Wall clock time and date at job start Sat Apr 11 2020 06:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47052 * 2 1 4 4 N 1.46495 * 109.46973 * 299.99837 * 3 2 1 5 5 S 1.65608 * 119.99695 * 165.00079 * 4 3 2 6 6 O 1.42102 * 104.27363 * 181.06921 * 5 4 3 7 7 O 1.42097 * 104.27711 * 308.92535 * 5 4 3 8 8 C 1.81401 * 104.44945 * 64.99881 * 5 4 3 9 9 C 1.52998 * 109.46866 * 179.97438 * 8 5 4 10 10 C 1.50701 * 109.46802 * 179.97438 * 9 8 5 11 11 H 1.08008 * 120.00279 * 0.02562 * 10 9 8 12 12 C 1.37882 * 120.00102 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99722 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00187 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47064 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.46991 * 119.99857 * 14 12 10 17 17 H 1.48502 * 109.47212 * 239.99901 * 14 12 10 18 18 C 1.50693 * 109.47282 * 239.99859 * 2 1 3 19 19 O 1.20822 * 119.99994 * 359.97438 * 18 2 1 20 20 O 1.34235 * 119.99827 * 180.02562 * 18 2 1 21 21 C 1.50710 * 109.46885 * 119.99853 * 2 1 3 22 22 C 1.38237 * 119.99707 * 239.72789 * 21 2 1 23 23 C 1.38232 * 119.99372 * 179.79056 * 22 21 2 24 24 C 1.38234 * 120.00209 * 0.43968 * 23 22 21 25 25 C 1.38227 * 120.00027 * 359.81157 * 24 23 22 26 26 C 1.38233 * 119.99631 * 60.00310 * 21 2 1 27 27 H 1.08996 * 109.46920 * 59.99938 * 1 2 3 28 28 H 1.09003 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47334 * 300.00051 * 1 2 3 30 30 H 1.09000 * 109.46855 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47079 * 60.00238 * 3 2 1 32 32 H 0.96999 * 120.00130 * 344.99842 * 4 3 2 33 33 H 1.08996 * 109.47000 * 300.00248 * 8 5 4 34 34 H 1.09006 * 109.46904 * 59.99979 * 8 5 4 35 35 H 1.08993 * 109.47317 * 300.00064 * 9 8 5 36 36 H 1.08998 * 109.47275 * 60.00757 * 9 8 5 37 37 H 0.96992 * 119.99792 * 180.02562 * 13 12 10 38 38 H 0.96702 * 116.99793 * 179.97438 * 20 18 2 39 39 H 1.07998 * 120.00314 * 0.02562 * 22 21 2 40 40 H 1.08001 * 119.99552 * 180.27329 * 23 22 21 41 41 H 1.08004 * 119.99936 * 179.84082 * 24 23 22 42 42 H 1.08003 * 120.00200 * 180.02562 * 25 24 23 43 43 H 1.07994 * 120.00598 * 359.97438 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5517 2.1331 -1.1962 5 16 1.6257 3.7850 -1.2867 6 8 1.0525 4.0927 -2.5501 7 8 1.0210 4.2295 -0.0801 8 6 3.4006 4.1594 -1.2849 9 6 3.6024 5.6738 -1.3668 10 6 5.0770 5.9848 -1.3647 11 1 5.7981 5.1826 -1.3107 12 6 5.5056 7.2937 -1.4316 13 7 4.6275 8.2706 -1.4968 14 14 7.3333 7.6792 -1.4296 15 1 8.1061 6.4136 -1.3504 16 1 7.6889 8.3983 -2.6794 17 1 7.6581 8.5322 -0.2582 18 6 2.0324 -0.7104 -1.2304 19 8 1.2473 -1.1700 -2.0255 20 8 3.3522 -0.8335 -1.4425 21 6 2.0323 -0.7104 1.2306 22 6 2.8317 -0.0402 2.1377 23 6 3.2888 -0.6906 3.2685 24 6 2.9541 -2.0138 3.4877 25 6 2.1591 -2.6854 2.5781 26 6 1.6984 -2.0339 1.4492 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 0.8900 32 1 1.1851 1.6227 -1.9351 33 1 3.8507 3.7816 -0.3668 34 1 3.8733 3.6832 -2.1439 35 1 3.1525 6.0511 -2.2850 36 1 3.1298 6.1503 -0.5080 37 1 4.9290 9.1912 -1.5443 38 1 3.6264 -1.2975 -2.2454 39 1 3.0959 0.9926 1.9647 40 1 3.9097 -0.1657 3.9794 41 1 3.3134 -2.5227 4.3700 42 1 1.8972 -3.7191 2.7495 43 1 1.0772 -2.5586 0.7386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593219939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:53 Heat of formation + Delta-G solvation = -148.544112 kcal Electronic energy + Delta-G solvation = -27952.659537 eV Core-core repulsion = 23896.623942 eV Total energy + Delta-G solvation = -4056.035595 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.28577 -39.38449 -36.95344 -36.57932 -36.26813 -35.48462 -33.92012 -33.26516 -31.31515 -31.18983 -29.65623 -26.81221 -25.62708 -24.90961 -22.83301 -22.46507 -21.70836 -20.15250 -19.17533 -18.33002 -17.82715 -17.35516 -16.94762 -16.51791 -16.12068 -15.65608 -15.49342 -15.09113 -14.99954 -14.69984 -14.55905 -14.29471 -13.95166 -13.61826 -13.44111 -13.14198 -13.04578 -12.55363 -12.46976 -12.29067 -12.07144 -11.78942 -11.77389 -11.70101 -11.63944 -11.55993 -11.36981 -11.11529 -11.07251 -10.98487 -10.74712 -10.43749 -10.41556 -9.86549 -9.57387 -9.22648 -9.10093 -9.07950 -8.52543 -6.14445 -4.20028 0.71544 0.94728 1.08976 1.86868 2.68164 3.02744 3.24026 3.31486 3.34692 3.46417 4.05447 4.12807 4.22022 4.35884 4.44466 4.64904 4.68126 4.69167 4.82519 4.93995 5.12397 5.15995 5.20975 5.27552 5.31719 5.43935 5.50078 5.59090 5.61722 5.64257 5.71233 5.80076 5.89308 6.14028 6.19146 6.20993 6.21916 6.44820 6.64823 6.89086 7.27649 7.33361 7.59699 7.78770 8.15106 8.83671 9.44946 10.96628 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012985 B = 0.003147 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.825419 B = 8895.435769 C = 9853.326219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.012 4.012 3 C 0.122 3.878 4 N -1.131 6.131 5 S 2.592 3.408 6 O -0.963 6.963 7 O -0.963 6.963 8 C -0.588 4.588 9 C 0.027 3.973 10 C -0.520 4.520 11 H 0.062 0.938 12 C 0.057 3.943 13 N -0.890 5.890 14 Si 0.900 3.100 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.493 3.507 19 O -0.508 6.508 20 O -0.505 6.505 21 C -0.076 4.076 22 C -0.106 4.106 23 C -0.113 4.113 24 C -0.116 4.116 25 C -0.117 4.117 26 C -0.110 4.110 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.412 0.588 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.265 0.735 38 H 0.411 0.589 39 H 0.134 0.866 40 H 0.128 0.872 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.932 -23.216 7.574 24.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.015 4.015 3 C -0.004 4.004 4 N -0.888 5.888 5 S 2.689 3.311 6 O -0.954 6.954 7 O -0.953 6.953 8 C -0.722 4.722 9 C -0.012 4.012 10 C -0.559 4.559 11 H 0.081 0.919 12 C -0.145 4.145 13 N -0.528 5.528 14 Si 0.727 3.273 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.208 1.208 18 C 0.334 3.666 19 O -0.395 6.395 20 O -0.316 6.316 21 C -0.077 4.077 22 C -0.124 4.124 23 C -0.131 4.131 24 C -0.134 4.134 25 C -0.135 4.135 26 C -0.128 4.128 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.120 0.880 32 H 0.245 0.755 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.270 0.730 39 H 0.152 0.848 40 H 0.146 0.854 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.010 -22.283 7.817 24.140 hybrid contribution 1.696 -0.571 -0.898 2.002 sum -3.314 -22.853 6.919 24.107 Atomic orbital electron populations 1.21828 0.89494 1.03530 1.04110 1.19613 0.98347 0.94483 0.89050 1.21516 0.99658 0.90011 0.89241 1.55954 1.79419 1.27705 1.25766 1.05649 0.79320 0.71865 0.74227 1.93566 1.76771 1.81833 1.43217 1.93543 1.74814 1.79234 1.47701 1.30444 1.20620 1.10930 1.10196 1.18976 0.99940 0.83334 0.98914 1.21036 0.90637 0.92360 1.51894 0.91949 1.25073 0.98227 0.96309 0.94902 1.69963 1.33718 0.99684 1.49436 0.86416 0.84641 0.78461 0.77776 1.19628 1.20815 1.20782 1.23090 0.80298 0.76546 0.86662 1.90736 1.56944 1.45665 1.46176 1.84555 1.25684 1.72861 1.48482 1.19258 0.99242 0.94358 0.94799 1.21237 0.96502 1.00678 0.93986 1.21209 0.99684 0.94844 0.97375 1.21231 0.98041 0.94889 0.99280 1.21098 0.98103 0.99953 0.94366 1.20971 0.99947 0.93864 0.98064 0.90674 0.91224 0.90195 0.89752 0.88020 0.75460 0.86202 0.85986 0.94815 0.94743 0.92565 0.73000 0.84805 0.85417 0.85904 0.85888 0.86145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 7.41 37.16 0.28 -1.02 16 2 C -0.01 -0.12 0.57 -156.81 -0.09 -0.21 16 3 C 0.12 1.33 3.62 -4.04 -0.01 1.31 16 4 N -1.13 -14.51 5.22 -10.61 -0.06 -14.57 16 5 S 2.59 44.86 5.46 -107.50 -0.59 44.27 16 6 O -0.96 -19.83 18.08 -57.54 -1.04 -20.87 16 7 O -0.96 -19.00 17.50 -57.54 -1.01 -20.01 16 8 C -0.59 -10.80 6.01 37.16 0.22 -10.58 16 9 C 0.03 0.68 4.98 -27.88 -0.14 0.55 16 10 C -0.52 -14.10 9.11 -34.44 -0.31 -14.42 16 11 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 14 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 15 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 C 0.49 5.24 5.62 36.00 0.20 5.45 16 19 O -0.51 -6.47 16.74 -18.75 -0.31 -6.78 16 20 O -0.50 -4.45 13.24 -39.27 -0.52 -4.97 16 21 C -0.08 -0.70 4.69 -104.62 -0.49 -1.20 16 22 C -0.11 -0.95 8.98 -39.58 -0.36 -1.30 16 23 C -0.11 -0.90 10.05 -39.58 -0.40 -1.30 16 24 C -0.12 -0.85 10.05 -39.59 -0.40 -1.25 16 25 C -0.12 -0.88 10.05 -39.59 -0.40 -1.28 16 26 C -0.11 -0.95 8.82 -39.58 -0.35 -1.30 16 27 H 0.07 0.79 7.15 -51.93 -0.37 0.42 16 28 H 0.07 0.62 7.35 -51.93 -0.38 0.24 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.80 7.47 -51.93 -0.39 0.41 16 31 H 0.10 1.05 7.08 -51.93 -0.37 0.69 16 32 H 0.41 4.96 7.30 -34.48 -0.25 4.71 16 33 H 0.12 1.90 8.14 -51.93 -0.42 1.48 16 34 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 35 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.41 1.99 9.10 45.56 0.41 2.41 16 39 H 0.13 1.07 5.90 -52.49 -0.31 0.76 16 40 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 42 H 0.12 0.68 8.06 -52.48 -0.42 0.25 16 43 H 0.12 0.97 7.58 -52.49 -0.40 0.57 16 LS Contribution 375.64 15.07 5.66 5.66 Total: -1.00 -36.78 375.64 -9.46 -46.24 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -4.98 Total: 5.60 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: -2.34 Total: -25.04 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.68 Total: -40.01 kcal Atomic # 8 Polarization: -49.75 SS G_CDS: -2.88 Total: -52.63 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 44.86 SS G_CDS: -0.59 Total: 44.27 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.78 -9.46 -46.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593219939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.300 kcal (2) G-P(sol) polarization free energy of solvation -36.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds