Wall clock time and date at job start Sat Apr 11 2020 06:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47321 * 2 1 4 4 N 1.46496 * 109.47217 * 60.00083 * 3 2 1 5 5 S 1.65606 * 120.00225 * 165.00115 * 4 3 2 6 6 O 1.42096 * 104.27627 * 181.07082 * 5 4 3 7 7 O 1.42101 * 104.27402 * 308.92670 * 5 4 3 8 8 C 1.81397 * 104.44733 * 65.00040 * 5 4 3 9 9 C 1.53001 * 109.46890 * 180.02562 * 8 5 4 10 10 C 1.50700 * 109.47085 * 179.97438 * 9 8 5 11 11 H 1.07995 * 120.00061 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99965 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99763 * 179.97438 * 12 10 9 14 14 Si 1.86794 * 119.99939 * 359.97438 * 12 10 9 15 15 H 1.48508 * 109.47091 * 90.00635 * 14 12 10 16 16 H 1.48499 * 109.47338 * 210.00151 * 14 12 10 17 17 H 1.48493 * 109.47466 * 330.00445 * 14 12 10 18 18 C 1.50697 * 109.47138 * 119.99943 * 2 1 3 19 19 O 1.20827 * 119.99969 * 0.02562 * 18 2 1 20 20 O 1.34233 * 120.00061 * 179.97438 * 18 2 1 21 21 C 1.50706 * 109.47313 * 239.99977 * 2 1 3 22 22 C 1.38237 * 119.99744 * 300.00581 * 21 2 1 23 23 C 1.38235 * 119.99712 * 180.02562 * 22 21 2 24 24 C 1.38234 * 120.00220 * 359.94731 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00223 * 120.01792 * 21 2 1 27 27 H 1.08995 * 109.47023 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46677 * 299.99918 * 1 2 3 29 29 H 1.09000 * 109.46795 * 59.99709 * 1 2 3 30 30 H 1.09001 * 109.47464 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47424 * 299.99906 * 3 2 1 32 32 H 0.97002 * 119.99895 * 344.99994 * 4 3 2 33 33 H 1.09004 * 109.47140 * 299.99395 * 8 5 4 34 34 H 1.08992 * 109.47705 * 60.00130 * 8 5 4 35 35 H 1.08992 * 109.47135 * 300.00059 * 9 8 5 36 36 H 1.08999 * 109.47071 * 60.00206 * 9 8 5 37 37 H 0.97001 * 119.99891 * 179.97438 * 13 12 10 38 38 H 0.96702 * 117.00104 * 180.02562 * 20 18 2 39 39 H 1.08005 * 120.00088 * 359.97438 * 22 21 2 40 40 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 41 41 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 42 42 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 43 43 H 1.07998 * 119.99975 * 0.02562 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.5518 2.1331 1.1961 5 16 2.2319 3.5707 1.6579 6 8 1.5366 3.9215 2.8464 7 8 3.6283 3.3077 1.6766 8 6 1.8182 4.7188 0.3159 9 6 2.3990 6.0994 0.6287 10 6 2.0558 7.0531 -0.4865 11 1 1.4813 6.7089 -1.3338 12 6 2.4762 8.3648 -0.4257 13 7 2.1771 9.1970 -1.3991 14 14 3.4704 8.9599 1.0395 15 1 4.9175 8.7692 0.7660 16 1 3.1963 10.4009 1.2714 17 1 3.0879 8.1830 2.2457 18 6 2.0323 -0.7104 1.2304 19 8 1.2472 -1.1700 2.0256 20 8 3.3521 -0.8335 1.4426 21 6 2.0324 -0.7104 -1.2305 22 6 1.6984 -2.0339 -1.4493 23 6 2.1596 -2.6857 -2.5777 24 6 2.9540 -2.0138 -3.4878 25 6 3.2921 -0.6918 -3.2666 26 6 2.8275 -0.0388 -2.1402 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 3.1301 1.4425 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 0.8301 1.7483 1.7177 33 1 2.2398 4.3512 -0.6197 34 1 0.7348 4.7929 0.2220 35 1 1.9779 6.4672 1.5643 36 1 3.4824 6.0250 0.7221 37 1 2.4725 10.1199 -1.3561 38 1 3.6263 -1.2974 2.2455 39 1 1.0777 -2.5588 -0.7382 40 1 1.8990 -3.7197 -2.7484 41 1 3.3140 -2.5230 -4.3696 42 1 3.9163 -0.1681 -3.9754 43 1 3.0889 0.9950 -1.9690 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593219938.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:49 Heat of formation + Delta-G solvation = -171.297774 kcal Electronic energy + Delta-G solvation = -28004.707361 eV Core-core repulsion = 23947.685094 eV Total energy + Delta-G solvation = -4057.022268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.04840 -40.04994 -38.23927 -37.67341 -37.14828 -37.03512 -35.87362 -34.14773 -33.45270 -31.90405 -30.32198 -27.86799 -27.66198 -25.69761 -23.50423 -23.16291 -23.09906 -20.88836 -20.47124 -19.43713 -19.16508 -18.69939 -18.32173 -17.53193 -17.19134 -17.04421 -16.62780 -16.36598 -16.08641 -15.69124 -15.45509 -15.32903 -15.09474 -14.81802 -14.65568 -14.22008 -14.13885 -13.77603 -13.70737 -13.26916 -13.20777 -13.17588 -13.05751 -13.05073 -12.93084 -12.92716 -12.59640 -12.53755 -12.21727 -12.08824 -11.93941 -11.76891 -11.68347 -11.55833 -11.31337 -10.81946 -10.51482 -9.81602 -9.70924 -8.34189 -6.39316 -0.75700 0.33998 0.49818 1.06857 1.33464 1.36132 1.45374 1.70538 2.01391 2.31412 2.72530 2.86531 3.00194 3.17365 3.35309 3.42413 3.69714 3.89309 4.06255 4.09183 4.14043 4.21257 4.29342 4.33793 4.47809 4.58451 4.60874 4.65203 4.68759 4.80649 4.88143 5.03968 5.09826 5.14066 5.14355 5.16352 5.49752 5.51319 5.55712 5.58523 5.64728 5.89444 6.08470 6.19337 6.67222 6.88642 7.25090 8.81111 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014930 B = 0.003177 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.996870 B = 8811.543510 C = 9915.899393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.008 4.008 3 C 0.109 3.891 4 N -1.116 6.116 5 S 2.618 3.382 6 O -0.994 6.994 7 O -0.985 6.985 8 C -0.584 4.584 9 C -0.019 4.019 10 C -0.524 4.524 11 H 0.054 0.946 12 C 0.014 3.986 13 N -0.939 5.939 14 Si 0.922 3.078 15 H -0.260 1.260 16 H -0.277 1.277 17 H -0.251 1.251 18 C 0.493 3.507 19 O -0.535 6.535 20 O -0.508 6.508 21 C -0.085 4.085 22 C -0.120 4.120 23 C -0.121 4.121 24 C -0.119 4.119 25 C -0.122 4.122 26 C -0.121 4.121 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.117 0.883 32 H 0.422 0.578 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.030 0.970 36 H 0.033 0.967 37 H 0.269 0.731 38 H 0.425 0.575 39 H 0.122 0.878 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.061 -26.404 -2.425 26.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.010 4.010 3 C -0.017 4.017 4 N -0.878 5.878 5 S 2.715 3.285 6 O -0.984 6.984 7 O -0.975 6.975 8 C -0.716 4.716 9 C -0.058 4.058 10 C -0.563 4.563 11 H 0.072 0.928 12 C -0.184 4.184 13 N -0.579 5.579 14 Si 0.745 3.255 15 H -0.185 1.185 16 H -0.202 1.202 17 H -0.174 1.174 18 C 0.336 3.664 19 O -0.425 6.425 20 O -0.320 6.320 21 C -0.086 4.086 22 C -0.138 4.138 23 C -0.139 4.139 24 C -0.137 4.137 25 C -0.139 4.139 26 C -0.139 4.139 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.135 0.865 32 H 0.259 0.741 33 H 0.167 0.833 34 H 0.164 0.836 35 H 0.048 0.952 36 H 0.051 0.949 37 H 0.078 0.922 38 H 0.287 0.713 39 H 0.139 0.861 40 H 0.160 0.840 41 H 0.162 0.838 42 H 0.160 0.840 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.284 -25.962 -1.892 26.033 hybrid contribution -0.099 0.328 0.743 0.818 sum 0.186 -25.634 -1.149 25.660 Atomic orbital electron populations 1.21900 0.88880 1.04213 1.04299 1.19590 0.98765 0.93723 0.88960 1.21855 1.01041 0.90421 0.88352 1.55489 1.53172 1.39648 1.39486 1.04579 0.73639 0.74487 0.75824 1.93528 1.75271 1.83845 1.45798 1.93528 1.32929 1.83797 1.87273 1.30257 1.12606 1.10172 1.18601 1.19390 0.96887 0.91701 0.97843 1.21170 1.34927 0.94474 1.05712 0.92811 1.25835 0.96842 0.97077 0.98677 1.70001 1.47778 1.05815 1.34332 0.86069 0.80165 0.78373 0.80893 1.18488 1.20195 1.17436 1.23367 0.80370 0.75923 0.86717 1.90710 1.57518 1.47100 1.47171 1.84535 1.25195 1.72877 1.49432 1.19225 1.00086 0.94730 0.94535 1.21088 1.00312 0.93823 0.98625 1.21382 0.97706 1.00902 0.93892 1.21547 0.97481 0.94816 0.99847 1.21480 0.99656 0.95344 0.97464 1.21403 0.96818 1.01195 0.94434 0.90875 0.91193 0.88574 0.88530 0.86538 0.74148 0.83272 0.83641 0.95183 0.94894 0.92192 0.71312 0.86051 0.83985 0.83800 0.84000 0.84286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 7.41 71.98 0.53 -1.56 16 2 C -0.01 -0.14 0.57 -53.67 -0.03 -0.17 16 3 C 0.11 2.04 3.62 86.38 0.31 2.35 16 4 N -1.12 -25.15 5.37 -187.50 -1.01 -26.16 16 5 S 2.62 81.78 5.46 -56.49 -0.31 81.47 16 6 O -0.99 -37.52 18.08 -127.65 -2.31 -39.82 16 7 O -0.99 -35.78 17.50 -127.65 -2.23 -38.02 16 8 C -0.58 -19.15 6.01 71.98 0.43 -18.71 16 9 C -0.02 -0.86 4.05 29.85 0.12 -0.74 16 10 C -0.52 -28.57 9.66 25.60 0.25 -28.32 16 11 H 0.05 3.10 7.99 -2.91 -0.02 3.08 16 12 C 0.01 0.81 5.47 84.66 0.46 1.27 16 13 N -0.94 -56.70 13.96 21.45 0.30 -56.40 16 14 Si 0.92 43.11 27.47 68.60 1.88 45.00 16 15 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 17 H -0.25 -11.16 6.54 99.48 0.65 -10.51 16 18 C 0.49 10.51 6.04 71.23 0.43 10.95 16 19 O -0.54 -13.62 16.74 21.96 0.37 -13.25 16 20 O -0.51 -9.60 13.24 -51.44 -0.68 -10.29 16 21 C -0.08 -1.41 4.69 -19.86 -0.09 -1.50 16 22 C -0.12 -1.85 8.82 22.27 0.20 -1.66 16 23 C -0.12 -1.55 10.05 22.27 0.22 -1.33 16 24 C -0.12 -1.46 10.05 22.27 0.22 -1.24 16 25 C -0.12 -1.68 10.05 22.27 0.22 -1.45 16 26 C -0.12 -1.90 8.98 22.27 0.20 -1.70 16 27 H 0.07 1.10 7.35 -2.39 -0.02 1.09 16 28 H 0.07 1.12 6.56 -2.39 -0.02 1.10 16 29 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.10 1.91 7.04 -2.39 -0.02 1.90 16 31 H 0.12 1.55 7.51 -2.39 -0.02 1.53 16 32 H 0.42 8.69 6.91 -96.74 -0.67 8.02 16 33 H 0.15 4.12 8.14 -2.39 -0.02 4.10 16 34 H 0.15 4.26 8.14 -2.39 -0.02 4.24 16 35 H 0.03 1.36 7.20 -2.39 -0.02 1.34 16 36 H 0.03 1.44 7.57 -2.39 -0.02 1.43 16 37 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 38 H 0.43 4.67 9.10 -74.06 -0.67 3.99 16 39 H 0.12 1.77 7.58 -2.91 -0.02 1.75 16 40 H 0.14 1.20 8.06 -2.91 -0.02 1.17 16 41 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 42 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 43 H 0.14 1.92 5.90 -2.91 -0.02 1.90 16 Total: -1.00 -79.05 371.63 -0.85 -79.90 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -0.34 Total: 21.38 kcal Atomic # 6 Polarization: -47.29 SS G_CDS: 3.48 Total: -43.80 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -0.71 Total: -82.57 kcal Atomic # 8 Polarization: -96.52 SS G_CDS: -4.86 Total: -101.38 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.88 Total: 45.00 kcal Atomic # 16 Polarization: 81.78 SS G_CDS: -0.31 Total: 81.47 kcal Total: -79.05 -0.85 -79.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593219938.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.397 kcal (2) G-P(sol) polarization free energy of solvation -79.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds