Wall clock time and date at job start Sat Apr 11 2020 06:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46756 * 2 1 4 4 C 1.50697 * 109.47312 * 240.00309 * 2 1 3 5 5 C 1.38238 * 119.99910 * 305.10293 * 4 2 1 6 6 C 1.38232 * 120.00143 * 179.81460 * 5 4 2 7 7 C 1.38241 * 119.99998 * 0.38643 * 6 5 4 8 8 C 1.38236 * 119.99847 * 359.86500 * 7 6 5 9 9 C 1.38234 * 119.99943 * 359.94860 * 8 7 6 10 10 C 1.53003 * 109.47325 * 119.99734 * 2 1 3 11 11 H 1.08992 * 109.46608 * 55.80493 * 10 2 1 12 12 N 1.46494 * 109.46800 * 175.80304 * 10 2 1 13 13 S 1.65606 * 120.00017 * 215.00321 * 12 10 2 14 14 O 1.42094 * 104.27815 * 181.07157 * 13 12 10 15 15 O 1.42104 * 104.27492 * 308.93125 * 13 12 10 16 16 C 1.81399 * 104.44859 * 64.99749 * 13 12 10 17 17 C 1.53000 * 109.46782 * 180.02562 * 16 13 12 18 18 C 1.50703 * 109.47062 * 179.97438 * 17 16 13 19 19 H 1.08003 * 119.99780 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00249 * 180.02562 * 18 17 16 21 21 N 1.31509 * 119.99801 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00002 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.47228 * 60.00014 * 22 20 18 24 24 H 1.48501 * 109.47287 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47253 * 300.00355 * 22 20 18 26 26 C 1.50697 * 109.47189 * 295.80140 * 10 2 1 27 27 O 1.20823 * 120.00156 * 267.30648 * 26 10 2 28 28 O 1.34234 * 119.99767 * 87.30565 * 26 10 2 29 29 H 1.09002 * 109.47722 * 60.00438 * 1 2 3 30 30 H 1.09005 * 109.46756 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47177 * 299.99917 * 1 2 3 32 32 H 1.08001 * 119.99827 * 359.97438 * 5 4 2 33 33 H 1.08002 * 120.00286 * 180.23236 * 6 5 4 34 34 H 1.07996 * 120.00036 * 179.83692 * 7 6 5 35 35 H 1.07996 * 119.99955 * 179.97438 * 8 7 6 36 36 H 1.08002 * 120.00148 * 179.97438 * 9 8 7 37 37 H 0.97005 * 120.00264 * 35.27513 * 12 10 2 38 38 H 1.08997 * 109.47306 * 299.99864 * 16 13 12 39 39 H 1.08998 * 109.46937 * 60.00595 * 16 13 12 40 40 H 1.08997 * 109.47691 * 300.00091 * 17 16 13 41 41 H 1.08998 * 109.47022 * 60.00496 * 17 16 13 42 42 H 0.96998 * 120.00128 * 179.97438 * 21 20 18 43 43 H 0.96703 * 116.99980 * 179.97438 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 6 1.6137 -1.9991 -1.5039 6 6 2.0715 -2.6493 -2.6346 7 6 2.9542 -2.0137 -3.4877 8 6 3.3769 -0.7268 -3.2116 9 6 2.9161 -0.0753 -2.0829 10 6 2.0400 -0.7212 1.2493 11 1 1.6166 -1.7248 1.2876 12 7 3.5015 -0.8093 1.1997 13 16 4.2719 -2.1420 1.8103 14 8 5.6526 -1.8685 1.6156 15 8 3.7315 -2.2915 3.1160 16 6 3.7357 -3.5048 0.7398 17 6 4.3874 -4.8076 1.2078 18 6 3.9415 -5.9399 0.3189 19 1 3.2617 -5.7492 -0.4984 20 6 4.4014 -7.2192 0.5489 21 7 5.2287 -7.4514 1.5445 22 14 3.8493 -8.6225 -0.5534 23 1 4.2560 -8.3415 -1.9538 24 1 4.4816 -9.8871 -0.0991 25 1 2.3718 -8.7545 -0.4842 26 6 1.6245 0.0467 2.4775 27 8 2.3672 0.8720 2.9541 28 8 0.4291 -0.1861 3.0420 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.9269 -2.4970 -0.8354 33 1 1.7415 -3.6548 -2.8502 34 1 3.3139 -2.5226 -4.3697 35 1 4.0668 -0.2304 -3.8778 36 1 3.2466 0.9300 -1.8669 37 1 4.0182 -0.0852 0.8128 38 1 2.6514 -3.6024 0.7914 39 1 4.0335 -3.2980 -0.2882 40 1 5.4718 -4.7104 1.1566 41 1 4.0892 -5.0141 2.2357 42 1 5.5520 -8.3514 1.7066 43 1 0.2069 0.3308 3.8286 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594680677.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:08 Heat of formation + Delta-G solvation = -151.638647 kcal Electronic energy + Delta-G solvation = -28902.188400 eV Core-core repulsion = 24846.018616 eV Total energy + Delta-G solvation = -4056.169784 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.73609 -39.42401 -36.80836 -36.51363 -36.01374 -35.50247 -33.92422 -33.13312 -31.23795 -30.92201 -29.80249 -27.04212 -25.63932 -24.24247 -22.70135 -21.78744 -21.69168 -20.35593 -19.05315 -18.33687 -17.67345 -17.27170 -16.75468 -16.45893 -16.27844 -15.70334 -15.38226 -15.14597 -14.94302 -14.59904 -14.54176 -13.88373 -13.73993 -13.47270 -13.37743 -13.03407 -12.85066 -12.53333 -12.43083 -12.25570 -11.79286 -11.70201 -11.65992 -11.61008 -11.56306 -11.40325 -11.10305 -11.07508 -10.99363 -10.90825 -10.84703 -10.46822 -10.40082 -9.89954 -9.64127 -9.13411 -8.92591 -8.78779 -8.51402 -6.13403 -4.18948 0.66085 1.26023 1.38139 2.09288 2.73566 3.07837 3.25223 3.30623 3.31760 3.72624 4.13834 4.31549 4.35817 4.41805 4.56027 4.71719 4.77259 4.94373 4.97572 5.05237 5.12659 5.13252 5.21890 5.36777 5.44049 5.52815 5.58023 5.61449 5.70582 5.79514 5.91394 5.97748 6.00099 6.39221 6.43844 6.44220 6.50194 6.53551 6.91188 6.95583 7.27925 7.33678 7.78996 7.79762 8.15519 8.83887 9.45539 10.97724 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010129 B = 0.004723 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.564005 B = 5927.542220 C = 7301.582849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.048 4.048 3 H 0.093 0.907 4 C -0.078 4.078 5 C -0.113 4.113 6 C -0.107 4.107 7 C -0.118 4.118 8 C -0.118 4.118 9 C -0.114 4.114 10 C 0.176 3.824 11 H 0.120 0.880 12 N -1.102 6.102 13 S 2.581 3.419 14 O -0.958 6.958 15 O -0.963 6.963 16 C -0.582 4.582 17 C 0.030 3.970 18 C -0.517 4.517 19 H 0.062 0.938 20 C 0.059 3.941 21 N -0.890 5.890 22 Si 0.899 3.101 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.275 1.275 26 C 0.471 3.529 27 O -0.501 6.501 28 O -0.512 6.512 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.420 0.580 38 H 0.118 0.882 39 H 0.125 0.875 40 H 0.033 0.967 41 H 0.033 0.967 42 H 0.266 0.734 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.386 16.149 -7.417 21.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.068 4.068 3 H 0.111 0.889 4 C -0.078 4.078 5 C -0.131 4.131 6 C -0.125 4.125 7 C -0.136 4.136 8 C -0.136 4.136 9 C -0.132 4.132 10 C 0.065 3.935 11 H 0.137 0.863 12 N -0.857 5.857 13 S 2.679 3.321 14 O -0.948 6.948 15 O -0.953 6.953 16 C -0.716 4.716 17 C -0.009 4.009 18 C -0.556 4.556 19 H 0.080 0.920 20 C -0.144 4.144 21 N -0.528 5.528 22 Si 0.726 3.274 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C 0.310 3.690 27 O -0.387 6.387 28 O -0.323 6.323 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.255 0.745 38 H 0.136 0.864 39 H 0.144 0.856 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.075 0.925 43 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -10.474 15.914 -6.667 20.184 hybrid contribution -0.401 -0.395 -0.636 0.850 sum -10.875 15.519 -7.303 20.309 Atomic orbital electron populations 1.21932 0.92380 1.03607 1.02844 1.20350 0.97198 0.99496 0.89768 0.88892 1.19479 0.98075 0.94792 0.95470 1.21054 1.00296 0.94097 0.97634 1.21213 0.97028 0.99905 0.94378 1.21210 0.97569 0.95044 0.99817 1.21121 0.99859 0.95236 0.97391 1.21000 0.97344 0.99974 0.94916 1.20233 0.82192 1.01020 0.90057 0.86259 1.55805 1.12253 1.38044 1.79637 1.06029 0.74336 0.75442 0.76244 1.93566 1.30993 1.83427 1.86838 1.93563 1.79853 1.85788 1.36113 1.30442 1.11139 1.15500 1.14529 1.18960 0.96200 0.87804 0.97949 1.20915 1.28752 0.91661 1.14311 0.91993 1.25055 0.94931 0.98981 0.95448 1.69941 1.31861 1.21779 1.29254 0.86553 0.78892 0.81220 0.80726 1.20096 1.21121 1.20085 1.23932 0.78738 0.81178 0.85201 1.90699 1.52477 1.33013 1.62503 1.84543 1.36688 1.65266 1.45841 0.91341 0.91194 0.91479 0.85740 0.85619 0.86112 0.86152 0.86166 0.74549 0.86377 0.85643 0.94868 0.94862 0.92472 0.73189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.67 37.16 0.32 -0.77 16 2 C -0.05 -0.43 2.24 -91.77 -0.21 -0.63 16 3 H 0.09 0.76 7.89 -51.93 -0.41 0.35 16 4 C -0.08 -0.76 4.26 -104.62 -0.45 -1.21 16 5 C -0.11 -1.19 8.81 -39.58 -0.35 -1.54 16 6 C -0.11 -1.20 10.05 -39.58 -0.40 -1.60 16 7 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 8 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 9 C -0.11 -1.09 9.67 -39.58 -0.38 -1.48 16 10 C 0.18 2.07 1.98 -69.09 -0.14 1.93 16 11 H 0.12 1.29 6.86 -51.93 -0.36 0.94 16 12 N -1.10 -15.17 4.45 -5.89 -0.03 -15.20 16 13 S 2.58 47.69 5.38 -107.50 -0.58 47.12 16 14 O -0.96 -20.56 18.08 -57.54 -1.04 -21.60 16 15 O -0.96 -20.65 17.78 -57.54 -1.02 -21.67 16 16 C -0.58 -10.82 5.90 37.16 0.22 -10.60 16 17 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 18 C -0.52 -13.75 9.11 -34.44 -0.31 -14.07 16 19 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 22 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 C 0.47 6.06 6.80 36.00 0.24 6.31 16 27 O -0.50 -7.95 17.40 -18.75 -0.33 -8.27 16 28 O -0.51 -5.02 12.35 -39.27 -0.48 -5.51 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.49 7.12 -51.93 -0.37 0.12 16 31 H 0.07 0.47 6.60 -51.93 -0.34 0.13 16 32 H 0.12 1.16 7.15 -52.49 -0.38 0.78 16 33 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 36 H 0.12 0.93 7.95 -52.49 -0.42 0.51 16 37 H 0.42 5.06 8.80 -34.47 -0.30 4.75 16 38 H 0.12 1.89 7.44 -51.93 -0.39 1.50 16 39 H 0.13 2.14 8.14 -51.92 -0.42 1.72 16 40 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.41 2.37 9.10 45.56 0.41 2.78 16 LS Contribution 379.31 15.07 5.72 5.72 Total: -1.00 -37.25 379.31 -9.57 -46.82 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.05 Total: 7.06 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: -2.48 Total: -24.75 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.71 Total: -40.58 kcal Atomic # 8 Polarization: -54.18 SS G_CDS: -2.87 Total: -57.06 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 47.69 SS G_CDS: -0.58 Total: 47.12 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.25 -9.57 -46.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594680677.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.822 kcal (2) G-P(sol) polarization free energy of solvation -37.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds