.82202 0.82607 0.92403 0.89788 0.91302 0.91698 0.76980 0.92054 0.91811 0.89537 0.83459 0.81848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 71.98 0.74 -0.46 16 2 C 0.04 0.43 5.46 71.98 0.39 0.82 16 3 O -0.32 -5.80 10.14 -92.43 -0.94 -6.74 16 4 C 0.18 3.78 6.69 22.51 0.15 3.93 16 5 C -0.18 -3.77 9.99 22.37 0.22 -3.55 16 6 C 0.01 0.28 9.51 22.25 0.21 0.49 16 7 C -0.72 -20.24 5.98 22.28 0.13 -20.11 16 8 S 2.72 95.34 5.94 -56.49 -0.34 95.00 16 9 O -0.98 -37.41 16.86 -128.00 -2.16 -39.57 16 10 O -0.99 -39.38 16.59 -128.00 -2.12 -41.50 16 11 N -1.01 -37.92 3.70 -506.43 -1.87 -39.79 16 12 C 0.12 4.55 6.99 86.73 0.61 5.15 16 13 C -0.13 -5.44 5.64 31.78 0.18 -5.26 16 14 C 0.23 11.13 0.88 -10.15 -0.01 11.12 16 15 O -0.60 -31.44 13.16 -148.98 -1.96 -33.40 16 16 C -0.56 -28.29 8.25 25.60 0.21 -28.08 16 17 H 0.06 3.20 7.77 -2.91 -0.02 3.18 16 18 C 0.03 1.56 5.31 84.66 0.45 2.01 16 19 N -0.91 -47.15 10.81 21.45 0.23 -46.92 16 20 Si 0.96 40.52 29.54 68.60 2.03 42.55 16 21 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 22 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 23 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 24 C 0.14 5.65 6.28 86.86 0.55 6.19 16 25 C 0.01 0.26 9.52 22.25 0.21 0.48 16 26 C -0.23 -4.66 9.04 22.37 0.20 -4.46 16 27 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.56 16 30 H 0.08 0.72 7.66 -2.39 -0.02 0.70 16 31 H 0.08 0.75 7.66 -2.38 -0.02 0.74 16 32 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 33 H 0.16 3.40 7.61 -2.91 -0.02 3.38 16 34 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 36 H 0.07 2.87 8.03 -2.39 -0.02 2.85 16 37 H 0.06 2.96 7.85 -2.38 -0.02 2.94 16 38 H 0.38 20.27 7.01 -74.06 -0.52 19.75 16 39 H 0.27 13.31 8.31 -92.71 -0.77 12.54 16 40 H 0.06 2.78 7.78 -2.39 -0.02 2.76 16 41 H 0.09 3.24 8.01 -2.39 -0.02 3.22 16 42 H 0.15 3.50 7.61 -2.91 -0.02 3.48 16 43 H 0.16 2.30 6.30 -2.91 -0.02 2.28 16 Total: -1.00 -65.64 368.21 -2.37 -68.00 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: 0.51 Total: 34.10 kcal Atomic # 6 Polarization: -35.98 SS G_CDS: 4.25 Total: -31.73 kcal Atomic # 7 Polarization: -85.08 SS G_CDS: -1.64 Total: -86.72 kcal Atomic # 8 Polarization: -114.03 SS G_CDS: -7.18 Total: -121.21 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Atomic # 16 Polarization: 95.34 SS G_CDS: -0.34 Total: 95.00 kcal Total: -65.64 -2.37 -68.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592072677.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.433 kcal (2) G-P(sol) polarization free energy of solvation -65.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds