Wall clock time and date at job start Sat Apr 11 2020 06:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42896 * 109.47248 * 2 1 4 4 C 1.35902 * 117.00248 * 179.97438 * 3 2 1 5 5 C 1.38737 * 120.04990 * 0.27954 * 4 3 2 6 6 C 1.38148 * 119.93805 * 180.29119 * 5 4 3 7 7 C 1.38264 * 120.05715 * 359.45338 * 6 5 4 8 8 S 1.76204 * 119.94576 * 180.27609 * 7 6 5 9 9 O 1.42101 * 106.39853 * 203.53801 * 8 7 6 10 10 O 1.42103 * 106.39822 * 336.45337 * 8 7 6 11 11 N 1.65597 * 107.21774 * 89.99471 * 8 7 6 12 12 C 1.47019 * 125.64795 * 269.69204 * 11 8 7 13 13 C 1.54332 * 107.26643 * 178.85570 * 12 11 8 14 14 C 1.55156 * 103.01947 * 338.13787 * 13 12 11 15 15 O 1.42905 * 111.00735 * 277.23695 * 14 13 12 16 16 C 1.50698 * 111.03839 * 153.39878 * 14 13 12 17 17 H 1.08002 * 119.99922 * 242.53190 * 16 14 13 18 18 C 1.37876 * 120.00411 * 62.53685 * 16 14 13 19 19 N 1.31523 * 119.99570 * 4.91921 * 18 16 14 20 20 Si 1.86794 * 120.00366 * 184.92569 * 18 16 14 21 21 H 1.48500 * 109.47210 * 94.99727 * 20 18 16 22 22 H 1.48502 * 109.47350 * 214.99661 * 20 18 16 23 23 H 1.48500 * 109.46865 * 334.99583 * 20 18 16 24 24 C 1.47419 * 125.64754 * 90.00409 * 11 8 7 25 25 C 1.38268 * 120.11155 * 0.24482 * 7 6 5 26 26 C 1.38146 * 120.05276 * 0.03260 * 25 7 6 27 27 H 1.08992 * 109.47578 * 60.00108 * 1 2 3 28 28 H 1.09006 * 109.47487 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.47428 * 299.99836 * 1 2 3 30 30 H 1.09002 * 109.47123 * 239.99597 * 2 1 3 31 31 H 1.09000 * 109.46973 * 119.99907 * 2 1 3 32 32 H 1.07994 * 120.03169 * 0.03975 * 5 4 3 33 33 H 1.07999 * 119.97014 * 179.71948 * 6 5 4 34 34 H 1.09007 * 109.88282 * 298.39770 * 12 11 8 35 35 H 1.08998 * 109.88661 * 59.56077 * 12 11 8 36 36 H 1.09002 * 110.84813 * 219.67434 * 13 12 11 37 37 H 1.08993 * 110.67500 * 96.52048 * 13 12 11 38 38 H 0.96703 * 113.99531 * 292.19640 * 15 14 13 39 39 H 0.96997 * 119.99599 * 180.02562 * 19 18 16 40 40 H 1.09004 * 110.37014 * 322.92944 * 24 11 8 41 41 H 1.09001 * 110.37055 * 85.14136 * 24 11 8 42 42 H 1.08001 * 119.97416 * 180.02562 * 25 7 6 43 43 H 1.08006 * 120.02236 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1997 0.4258 -0.0048 6 6 5.5689 0.6095 0.0019 7 6 6.0962 1.8877 0.0024 8 16 7.8430 2.1185 0.0035 9 8 8.0767 3.4100 0.5483 10 8 8.4042 0.9321 0.5483 11 7 8.3300 2.1829 -1.5779 12 6 8.7446 1.0326 -2.3943 13 6 9.0811 1.5676 -3.8022 14 6 8.3039 2.9092 -3.8613 15 8 6.9367 2.6940 -4.2170 16 6 8.9614 3.8738 -4.8143 17 1 9.3576 4.8094 -4.4479 18 6 9.0572 3.5622 -6.1540 19 7 8.4903 2.4694 -6.6170 20 14 9.9922 4.6917 -7.3112 21 1 11.3863 4.2026 -7.4613 22 1 9.3258 4.7022 -8.6383 23 1 10.0076 6.0681 -6.7542 24 6 8.4258 3.4039 -2.3984 25 6 5.2550 2.9850 0.0014 26 6 3.8851 2.8067 0.0005 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.7884 -0.5727 -0.0100 33 1 6.2280 -0.2460 0.0023 34 1 9.6244 0.5633 -1.9539 35 1 7.9302 0.3110 -2.4588 36 1 8.7269 0.8825 -4.5725 37 1 10.1529 1.7382 -3.9031 38 1 6.8105 2.3836 -5.1241 39 1 8.5580 2.2500 -7.5594 40 1 7.6102 4.0865 -2.1595 41 1 9.3871 3.8928 -2.2404 42 1 5.6693 3.9825 0.0014 43 1 3.2285 3.6642 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592072679.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:41 Heat of formation + Delta-G solvation = -132.865965 kcal Electronic energy + Delta-G solvation = -28255.381605 eV Core-core repulsion = 24200.025866 eV Total energy + Delta-G solvation = -4055.355739 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.33130 -38.02943 -37.69189 -36.92103 -35.53514 -34.25497 -32.35117 -32.17400 -31.10407 -29.84867 -29.21994 -28.26755 -24.86573 -24.42275 -23.01882 -21.96392 -21.47900 -19.80864 -18.84108 -18.52097 -17.70573 -16.99879 -16.88433 -16.42191 -16.26582 -15.22355 -14.97348 -14.79414 -14.53610 -14.15421 -13.90006 -13.70617 -13.63834 -13.38384 -13.28099 -12.88058 -12.75740 -12.44867 -12.31921 -12.05422 -11.88945 -11.81376 -11.77572 -11.70566 -11.34937 -11.13486 -11.03990 -11.03012 -10.78173 -10.74847 -10.51785 -10.42991 -10.01097 -9.41116 -9.15423 -8.72512 -8.63834 -8.34396 -8.18390 -6.29955 -4.37179 0.65203 0.98307 1.24073 2.85578 3.19125 3.23284 3.27522 3.31547 3.59310 4.10901 4.25365 4.43560 4.56660 4.57602 4.67505 4.81104 4.88990 4.97523 5.11576 5.18566 5.34519 5.42226 5.42801 5.48557 5.67424 5.82950 5.83408 5.90154 5.92517 6.03734 6.09268 6.12486 6.20745 6.37928 6.55889 6.61658 6.80803 6.94862 7.05578 7.13145 7.35341 7.38056 7.73715 8.01820 8.65750 9.31011 9.45651 10.77604 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013003 B = 0.003484 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.857046 B = 8035.907303 C = 9255.698410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.312 6.312 4 C 0.179 3.821 5 C -0.232 4.232 6 C 0.023 3.977 7 C -0.707 4.707 8 S 2.711 3.289 9 O -0.961 6.961 10 O -0.966 6.966 11 N -1.003 6.003 12 C 0.123 3.877 13 C -0.134 4.134 14 C 0.251 3.749 15 O -0.585 6.585 16 C -0.536 4.536 17 H 0.066 0.934 18 C 0.072 3.928 19 N -0.895 5.895 20 Si 0.902 3.098 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.272 1.272 24 C 0.136 3.864 25 C 0.025 3.975 26 C -0.172 4.172 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.134 0.866 33 H 0.140 0.860 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.384 0.616 39 H 0.268 0.732 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.146 0.854 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.749 -6.093 10.651 16.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.226 6.226 4 C 0.133 3.867 5 C -0.251 4.251 6 C 0.003 3.997 7 C -0.794 4.794 8 S 2.802 3.198 9 O -0.952 6.952 10 O -0.957 6.957 11 N -0.842 5.842 12 C -0.002 4.002 13 C -0.174 4.174 14 C 0.209 3.791 15 O -0.394 6.394 16 C -0.575 4.575 17 H 0.084 0.916 18 C -0.130 4.130 19 N -0.535 5.535 20 Si 0.730 3.270 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.196 1.196 24 C 0.012 3.988 25 C 0.006 3.994 26 C -0.191 4.191 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.152 0.848 33 H 0.158 0.842 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.235 0.765 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.164 0.836 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.554 -5.805 11.935 16.957 hybrid contribution -0.135 -0.106 -1.693 1.701 sum -10.689 -5.911 10.243 15.941 Atomic orbital electron populations 1.21781 0.92497 1.02977 1.03645 1.22879 0.96085 0.81688 1.01833 1.86094 1.19013 1.29838 1.87609 1.19227 0.82125 0.94413 0.90970 1.21286 0.94313 0.98245 1.11258 1.20665 0.94920 0.95522 0.88574 1.31043 1.27584 0.99675 1.21085 1.01248 0.73535 0.73229 0.71770 1.93549 1.84799 1.40451 1.76405 1.93529 1.76566 1.48992 1.76609 1.58420 1.79861 1.16220 1.29725 1.21808 0.98052 0.87023 0.93274 1.23156 1.01254 1.00535 0.92443 1.19611 0.80312 0.90484 0.88680 1.86085 1.27090 1.89892 1.36354 1.21513 1.38399 1.04858 0.92735 0.91571 1.24995 0.94679 0.95202 0.98155 1.69642 1.43701 1.24883 1.15269 0.86413 0.79755 0.81006 0.79850 1.20524 1.21133 1.19649 1.22168 1.00846 0.84629 0.91191 1.20732 0.92207 0.98148 0.88339 1.20513 0.95284 0.95011 1.08311 0.91330 0.90230 0.91501 0.91530 0.91744 0.84803 0.84199 0.92412 0.92925 0.89954 0.91407 0.76531 0.92196 0.91555 0.90597 0.83623 0.84345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 37.16 0.38 -0.58 16 2 C 0.05 0.42 5.46 37.16 0.20 0.62 16 3 O -0.31 -3.72 10.14 -19.43 -0.20 -3.92 16 4 C 0.18 2.40 6.69 -39.22 -0.26 2.14 16 5 C -0.23 -2.97 9.04 -39.43 -0.36 -3.32 16 6 C 0.02 0.33 9.52 -39.60 -0.38 -0.05 16 7 C -0.71 -11.30 5.97 -39.56 -0.24 -11.54 16 8 S 2.71 47.77 5.94 -107.50 -0.64 47.13 16 9 O -0.96 -18.52 16.86 -57.17 -0.96 -19.48 16 10 O -0.97 -18.08 16.86 -57.17 -0.96 -19.04 16 11 N -1.00 -18.96 3.70 -111.42 -0.41 -19.38 16 12 C 0.12 2.29 6.99 -3.06 -0.02 2.27 16 13 C -0.13 -2.86 5.50 -24.89 -0.14 -2.99 16 14 C 0.25 5.83 0.89 -89.62 -0.08 5.75 16 15 O -0.58 -14.26 13.19 -35.23 -0.46 -14.72 16 16 C -0.54 -13.53 8.26 -34.44 -0.28 -13.81 16 17 H 0.07 1.66 7.79 -52.49 -0.41 1.25 16 18 C 0.07 1.81 5.26 -17.82 -0.09 1.72 16 19 N -0.90 -22.59 10.77 55.43 0.60 -21.99 16 20 Si 0.90 19.80 29.54 -169.99 -5.02 14.78 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 24 C 0.14 2.83 6.16 -2.53 -0.02 2.81 16 25 C 0.03 0.38 9.52 -39.60 -0.38 0.00 16 26 C -0.17 -2.38 9.99 -39.44 -0.39 -2.77 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 30 H 0.07 0.52 7.65 -51.93 -0.40 0.12 16 31 H 0.06 0.46 7.67 -51.93 -0.40 0.06 16 32 H 0.13 1.31 6.30 -52.49 -0.33 0.98 16 33 H 0.14 1.80 7.61 -52.49 -0.40 1.40 16 34 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 1.83 7.71 -51.93 -0.40 1.43 16 37 H 0.07 1.45 8.03 -51.93 -0.42 1.03 16 38 H 0.38 9.58 7.18 45.56 0.33 9.90 16 39 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 41 H 0.08 1.52 8.03 -51.93 -0.42 1.11 16 42 H 0.15 2.03 7.61 -52.49 -0.40 1.63 16 43 H 0.14 1.62 8.06 -52.48 -0.42 1.19 16 LS Contribution 368.64 15.07 5.56 5.56 Total: -1.00 -29.91 368.64 -9.89 -39.80 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -5.34 Total: 11.03 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: -2.05 Total: -19.76 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.19 Total: -41.37 kcal Atomic # 8 Polarization: -54.57 SS G_CDS: -2.59 Total: -57.16 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 16 Polarization: 47.77 SS G_CDS: -0.64 Total: 47.13 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.91 -9.89 -39.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592072679.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.066 kcal (2) G-P(sol) polarization free energy of solvation -29.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds