Wall clock time and date at job start Sat Apr 11 2020 06:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47321 * 2 1 4 4 N 1.46496 * 109.47217 * 60.00083 * 3 2 1 5 5 S 1.65606 * 120.00225 * 165.00115 * 4 3 2 6 6 O 1.42096 * 104.27627 * 181.07082 * 5 4 3 7 7 O 1.42101 * 104.27402 * 308.92670 * 5 4 3 8 8 C 1.81397 * 104.44733 * 65.00040 * 5 4 3 9 9 C 1.53001 * 109.46890 * 180.02562 * 8 5 4 10 10 C 1.50700 * 109.47085 * 179.97438 * 9 8 5 11 11 H 1.07995 * 120.00061 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99965 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99763 * 179.97438 * 12 10 9 14 14 Si 1.86794 * 119.99939 * 359.97438 * 12 10 9 15 15 H 1.48508 * 109.47091 * 90.00635 * 14 12 10 16 16 H 1.48499 * 109.47338 * 210.00151 * 14 12 10 17 17 H 1.48493 * 109.47466 * 330.00445 * 14 12 10 18 18 C 1.50697 * 109.47138 * 119.99943 * 2 1 3 19 19 O 1.20827 * 119.99969 * 0.02562 * 18 2 1 20 20 O 1.34233 * 120.00061 * 179.97438 * 18 2 1 21 21 C 1.50706 * 109.47313 * 239.99977 * 2 1 3 22 22 C 1.38237 * 119.99744 * 300.00581 * 21 2 1 23 23 C 1.38235 * 119.99712 * 180.02562 * 22 21 2 24 24 C 1.38234 * 120.00220 * 359.94731 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00223 * 120.01792 * 21 2 1 27 27 H 1.08995 * 109.47023 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46677 * 299.99918 * 1 2 3 29 29 H 1.09000 * 109.46795 * 59.99709 * 1 2 3 30 30 H 1.09001 * 109.47464 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47424 * 299.99906 * 3 2 1 32 32 H 0.97002 * 119.99895 * 344.99994 * 4 3 2 33 33 H 1.09004 * 109.47140 * 299.99395 * 8 5 4 34 34 H 1.08992 * 109.47705 * 60.00130 * 8 5 4 35 35 H 1.08992 * 109.47135 * 300.00059 * 9 8 5 36 36 H 1.08999 * 109.47071 * 60.00206 * 9 8 5 37 37 H 0.97001 * 119.99891 * 179.97438 * 13 12 10 38 38 H 0.96702 * 117.00104 * 180.02562 * 20 18 2 39 39 H 1.08005 * 120.00088 * 359.97438 * 22 21 2 40 40 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 41 41 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 42 42 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 43 43 H 1.07998 * 119.99975 * 0.02562 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.5518 2.1331 1.1961 5 16 2.2319 3.5707 1.6579 6 8 1.5366 3.9215 2.8464 7 8 3.6283 3.3077 1.6766 8 6 1.8182 4.7188 0.3159 9 6 2.3990 6.0994 0.6287 10 6 2.0558 7.0531 -0.4865 11 1 1.4813 6.7089 -1.3338 12 6 2.4762 8.3648 -0.4257 13 7 2.1771 9.1970 -1.3991 14 14 3.4704 8.9599 1.0395 15 1 4.9175 8.7692 0.7660 16 1 3.1963 10.4009 1.2714 17 1 3.0879 8.1830 2.2457 18 6 2.0323 -0.7104 1.2304 19 8 1.2472 -1.1700 2.0256 20 8 3.3521 -0.8335 1.4426 21 6 2.0324 -0.7104 -1.2305 22 6 1.6984 -2.0339 -1.4493 23 6 2.1596 -2.6857 -2.5777 24 6 2.9540 -2.0138 -3.4878 25 6 3.2921 -0.6918 -3.2666 26 6 2.8275 -0.0388 -2.1402 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 3.1301 1.4425 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 0.8301 1.7483 1.7177 33 1 2.2398 4.3512 -0.6197 34 1 0.7348 4.7929 0.2220 35 1 1.9779 6.4672 1.5643 36 1 3.4824 6.0250 0.7221 37 1 2.4725 10.1199 -1.3561 38 1 3.6263 -1.2974 2.2455 39 1 1.0777 -2.5588 -0.7382 40 1 1.8990 -3.7197 -2.7484 41 1 3.3140 -2.5230 -4.3696 42 1 3.9163 -0.1681 -3.9754 43 1 3.0889 0.9950 -1.9690 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593219938.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:50 Heat of formation + Delta-G solvation = -143.684693 kcal Electronic energy + Delta-G solvation = -28003.509968 eV Core-core repulsion = 23947.685094 eV Total energy + Delta-G solvation = -4055.824875 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.27244 -39.37824 -37.00803 -36.69237 -36.26387 -35.62068 -33.98803 -33.29813 -31.51942 -31.32387 -29.68541 -26.90511 -26.01541 -24.90290 -22.83682 -22.47837 -21.36199 -20.13747 -19.25259 -18.33704 -17.92790 -17.50925 -17.16175 -16.57838 -16.26499 -15.75527 -15.51226 -15.13500 -15.01063 -14.62801 -14.51559 -14.30748 -13.93548 -13.71596 -13.58660 -13.31745 -13.06623 -12.82620 -12.49886 -12.32887 -12.07966 -11.93225 -11.77654 -11.75261 -11.73137 -11.67770 -11.39397 -11.28743 -11.23355 -11.08609 -10.78092 -10.48209 -10.19251 -9.90667 -9.55603 -9.27663 -9.21320 -9.11126 -8.68561 -6.18948 -4.20448 0.58260 0.93835 1.08149 1.90775 2.69859 2.90529 3.25045 3.32690 3.36809 3.45371 3.97860 4.10485 4.13855 4.33895 4.37940 4.56200 4.65135 4.68193 4.81609 4.92589 5.06427 5.12827 5.14461 5.21711 5.25056 5.38805 5.41893 5.46663 5.52275 5.60875 5.68298 5.70236 5.80254 6.12962 6.17794 6.21199 6.23318 6.24619 6.63960 6.77819 6.82993 6.91893 7.51898 7.62937 8.33648 8.81892 9.40694 10.93335 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014930 B = 0.003177 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.996870 B = 8811.543510 C = 9915.899393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.013 4.013 3 C 0.121 3.879 4 N -1.130 6.130 5 S 2.588 3.412 6 O -0.963 6.963 7 O -0.962 6.962 8 C -0.581 4.581 9 C -0.007 4.007 10 C -0.520 4.520 11 H 0.078 0.922 12 C 0.072 3.928 13 N -0.895 5.895 14 Si 0.869 3.131 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.262 1.262 18 C 0.496 3.504 19 O -0.511 6.511 20 O -0.503 6.503 21 C -0.076 4.076 22 C -0.110 4.110 23 C -0.117 4.117 24 C -0.116 4.116 25 C -0.113 4.113 26 C -0.106 4.106 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.414 0.586 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.033 0.967 36 H 0.029 0.971 37 H 0.267 0.733 38 H 0.411 0.589 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.128 0.872 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.485 -24.927 -2.287 25.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.015 4.015 3 C -0.006 4.006 4 N -0.889 5.889 5 S 2.685 3.315 6 O -0.954 6.954 7 O -0.952 6.952 8 C -0.715 4.715 9 C -0.047 4.047 10 C -0.559 4.559 11 H 0.096 0.904 12 C -0.131 4.131 13 N -0.533 5.533 14 Si 0.695 3.305 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.186 1.186 18 C 0.337 3.663 19 O -0.398 6.398 20 O -0.314 6.314 21 C -0.077 4.077 22 C -0.128 4.128 23 C -0.135 4.135 24 C -0.134 4.134 25 C -0.131 4.131 26 C -0.124 4.124 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.118 0.882 31 H 0.107 0.893 32 H 0.249 0.751 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.051 0.949 36 H 0.047 0.953 37 H 0.076 0.924 38 H 0.270 0.730 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.146 0.854 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.151 -24.475 -1.763 24.539 hybrid contribution 0.043 0.002 0.788 0.789 sum -0.108 -24.472 -0.976 24.492 Atomic orbital electron populations 1.21847 0.89601 1.03882 1.03773 1.19596 0.98188 0.94525 0.89221 1.21536 1.00928 0.89695 0.88401 1.55925 1.53139 1.41236 1.38608 1.05716 0.74517 0.74299 0.76952 1.93572 1.74774 1.82867 1.44151 1.93559 1.31229 1.83252 1.87126 1.30290 1.11574 1.12818 1.16798 1.19417 0.96266 0.89418 0.99573 1.20833 1.36125 0.93601 1.05326 0.90366 1.24982 0.95478 0.96601 0.96019 1.69877 1.45916 1.05288 1.32198 0.86929 0.81167 0.78574 0.83809 1.19646 1.20758 1.18622 1.23003 0.80341 0.76334 0.86591 1.90723 1.56971 1.45917 1.46231 1.84557 1.25641 1.72805 1.48367 1.19245 0.99408 0.94389 0.94684 1.20969 0.99963 0.93862 0.98055 1.21100 0.98113 0.99940 0.94350 1.21238 0.97999 0.94910 0.99261 1.21215 0.99580 0.94850 0.97428 1.21232 0.96501 1.00686 0.93992 0.91002 0.90823 0.90081 0.88238 0.89313 0.75088 0.85624 0.85283 0.94906 0.95308 0.92354 0.73040 0.86145 0.85876 0.85882 0.85383 0.84820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 7.41 37.16 0.28 -0.86 16 2 C -0.01 -0.12 0.57 -156.81 -0.09 -0.21 16 3 C 0.12 1.26 3.62 -4.05 -0.01 1.24 16 4 N -1.13 -13.78 5.37 -10.62 -0.06 -13.84 16 5 S 2.59 42.51 5.46 -107.50 -0.59 41.92 16 6 O -0.96 -18.76 18.08 -57.54 -1.04 -19.80 16 7 O -0.96 -18.20 17.50 -57.54 -1.01 -19.20 16 8 C -0.58 -10.05 6.01 37.16 0.22 -9.82 16 9 C -0.01 -0.17 4.05 -27.88 -0.11 -0.28 16 10 C -0.52 -14.18 9.66 -34.44 -0.33 -14.51 16 11 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 12 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 13 N -0.89 -26.66 13.96 55.43 0.77 -25.88 16 14 Si 0.87 21.21 27.47 -169.99 -4.67 16.54 16 15 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 18 C 0.50 5.55 6.04 36.00 0.22 5.77 16 19 O -0.51 -6.68 16.74 -18.75 -0.31 -6.99 16 20 O -0.50 -5.03 13.24 -39.27 -0.52 -5.55 16 21 C -0.08 -0.70 4.69 -104.62 -0.49 -1.19 16 22 C -0.11 -0.93 8.82 -39.58 -0.35 -1.28 16 23 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 24 C -0.12 -0.84 10.05 -39.58 -0.40 -1.24 16 25 C -0.11 -0.89 10.05 -39.58 -0.40 -1.29 16 26 C -0.11 -0.93 8.98 -39.58 -0.36 -1.29 16 27 H 0.07 0.59 7.35 -51.93 -0.38 0.20 16 28 H 0.07 0.64 6.56 -51.93 -0.34 0.30 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.10 1.08 7.04 -51.93 -0.37 0.71 16 31 H 0.09 0.71 7.51 -51.93 -0.39 0.32 16 32 H 0.41 4.61 6.91 -34.48 -0.24 4.37 16 33 H 0.13 1.88 8.14 -51.92 -0.42 1.46 16 34 H 0.13 2.01 8.14 -51.93 -0.42 1.59 16 35 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 36 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 37 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.41 2.44 9.10 45.56 0.41 2.86 16 39 H 0.12 0.94 7.58 -52.48 -0.40 0.55 16 40 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 41 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 43 H 0.13 1.05 5.90 -52.49 -0.31 0.74 16 LS Contribution 371.63 15.07 5.60 5.60 Total: -1.00 -37.07 371.63 -9.04 -46.10 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -4.90 Total: 5.40 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: -2.32 Total: -24.28 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.72 Total: -39.72 kcal Atomic # 8 Polarization: -48.67 SS G_CDS: -2.88 Total: -51.55 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Atomic # 16 Polarization: 42.51 SS G_CDS: -0.59 Total: 41.92 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.07 -9.04 -46.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593219938.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.583 kcal (2) G-P(sol) polarization free energy of solvation -37.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds