Wall clock time and date at job start Sat Apr 11 2020 06:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47027 * 2 1 4 4 C 1.50702 * 109.46821 * 119.99323 * 2 1 3 5 5 H 1.08003 * 119.99668 * 120.00676 * 4 2 1 6 6 C 1.37873 * 120.00302 * 299.99958 * 4 2 1 7 7 N 1.31519 * 119.99970 * 180.02562 * 6 4 2 8 8 Si 1.86796 * 120.00006 * 0.02562 * 6 4 2 9 9 H 1.48508 * 109.47087 * 89.99792 * 8 6 4 10 10 H 1.48505 * 109.47322 * 209.99618 * 8 6 4 11 11 H 1.48493 * 109.47304 * 329.99993 * 8 6 4 12 12 N 1.46493 * 109.47078 * 239.99486 * 2 1 3 13 13 C 1.46495 * 120.00223 * 299.99611 * 12 2 1 14 14 S 1.65609 * 119.99800 * 119.99943 * 12 2 1 15 15 O 1.42099 * 106.40216 * 156.45802 * 14 12 2 16 16 O 1.42098 * 106.39870 * 23.54219 * 14 12 2 17 17 C 1.76188 * 107.21739 * 269.99786 * 14 12 2 18 18 C 1.38391 * 120.14250 * 114.99968 * 17 14 12 19 19 C 1.38209 * 120.22170 * 179.97438 * 18 17 14 20 20 C 1.38388 * 120.21765 * 359.97438 * 19 18 17 21 21 C 1.38419 * 119.70521 * 359.97438 * 20 19 18 22 22 C 1.38424 * 120.14671 * 295.02099 * 17 14 12 23 23 O 1.36460 * 120.31121 * 0.09562 * 22 17 14 24 24 C 1.42912 * 115.92194 * 248.31390 * 23 22 17 25 25 C 1.52068 * 110.73158 * 275.59406 * 24 23 22 26 26 C 1.52059 * 112.37599 * 64.86222 * 25 24 23 27 27 O 1.36471 * 120.32082 * 180.02562 * 21 20 19 28 28 H 1.09005 * 109.46580 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47406 * 300.00041 * 1 2 3 30 30 H 1.08994 * 109.46937 * 60.00789 * 1 2 3 31 31 H 0.96998 * 120.00087 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.47645 * 270.00135 * 13 12 2 33 33 H 1.08996 * 109.47485 * 30.00754 * 13 12 2 34 34 H 1.09008 * 109.47265 * 150.00196 * 13 12 2 35 35 H 1.08001 * 119.88654 * 0.02562 * 18 17 14 36 36 H 1.08003 * 119.89180 * 179.97438 * 19 18 17 37 37 H 1.07997 * 120.14750 * 179.97438 * 20 19 18 38 38 H 1.09000 * 109.21354 * 35.94467 * 24 23 22 39 39 H 1.09003 * 109.21861 * 155.32552 * 24 23 22 40 40 H 1.08998 * 108.94075 * 304.09113 * 25 24 23 41 41 H 1.08996 * 108.86450 * 185.58295 * 25 24 23 42 42 H 1.09002 * 109.21622 * 174.77469 * 26 25 24 43 43 H 1.09003 * 109.21481 * 55.39855 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1316 6 6 1.6992 -0.2391 2.4828 7 7 2.1380 -0.8588 3.5567 8 14 0.6248 1.2792 2.6540 9 1 -0.8029 0.8728 2.6997 10 1 0.9758 1.9954 3.9067 11 1 0.8470 2.1766 1.4919 12 7 2.0183 -0.6907 -1.1960 13 6 1.6645 -2.0933 -1.4278 14 16 2.9704 0.1141 -2.2862 15 8 3.7119 -0.8790 -2.9813 16 8 3.5794 1.1829 -1.5748 17 6 1.8961 0.8532 -3.4711 18 6 1.8149 2.2311 -3.5712 19 6 0.9731 2.8126 -4.5004 20 6 0.2063 2.0209 -5.3372 21 6 0.2860 0.6424 -5.2403 22 6 1.1294 0.0583 -4.3055 23 8 1.1981 -1.3016 -4.2156 24 6 1.7943 -1.9719 -5.3282 25 6 0.7697 -2.2073 -6.4269 26 6 0.2581 -0.9082 -7.0293 27 8 -0.4642 -0.1504 -6.0596 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.9034 -0.5275 4.4376 32 1 2.4158 -2.7378 -0.9714 33 1 0.6905 -2.3003 -0.9845 34 1 1.6239 -2.2854 -2.5000 35 1 2.4119 2.8540 -2.9216 36 1 0.9135 3.8885 -4.5737 37 1 -0.4514 2.4765 -6.0626 38 1 2.6081 -1.3620 -5.7203 39 1 2.1921 -2.9314 -4.9978 40 1 -0.0732 -2.7601 -6.0121 41 1 1.2285 -2.8051 -7.2144 42 1 -0.3987 -1.1363 -7.8688 43 1 1.1041 -0.3202 -7.3852 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593543252.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:01 Heat of formation + Delta-G solvation = -122.907029 kcal Electronic energy + Delta-G solvation = -29869.895675 eV Core-core repulsion = 25814.971788 eV Total energy + Delta-G solvation = -4054.923888 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.02997 -38.90819 -38.68715 -38.30393 -37.98419 -36.93775 -34.53834 -33.92132 -32.10933 -31.80332 -30.29111 -27.60611 -27.36629 -26.95969 -24.71974 -23.30272 -22.83066 -22.51573 -20.24684 -19.58044 -19.05498 -18.72007 -18.36025 -17.89469 -17.30644 -17.23041 -16.63159 -16.45406 -16.24182 -16.00304 -15.36167 -15.26874 -15.15142 -14.93376 -14.48153 -14.23907 -14.16675 -13.90953 -13.76087 -13.45816 -13.43779 -13.26844 -13.14899 -13.09616 -12.92392 -12.77871 -12.45417 -12.28295 -12.07902 -12.01361 -11.75063 -11.46377 -11.42822 -11.34348 -11.00751 -10.75423 -10.42050 -9.75469 -9.66998 -8.29363 -6.34526 -0.69281 -0.38301 -0.07394 1.30681 1.38772 1.47610 1.88432 2.12680 2.32423 2.32986 2.58605 2.73677 3.04731 3.32076 3.68705 3.70194 3.83381 3.93999 4.00506 4.16226 4.20424 4.25295 4.33848 4.35419 4.43565 4.45002 4.64728 4.67678 4.76497 4.78832 4.80298 4.84937 4.91997 4.99534 5.09596 5.10519 5.11915 5.18728 5.42831 5.49640 5.56999 5.82723 5.94702 6.34146 6.37331 6.69046 7.29707 8.87333 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016493 B = 0.004544 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.243701 B = 6160.555311 C = 6535.707972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.240 3.760 3 H 0.048 0.952 4 C -0.525 4.525 5 H 0.042 0.958 6 C 0.018 3.982 7 N -0.943 5.943 8 Si 0.937 3.063 9 H -0.255 1.255 10 H -0.294 1.294 11 H -0.246 1.246 12 N -0.978 5.978 13 C 0.104 3.896 14 S 2.694 3.306 15 O -0.977 6.977 16 O -0.990 6.990 17 C -0.688 4.688 18 C -0.033 4.033 19 C -0.119 4.119 20 C -0.057 4.057 21 C 0.037 3.963 22 C 0.153 3.847 23 O -0.337 6.337 24 C 0.049 3.951 25 C -0.182 4.182 26 C 0.049 3.951 27 O -0.329 6.329 28 H 0.065 0.935 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.268 0.732 32 H 0.035 0.965 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.152 0.848 36 H 0.182 0.818 37 H 0.177 0.823 38 H 0.060 0.940 39 H 0.120 0.880 40 H 0.081 0.919 41 H 0.124 0.876 42 H 0.134 0.866 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.101 4.327 -26.113 27.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.135 3.865 3 H 0.066 0.934 4 C -0.565 4.565 5 H 0.060 0.940 6 C -0.180 4.180 7 N -0.583 5.583 8 Si 0.762 3.238 9 H -0.180 1.180 10 H -0.222 1.222 11 H -0.170 1.170 12 N -0.816 5.816 13 C -0.041 4.041 14 S 2.787 3.213 15 O -0.967 6.967 16 O -0.980 6.980 17 C -0.777 4.777 18 C -0.052 4.052 19 C -0.138 4.138 20 C -0.075 4.075 21 C -0.008 4.008 22 C 0.107 3.893 23 O -0.254 6.254 24 C -0.024 4.024 25 C -0.219 4.219 26 C -0.025 4.025 27 O -0.246 6.246 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.169 0.831 36 H 0.199 0.801 37 H 0.194 0.806 38 H 0.078 0.922 39 H 0.138 0.862 40 H 0.100 0.900 41 H 0.142 0.858 42 H 0.152 0.848 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.437 4.167 -25.799 26.914 hybrid contribution -0.382 0.246 0.599 0.752 sum -6.820 4.413 -25.200 26.476 Atomic orbital electron populations 1.22369 0.96732 1.02376 1.00116 1.18906 0.92194 0.92751 0.82661 0.93383 1.21390 1.31636 1.13155 0.90279 0.94010 1.25744 0.97262 0.99848 0.95162 1.70024 1.47276 1.42363 0.98605 0.86046 0.79674 0.80157 0.77886 1.18011 1.22196 1.16974 1.56959 1.70334 1.20906 1.33413 1.21479 1.01088 0.79658 1.01905 1.01522 0.74072 0.72766 0.72898 1.93475 1.69068 1.59446 1.74714 1.93506 1.74821 1.57094 1.72596 1.30875 1.20564 1.05223 1.21074 1.21256 0.96129 0.91180 0.96661 1.21639 0.95218 1.02514 0.94400 1.21803 0.96823 0.90552 0.98326 1.19306 0.95747 0.91567 0.94148 1.18662 0.92970 0.83810 0.93853 1.86306 1.80195 1.14202 1.44675 1.22999 0.94814 0.98394 0.86225 1.22487 1.00422 0.99575 0.99448 1.22972 0.98060 0.91288 0.90142 1.86326 1.32928 1.58216 1.47081 0.91572 0.93596 0.92045 0.92318 0.94593 0.90690 0.88789 0.83051 0.80097 0.80583 0.92167 0.86222 0.90033 0.85759 0.84796 0.91724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.54 8.65 71.98 0.62 -5.92 16 2 C 0.24 11.62 2.21 44.25 0.10 11.72 16 3 H 0.05 2.41 5.97 -2.39 -0.01 2.40 16 4 C -0.53 -30.52 8.95 25.60 0.23 -30.29 16 5 H 0.04 2.69 7.89 -2.91 -0.02 2.67 16 6 C 0.02 1.07 5.45 84.65 0.46 1.53 16 7 N -0.94 -59.25 13.96 21.45 0.30 -58.95 16 8 Si 0.94 44.42 24.37 68.60 1.67 46.09 16 9 H -0.25 -11.12 6.87 99.48 0.68 -10.44 16 10 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 11 H -0.25 -10.88 6.53 99.48 0.65 -10.23 16 12 N -0.98 -42.28 3.06 -520.46 -1.59 -43.88 16 13 C 0.10 3.99 9.42 127.77 1.20 5.20 16 14 S 2.69 109.22 5.25 -56.49 -0.30 108.93 16 15 O -0.98 -40.51 16.39 -123.12 -2.02 -42.52 16 16 O -0.99 -45.56 15.55 -128.00 -1.99 -47.55 16 17 C -0.69 -22.03 5.92 22.35 0.13 -21.90 16 18 C -0.03 -0.86 9.55 22.30 0.21 -0.65 16 19 C -0.12 -2.14 10.04 22.30 0.22 -1.92 16 20 C -0.06 -1.01 10.01 22.35 0.22 -0.78 16 21 C 0.04 0.88 5.73 22.45 0.13 1.01 16 22 C 0.15 4.46 5.67 22.45 0.13 4.59 16 23 O -0.34 -9.75 6.12 -76.55 -0.47 -10.22 16 24 C 0.05 1.05 6.51 71.67 0.47 1.52 16 25 C -0.18 -2.57 5.92 29.98 0.18 -2.39 16 26 C 0.05 0.68 6.51 71.67 0.47 1.15 16 27 O -0.33 -7.02 10.15 -84.23 -0.85 -7.88 16 28 H 0.07 2.65 6.66 -2.38 -0.02 2.64 16 29 H 0.05 1.93 3.27 -2.39 -0.01 1.93 16 30 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.07 2.76 6.43 -2.39 -0.02 2.75 16 34 H 0.09 3.15 4.83 -2.38 -0.01 3.14 16 35 H 0.15 3.87 7.34 -2.91 -0.02 3.85 16 36 H 0.18 1.74 8.06 -2.91 -0.02 1.72 16 37 H 0.18 1.82 8.06 -2.91 -0.02 1.80 16 38 H 0.06 1.31 7.93 -2.39 -0.02 1.29 16 39 H 0.12 2.31 8.14 -2.39 -0.02 2.30 16 40 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.06 0.80 7.93 -2.39 -0.02 0.79 16 Total: -1.00 -78.51 347.44 0.48 -78.03 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.96 Total: 15.09 kcal Atomic # 6 Polarization: -41.91 SS G_CDS: 4.77 Total: -37.14 kcal Atomic # 7 Polarization: -101.54 SS G_CDS: -1.29 Total: -102.83 kcal Atomic # 8 Polarization: -102.84 SS G_CDS: -5.33 Total: -108.17 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.67 Total: 46.09 kcal Atomic # 16 Polarization: 109.22 SS G_CDS: -0.30 Total: 108.93 kcal Total: -78.51 0.48 -78.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593543252.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.881 kcal (2) G-P(sol) polarization free energy of solvation -78.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds