Wall clock time and date at job start Sat Apr 11 2020 06:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47052 * 2 1 4 4 N 1.46495 * 109.46973 * 299.99837 * 3 2 1 5 5 S 1.65608 * 119.99695 * 165.00079 * 4 3 2 6 6 O 1.42102 * 104.27363 * 181.06921 * 5 4 3 7 7 O 1.42097 * 104.27711 * 308.92535 * 5 4 3 8 8 C 1.81401 * 104.44945 * 64.99881 * 5 4 3 9 9 C 1.52998 * 109.46866 * 179.97438 * 8 5 4 10 10 C 1.50701 * 109.46802 * 179.97438 * 9 8 5 11 11 H 1.08008 * 120.00279 * 0.02562 * 10 9 8 12 12 C 1.37882 * 120.00102 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99722 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00187 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47064 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.46991 * 119.99857 * 14 12 10 17 17 H 1.48502 * 109.47212 * 239.99901 * 14 12 10 18 18 C 1.50693 * 109.47282 * 239.99859 * 2 1 3 19 19 O 1.20822 * 119.99994 * 359.97438 * 18 2 1 20 20 O 1.34235 * 119.99827 * 180.02562 * 18 2 1 21 21 C 1.50710 * 109.46885 * 119.99853 * 2 1 3 22 22 C 1.38237 * 119.99707 * 239.72789 * 21 2 1 23 23 C 1.38232 * 119.99372 * 179.79056 * 22 21 2 24 24 C 1.38234 * 120.00209 * 0.43968 * 23 22 21 25 25 C 1.38227 * 120.00027 * 359.81157 * 24 23 22 26 26 C 1.38233 * 119.99631 * 60.00310 * 21 2 1 27 27 H 1.08996 * 109.46920 * 59.99938 * 1 2 3 28 28 H 1.09003 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47334 * 300.00051 * 1 2 3 30 30 H 1.09000 * 109.46855 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47079 * 60.00238 * 3 2 1 32 32 H 0.96999 * 120.00130 * 344.99842 * 4 3 2 33 33 H 1.08996 * 109.47000 * 300.00248 * 8 5 4 34 34 H 1.09006 * 109.46904 * 59.99979 * 8 5 4 35 35 H 1.08993 * 109.47317 * 300.00064 * 9 8 5 36 36 H 1.08998 * 109.47275 * 60.00757 * 9 8 5 37 37 H 0.96992 * 119.99792 * 180.02562 * 13 12 10 38 38 H 0.96702 * 116.99793 * 179.97438 * 20 18 2 39 39 H 1.07998 * 120.00314 * 0.02562 * 22 21 2 40 40 H 1.08001 * 119.99552 * 180.27329 * 23 22 21 41 41 H 1.08004 * 119.99936 * 179.84082 * 24 23 22 42 42 H 1.08003 * 120.00200 * 180.02562 * 25 24 23 43 43 H 1.07994 * 120.00598 * 359.97438 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5517 2.1331 -1.1962 5 16 1.6257 3.7850 -1.2867 6 8 1.0525 4.0927 -2.5501 7 8 1.0210 4.2295 -0.0801 8 6 3.4006 4.1594 -1.2849 9 6 3.6024 5.6738 -1.3668 10 6 5.0770 5.9848 -1.3647 11 1 5.7981 5.1826 -1.3107 12 6 5.5056 7.2937 -1.4316 13 7 4.6275 8.2706 -1.4968 14 14 7.3333 7.6792 -1.4296 15 1 8.1061 6.4136 -1.3504 16 1 7.6889 8.3983 -2.6794 17 1 7.6581 8.5322 -0.2582 18 6 2.0324 -0.7104 -1.2304 19 8 1.2473 -1.1700 -2.0255 20 8 3.3522 -0.8335 -1.4425 21 6 2.0323 -0.7104 1.2306 22 6 2.8317 -0.0402 2.1377 23 6 3.2888 -0.6906 3.2685 24 6 2.9541 -2.0138 3.4877 25 6 2.1591 -2.6854 2.5781 26 6 1.6984 -2.0339 1.4492 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 0.8900 32 1 1.1851 1.6227 -1.9351 33 1 3.8507 3.7816 -0.3668 34 1 3.8733 3.6832 -2.1439 35 1 3.1525 6.0511 -2.2850 36 1 3.1298 6.1503 -0.5080 37 1 4.9290 9.1912 -1.5443 38 1 3.6264 -1.2975 -2.2454 39 1 3.0959 0.9926 1.9647 40 1 3.9097 -0.1657 3.9794 41 1 3.3134 -2.5227 4.3700 42 1 1.8972 -3.7191 2.7495 43 1 1.0772 -2.5586 0.7386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593219939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:52 Heat of formation + Delta-G solvation = -175.502412 kcal Electronic energy + Delta-G solvation = -27953.828537 eV Core-core repulsion = 23896.623942 eV Total energy + Delta-G solvation = -4057.204594 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.05528 -40.04428 -38.22341 -37.63407 -37.12393 -37.00625 -35.87714 -34.16722 -33.11196 -31.90088 -30.32931 -27.65343 -27.56081 -25.71697 -23.63017 -23.44396 -23.09432 -20.91352 -20.44481 -19.21112 -19.12406 -18.47863 -18.21090 -17.51874 -17.26135 -17.01259 -16.63340 -16.47789 -16.02873 -15.76110 -15.55839 -15.10636 -15.05000 -14.71702 -14.47204 -14.21714 -13.97683 -13.74847 -13.69119 -13.23936 -13.18678 -13.17075 -13.10306 -12.98244 -12.93987 -12.76167 -12.60305 -12.57531 -12.23734 -12.11263 -12.04517 -11.77864 -11.71957 -11.52503 -11.18899 -10.63641 -10.49064 -9.81361 -9.70784 -8.24268 -6.37761 -0.72557 0.34138 0.50122 1.06066 1.42962 1.43282 1.56518 1.75282 2.00261 2.39649 2.77528 2.86513 3.09674 3.18203 3.34365 3.43560 3.68606 3.98048 4.07107 4.12306 4.15099 4.22135 4.30962 4.35718 4.47598 4.58851 4.63390 4.66944 4.78490 4.80466 4.86312 5.03800 5.13194 5.15602 5.29501 5.30879 5.51911 5.56029 5.58652 5.64863 5.70862 5.85457 6.08227 6.08790 6.76460 6.91137 7.32480 8.88203 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012985 B = 0.003147 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.825419 B = 8895.435769 C = 9853.326219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.007 4.007 3 C 0.110 3.890 4 N -1.115 6.115 5 S 2.621 3.379 6 O -0.999 6.999 7 O -0.988 6.988 8 C -0.586 4.586 9 C 0.019 3.981 10 C -0.536 4.536 11 H 0.078 0.922 12 C -0.004 4.004 13 N -0.935 5.935 14 Si 0.973 3.027 15 H -0.254 1.254 16 H -0.281 1.281 17 H -0.278 1.278 18 C 0.495 3.505 19 O -0.534 6.534 20 O -0.503 6.503 21 C -0.085 4.085 22 C -0.121 4.121 23 C -0.121 4.121 24 C -0.119 4.119 25 C -0.121 4.121 26 C -0.121 4.121 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.418 0.582 33 H 0.149 0.851 34 H 0.143 0.857 35 H 0.005 0.995 36 H 0.010 0.990 37 H 0.267 0.733 38 H 0.428 0.572 39 H 0.139 0.861 40 H 0.143 0.857 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.141 -25.284 8.654 26.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.010 4.010 3 C -0.015 4.015 4 N -0.875 5.875 5 S 2.718 3.282 6 O -0.989 6.989 7 O -0.978 6.978 8 C -0.718 4.718 9 C -0.020 4.020 10 C -0.575 4.575 11 H 0.096 0.904 12 C -0.203 4.203 13 N -0.574 5.574 14 Si 0.797 3.203 15 H -0.178 1.178 16 H -0.207 1.207 17 H -0.204 1.204 18 C 0.338 3.662 19 O -0.423 6.423 20 O -0.316 6.316 21 C -0.086 4.086 22 C -0.138 4.138 23 C -0.139 4.139 24 C -0.137 4.137 25 C -0.139 4.139 26 C -0.139 4.139 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.254 0.746 33 H 0.167 0.833 34 H 0.161 0.839 35 H 0.023 0.977 36 H 0.029 0.971 37 H 0.075 0.925 38 H 0.290 0.710 39 H 0.157 0.843 40 H 0.161 0.839 41 H 0.163 0.837 42 H 0.160 0.840 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.197 -24.369 8.891 26.137 hybrid contribution 1.120 -0.032 -1.192 1.637 sum -2.076 -24.402 7.698 25.671 Atomic orbital electron populations 1.21858 0.89712 1.03868 1.03831 1.19540 0.98266 0.93761 0.89446 1.21847 1.00962 0.90462 0.88273 1.55459 1.79277 1.25917 1.26866 1.04514 0.78332 0.72582 0.72804 1.93513 1.77369 1.83192 1.44843 1.93508 1.75156 1.80507 1.48595 1.30329 1.22312 1.06448 1.12758 1.18838 0.98932 0.87766 0.96454 1.21552 0.91930 0.92969 1.51014 0.90422 1.26107 1.03352 0.96322 0.94494 1.70107 1.36254 1.00191 1.50884 0.85280 0.78589 0.78786 0.77682 1.17788 1.20674 1.20376 1.23190 0.80575 0.76049 0.86381 1.90730 1.57652 1.46912 1.47038 1.84517 1.24612 1.72840 1.49599 1.19218 1.00017 0.94709 0.94635 1.21405 0.96859 1.01131 0.94454 1.21479 0.99716 0.95322 0.97348 1.21550 0.97457 0.94793 0.99851 1.21382 0.97679 1.00930 0.93869 1.21084 1.00298 0.93792 0.98687 0.91736 0.90668 0.89633 0.87777 0.87420 0.74618 0.83265 0.83917 0.97703 0.97142 0.92459 0.71044 0.84305 0.83906 0.83737 0.83962 0.86081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 7.41 71.98 0.53 -2.01 16 2 C -0.01 -0.14 0.57 -53.67 -0.03 -0.17 16 3 C 0.11 2.19 3.62 86.38 0.31 2.51 16 4 N -1.11 -27.26 5.22 -187.49 -0.98 -28.24 16 5 S 2.62 89.99 5.46 -56.49 -0.31 89.69 16 6 O -1.00 -41.59 18.08 -127.65 -2.31 -43.90 16 7 O -0.99 -38.98 17.50 -127.65 -2.23 -41.21 16 8 C -0.59 -20.91 6.01 71.98 0.43 -20.48 16 9 C 0.02 0.97 4.98 29.85 0.15 1.12 16 10 C -0.54 -28.91 9.11 25.60 0.23 -28.67 16 11 H 0.08 3.84 7.74 -2.91 -0.02 3.82 16 12 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 13 N -0.93 -56.19 13.29 21.45 0.28 -55.90 16 14 Si 0.97 42.52 29.54 68.60 2.03 44.55 16 15 H -0.25 -10.30 7.11 99.48 0.71 -9.59 16 16 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 17 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 18 C 0.50 9.83 5.62 71.23 0.40 10.23 16 19 O -0.53 -13.12 16.74 21.97 0.37 -12.75 16 20 O -0.50 -7.82 13.24 -51.47 -0.68 -8.50 16 21 C -0.08 -1.44 4.69 -19.86 -0.09 -1.53 16 22 C -0.12 -1.92 8.98 22.27 0.20 -1.72 16 23 C -0.12 -1.64 10.05 22.27 0.22 -1.42 16 24 C -0.12 -1.43 10.05 22.27 0.22 -1.21 16 25 C -0.12 -1.55 10.05 22.27 0.22 -1.32 16 26 C -0.12 -1.88 8.82 22.27 0.20 -1.68 16 27 H 0.06 1.33 7.15 -2.39 -0.02 1.31 16 28 H 0.07 1.30 7.35 -2.39 -0.02 1.28 16 29 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.10 1.69 7.47 -2.39 -0.02 1.67 16 31 H 0.11 2.06 7.08 -2.39 -0.02 2.04 16 32 H 0.42 9.65 7.30 -96.74 -0.71 8.95 16 33 H 0.15 4.39 8.14 -2.39 -0.02 4.37 16 34 H 0.14 4.48 8.14 -2.39 -0.02 4.47 16 35 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 38 H 0.43 3.27 9.10 -74.06 -0.67 2.59 16 39 H 0.14 1.95 5.90 -2.91 -0.02 1.93 16 40 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 41 H 0.14 1.05 8.06 -2.91 -0.02 1.03 16 42 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 43 H 0.12 1.80 7.58 -2.91 -0.02 1.78 16 Total: -1.00 -79.68 375.64 -0.69 -80.37 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -0.33 Total: 22.03 kcal Atomic # 6 Polarization: -49.61 SS G_CDS: 3.47 Total: -46.14 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -0.69 Total: -84.14 kcal Atomic # 8 Polarization: -101.50 SS G_CDS: -4.86 Total: -106.36 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 16 Polarization: 89.99 SS G_CDS: -0.31 Total: 89.69 kcal Total: -79.68 -0.69 -80.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593219939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.128 kcal (2) G-P(sol) polarization free energy of solvation -79.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds