Wall clock time and date at job start Sat Apr 11 2020 06:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42896 * 109.47248 * 2 1 4 4 C 1.35902 * 117.00248 * 179.97438 * 3 2 1 5 5 C 1.38737 * 120.04990 * 0.27954 * 4 3 2 6 6 C 1.38148 * 119.93805 * 180.29119 * 5 4 3 7 7 C 1.38264 * 120.05715 * 359.45338 * 6 5 4 8 8 S 1.76204 * 119.94576 * 180.27609 * 7 6 5 9 9 O 1.42101 * 106.39853 * 203.53801 * 8 7 6 10 10 O 1.42103 * 106.39822 * 336.45337 * 8 7 6 11 11 N 1.65597 * 107.21774 * 89.99471 * 8 7 6 12 12 C 1.47019 * 125.64795 * 269.69204 * 11 8 7 13 13 C 1.54332 * 107.26643 * 178.85570 * 12 11 8 14 14 C 1.55156 * 103.01947 * 338.13787 * 13 12 11 15 15 O 1.42905 * 111.00735 * 277.23695 * 14 13 12 16 16 C 1.50698 * 111.03839 * 153.39878 * 14 13 12 17 17 H 1.08002 * 119.99922 * 242.53190 * 16 14 13 18 18 C 1.37876 * 120.00411 * 62.53685 * 16 14 13 19 19 N 1.31523 * 119.99570 * 4.91921 * 18 16 14 20 20 Si 1.86794 * 120.00366 * 184.92569 * 18 16 14 21 21 H 1.48500 * 109.47210 * 94.99727 * 20 18 16 22 22 H 1.48502 * 109.47350 * 214.99661 * 20 18 16 23 23 H 1.48500 * 109.46865 * 334.99583 * 20 18 16 24 24 C 1.47419 * 125.64754 * 90.00409 * 11 8 7 25 25 C 1.38268 * 120.11155 * 0.24482 * 7 6 5 26 26 C 1.38146 * 120.05276 * 0.03260 * 25 7 6 27 27 H 1.08992 * 109.47578 * 60.00108 * 1 2 3 28 28 H 1.09006 * 109.47487 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.47428 * 299.99836 * 1 2 3 30 30 H 1.09002 * 109.47123 * 239.99597 * 2 1 3 31 31 H 1.09000 * 109.46973 * 119.99907 * 2 1 3 32 32 H 1.07994 * 120.03169 * 0.03975 * 5 4 3 33 33 H 1.07999 * 119.97014 * 179.71948 * 6 5 4 34 34 H 1.09007 * 109.88282 * 298.39770 * 12 11 8 35 35 H 1.08998 * 109.88661 * 59.56077 * 12 11 8 36 36 H 1.09002 * 110.84813 * 219.67434 * 13 12 11 37 37 H 1.08993 * 110.67500 * 96.52048 * 13 12 11 38 38 H 0.96703 * 113.99531 * 292.19640 * 15 14 13 39 39 H 0.96997 * 119.99599 * 180.02562 * 19 18 16 40 40 H 1.09004 * 110.37014 * 322.92944 * 24 11 8 41 41 H 1.09001 * 110.37055 * 85.14136 * 24 11 8 42 42 H 1.08001 * 119.97416 * 180.02562 * 25 7 6 43 43 H 1.08006 * 120.02236 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1997 0.4258 -0.0048 6 6 5.5689 0.6095 0.0019 7 6 6.0962 1.8877 0.0024 8 16 7.8430 2.1185 0.0035 9 8 8.0767 3.4100 0.5483 10 8 8.4042 0.9321 0.5483 11 7 8.3300 2.1829 -1.5779 12 6 8.7446 1.0326 -2.3943 13 6 9.0811 1.5676 -3.8022 14 6 8.3039 2.9092 -3.8613 15 8 6.9367 2.6940 -4.2170 16 6 8.9614 3.8738 -4.8143 17 1 9.3576 4.8094 -4.4479 18 6 9.0572 3.5622 -6.1540 19 7 8.4903 2.4694 -6.6170 20 14 9.9922 4.6917 -7.3112 21 1 11.3863 4.2026 -7.4613 22 1 9.3258 4.7022 -8.6383 23 1 10.0076 6.0681 -6.7542 24 6 8.4258 3.4039 -2.3984 25 6 5.2550 2.9850 0.0014 26 6 3.8851 2.8067 0.0005 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.7884 -0.5727 -0.0100 33 1 6.2280 -0.2460 0.0023 34 1 9.6244 0.5633 -1.9539 35 1 7.9302 0.3110 -2.4588 36 1 8.7269 0.8825 -4.5725 37 1 10.1529 1.7382 -3.9031 38 1 6.8105 2.3836 -5.1241 39 1 8.5580 2.2500 -7.5594 40 1 7.6102 4.0865 -2.1595 41 1 9.3871 3.8928 -2.2404 42 1 5.6693 3.9825 0.0014 43 1 3.2285 3.6642 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592072679.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:40 Heat of formation + Delta-G solvation = -154.022509 kcal Electronic energy + Delta-G solvation = -28256.299022 eV Core-core repulsion = 24200.025866 eV Total energy + Delta-G solvation = -4056.273156 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.28554 -39.71514 -38.66822 -38.37193 -36.99247 -36.01547 -34.10087 -33.07360 -32.12604 -30.93645 -30.78906 -29.95166 -26.69874 -25.22459 -24.11073 -23.08033 -22.79902 -21.57979 -20.15134 -19.59922 -19.21873 -18.58264 -18.34672 -17.37912 -17.17347 -16.88747 -16.60405 -16.07413 -15.89038 -15.75011 -15.09328 -14.94052 -14.67166 -14.57562 -14.47138 -14.21633 -14.10599 -13.61885 -13.42343 -13.35679 -13.29448 -13.24828 -13.20939 -13.14789 -12.77221 -12.76750 -12.51156 -12.29034 -12.17705 -12.00498 -11.92946 -11.80780 -11.79930 -11.19501 -10.57331 -10.21811 -10.07695 -9.89637 -9.65711 -8.20103 -6.33448 -0.69226 -0.17597 0.18164 1.44531 1.48446 1.56915 1.90614 2.03384 2.40858 2.43996 2.75935 3.05422 3.15421 3.59076 3.72249 3.76260 4.01750 4.03819 4.13182 4.16174 4.24051 4.31553 4.32920 4.43003 4.44053 4.62998 4.71580 4.73961 4.81394 4.90923 4.91527 4.95839 5.01263 5.05572 5.22831 5.23729 5.27489 5.44185 5.53062 5.55479 5.60584 5.83858 6.14495 6.21927 6.71516 7.37255 7.51247 8.85890 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013003 B = 0.003484 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.857046 B = 8035.907303 C = 9255.698410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.037 3.963 3 O -0.321 6.321 4 C 0.179 3.821 5 C -0.228 4.228 6 C 0.012 3.988 7 C -0.721 4.721 8 S 2.725 3.275 9 O -0.982 6.982 10 O -0.977 6.977 11 N -1.006 6.006 12 C 0.124 3.876 13 C -0.127 4.127 14 C 0.236 3.764 15 O -0.590 6.590 16 C -0.559 4.559 17 H 0.060 0.940 18 C 0.035 3.965 19 N -0.909 5.909 20 Si 0.958 3.042 21 H -0.276 1.276 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.138 3.862 25 C 0.009 3.991 26 C -0.181 4.181 27 H 0.061 0.939 28 H 0.103 0.897 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.166 0.834 33 H 0.154 0.846 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.378 0.622 39 H 0.270 0.730 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.148 0.852 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.839 -7.149 11.063 17.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.037 4.037 3 O -0.234 6.234 4 C 0.132 3.868 5 C -0.248 4.248 6 C -0.008 4.008 7 C -0.811 4.811 8 S 2.820 3.180 9 O -0.973 6.973 10 O -0.968 6.968 11 N -0.845 5.845 12 C 0.000 4.000 13 C -0.167 4.167 14 C 0.195 3.805 15 O -0.399 6.399 16 C -0.598 4.598 17 H 0.078 0.922 18 C -0.166 4.166 19 N -0.548 5.548 20 Si 0.784 3.216 21 H -0.202 1.202 22 H -0.209 1.209 23 H -0.198 1.198 24 C 0.013 3.987 25 C -0.010 4.010 26 C -0.201 4.201 27 H 0.080 0.920 28 H 0.121 0.879 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.184 0.816 33 H 0.171 0.829 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.228 0.772 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.166 0.834 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -11.614 -6.866 12.354 18.294 hybrid contribution 0.048 0.178 -1.792 1.802 sum -11.566 -6.688 10.562 17.031 Atomic orbital electron populations 1.21819 0.91070 1.04420 1.03313 1.23256 0.97289 0.80191 1.02959 1.86108 1.18012 1.32238 1.87062 1.19383 0.83042 0.94419 0.89948 1.21613 0.93550 0.99699 1.09887 1.20938 0.96054 0.95241 0.88521 1.30699 1.25928 1.00903 1.23552 1.00615 0.74014 0.72454 0.70931 1.93514 1.85638 1.41518 1.76656 1.93505 1.77533 1.49198 1.76591 1.58396 1.80727 1.15527 1.29815 1.21818 0.99451 0.87079 0.91686 1.22975 1.00415 0.99401 0.93910 1.19790 0.79783 0.91294 0.89606 1.86077 1.28019 1.89938 1.35849 1.21772 1.39046 1.05241 0.93701 0.92207 1.25601 0.95299 0.96408 0.99271 1.69712 1.43982 1.25618 1.15514 0.85553 0.78695 0.79321 0.78053 1.20167 1.20949 1.19794 1.22024 1.01050 0.85382 0.90207 1.20878 0.92943 0.98194 0.88993 1.20748 0.95023 0.96229 1.08056 0.91968 0.87888 0.91545 0.90781 0.90152 0.81630 0.82882 0.90558 0.91506 0.91264 0.92071 0.77207 0.92073 0.91501 0.90353 0.83410 0.82737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 71.98 0.74 -0.77 16 2 C 0.04 0.51 5.46 71.98 0.39 0.91 16 3 O -0.32 -6.95 10.14 -92.45 -0.94 -7.89 16 4 C 0.18 4.46 6.69 22.50 0.15 4.61 16 5 C -0.23 -5.28 9.04 22.37 0.20 -5.08 16 6 C 0.01 0.32 9.52 22.25 0.21 0.53 16 7 C -0.72 -22.47 5.97 22.28 0.13 -22.34 16 8 S 2.73 94.71 5.94 -56.49 -0.34 94.38 16 9 O -0.98 -37.88 16.86 -128.00 -2.16 -40.04 16 10 O -0.98 -35.60 16.86 -128.00 -2.16 -37.76 16 11 N -1.01 -37.60 3.70 -506.41 -1.87 -39.47 16 12 C 0.12 4.51 6.99 86.73 0.61 5.12 16 13 C -0.13 -5.43 5.50 31.79 0.17 -5.25 16 14 C 0.24 11.07 0.89 -10.15 -0.01 11.06 16 15 O -0.59 -29.02 13.19 -148.98 -1.97 -30.98 16 16 C -0.56 -28.44 8.26 25.60 0.21 -28.22 16 17 H 0.06 3.03 7.79 -2.91 -0.02 3.01 16 18 C 0.04 1.77 5.26 84.65 0.45 2.21 16 19 N -0.91 -45.91 10.77 21.45 0.23 -45.68 16 20 Si 0.96 40.51 29.54 68.60 2.03 42.54 16 21 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 22 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 24 C 0.14 5.78 6.16 86.86 0.53 6.31 16 25 C 0.01 0.28 9.52 22.25 0.21 0.49 16 26 C -0.18 -4.81 9.99 22.36 0.22 -4.59 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 28 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.07 0.93 7.65 -2.39 -0.02 0.91 16 31 H 0.08 0.87 7.67 -2.39 -0.02 0.86 16 32 H 0.17 2.64 6.30 -2.91 -0.02 2.62 16 33 H 0.15 3.63 7.61 -2.91 -0.02 3.61 16 34 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 35 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.07 3.10 7.71 -2.39 -0.02 3.08 16 37 H 0.06 2.63 8.03 -2.39 -0.02 2.61 16 38 H 0.38 19.14 7.18 -74.06 -0.53 18.61 16 39 H 0.27 13.04 8.31 -92.71 -0.77 12.27 16 40 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 41 H 0.08 3.18 8.03 -2.39 -0.02 3.16 16 42 H 0.15 4.16 7.61 -2.91 -0.02 4.14 16 43 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -62.63 368.64 -2.44 -65.07 By element: Atomic # 1 Polarization: 34.36 SS G_CDS: 0.50 Total: 34.86 kcal Atomic # 6 Polarization: -39.25 SS G_CDS: 4.23 Total: -35.02 kcal Atomic # 7 Polarization: -83.51 SS G_CDS: -1.64 Total: -85.15 kcal Atomic # 8 Polarization: -109.45 SS G_CDS: -7.22 Total: -116.67 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Atomic # 16 Polarization: 94.71 SS G_CDS: -0.34 Total: 94.38 kcal Total: -62.63 -2.44 -65.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592072679.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.954 kcal (2) G-P(sol) polarization free energy of solvation -62.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds