Wall clock time and date at job start Sat Apr 11 2020 06:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46756 * 2 1 4 4 C 1.50697 * 109.47312 * 240.00309 * 2 1 3 5 5 C 1.38238 * 119.99910 * 305.10293 * 4 2 1 6 6 C 1.38232 * 120.00143 * 179.81460 * 5 4 2 7 7 C 1.38241 * 119.99998 * 0.38643 * 6 5 4 8 8 C 1.38236 * 119.99847 * 359.86500 * 7 6 5 9 9 C 1.38234 * 119.99943 * 359.94860 * 8 7 6 10 10 C 1.53003 * 109.47325 * 119.99734 * 2 1 3 11 11 H 1.08992 * 109.46608 * 55.80493 * 10 2 1 12 12 N 1.46494 * 109.46800 * 175.80304 * 10 2 1 13 13 S 1.65606 * 120.00017 * 215.00321 * 12 10 2 14 14 O 1.42094 * 104.27815 * 181.07157 * 13 12 10 15 15 O 1.42104 * 104.27492 * 308.93125 * 13 12 10 16 16 C 1.81399 * 104.44859 * 64.99749 * 13 12 10 17 17 C 1.53000 * 109.46782 * 180.02562 * 16 13 12 18 18 C 1.50703 * 109.47062 * 179.97438 * 17 16 13 19 19 H 1.08003 * 119.99780 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00249 * 180.02562 * 18 17 16 21 21 N 1.31509 * 119.99801 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00002 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.47228 * 60.00014 * 22 20 18 24 24 H 1.48501 * 109.47287 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47253 * 300.00355 * 22 20 18 26 26 C 1.50697 * 109.47189 * 295.80140 * 10 2 1 27 27 O 1.20823 * 120.00156 * 267.30648 * 26 10 2 28 28 O 1.34234 * 119.99767 * 87.30565 * 26 10 2 29 29 H 1.09002 * 109.47722 * 60.00438 * 1 2 3 30 30 H 1.09005 * 109.46756 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47177 * 299.99917 * 1 2 3 32 32 H 1.08001 * 119.99827 * 359.97438 * 5 4 2 33 33 H 1.08002 * 120.00286 * 180.23236 * 6 5 4 34 34 H 1.07996 * 120.00036 * 179.83692 * 7 6 5 35 35 H 1.07996 * 119.99955 * 179.97438 * 8 7 6 36 36 H 1.08002 * 120.00148 * 179.97438 * 9 8 7 37 37 H 0.97005 * 120.00264 * 35.27513 * 12 10 2 38 38 H 1.08997 * 109.47306 * 299.99864 * 16 13 12 39 39 H 1.08998 * 109.46937 * 60.00595 * 16 13 12 40 40 H 1.08997 * 109.47691 * 300.00091 * 17 16 13 41 41 H 1.08998 * 109.47022 * 60.00496 * 17 16 13 42 42 H 0.96998 * 120.00128 * 179.97438 * 21 20 18 43 43 H 0.96703 * 116.99980 * 179.97438 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 6 1.6137 -1.9991 -1.5039 6 6 2.0715 -2.6493 -2.6346 7 6 2.9542 -2.0137 -3.4877 8 6 3.3769 -0.7268 -3.2116 9 6 2.9161 -0.0753 -2.0829 10 6 2.0400 -0.7212 1.2493 11 1 1.6166 -1.7248 1.2876 12 7 3.5015 -0.8093 1.1997 13 16 4.2719 -2.1420 1.8103 14 8 5.6526 -1.8685 1.6156 15 8 3.7315 -2.2915 3.1160 16 6 3.7357 -3.5048 0.7398 17 6 4.3874 -4.8076 1.2078 18 6 3.9415 -5.9399 0.3189 19 1 3.2617 -5.7492 -0.4984 20 6 4.4014 -7.2192 0.5489 21 7 5.2287 -7.4514 1.5445 22 14 3.8493 -8.6225 -0.5534 23 1 4.2560 -8.3415 -1.9538 24 1 4.4816 -9.8871 -0.0991 25 1 2.3718 -8.7545 -0.4842 26 6 1.6245 0.0467 2.4775 27 8 2.3672 0.8720 2.9541 28 8 0.4291 -0.1861 3.0420 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.9269 -2.4970 -0.8354 33 1 1.7415 -3.6548 -2.8502 34 1 3.3139 -2.5226 -4.3697 35 1 4.0668 -0.2304 -3.8778 36 1 3.2466 0.9300 -1.8669 37 1 4.0182 -0.0852 0.8128 38 1 2.6514 -3.6024 0.7914 39 1 4.0335 -3.2980 -0.2882 40 1 5.4718 -4.7104 1.1566 41 1 4.0892 -5.0141 2.2357 42 1 5.5520 -8.3514 1.7066 43 1 0.2069 0.3308 3.8286 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594680677.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:07 Heat of formation + Delta-G solvation = -179.028061 kcal Electronic energy + Delta-G solvation = -28903.376094 eV Core-core repulsion = 24846.018616 eV Total energy + Delta-G solvation = -4057.357478 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.66606 -40.21200 -38.29180 -37.53942 -37.11819 -36.96294 -35.88183 -34.07798 -33.13641 -31.69040 -30.55757 -27.93227 -27.58865 -24.98517 -23.66869 -23.39653 -22.63872 -21.17280 -20.43763 -19.42082 -19.01976 -18.58602 -18.00737 -17.58467 -17.41168 -16.95980 -16.73010 -16.49615 -16.23743 -15.91058 -15.44264 -15.13515 -14.67003 -14.56476 -14.42580 -14.10393 -13.95355 -13.76837 -13.53784 -13.42567 -13.30331 -13.23600 -12.94452 -12.86962 -12.78459 -12.72453 -12.42473 -12.31476 -12.22501 -12.14269 -12.02673 -11.76484 -11.64409 -11.58250 -11.21029 -10.67595 -10.59950 -9.68556 -9.54380 -8.21826 -6.34908 -0.84411 0.49776 0.62808 1.10646 1.43947 1.46919 1.54633 1.59154 2.05157 2.40888 2.69361 2.96370 3.12262 3.14187 3.50280 3.63921 3.77847 3.90847 4.03609 4.11476 4.18233 4.25403 4.31818 4.41352 4.47280 4.61419 4.72346 4.75384 4.83015 5.00288 5.09210 5.22599 5.27227 5.28577 5.29856 5.40451 5.57552 5.69613 5.72272 5.76322 5.77938 5.87369 6.09157 6.22231 6.78404 6.94985 7.34985 8.90532 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010129 B = 0.004723 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.564005 B = 5927.542220 C = 7301.582849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.038 4.038 3 H 0.104 0.896 4 C -0.080 4.080 5 C -0.123 4.123 6 C -0.126 4.126 7 C -0.132 4.132 8 C -0.127 4.127 9 C -0.119 4.119 10 C 0.164 3.836 11 H 0.131 0.869 12 N -1.087 6.087 13 S 2.602 3.398 14 O -0.993 6.993 15 O -0.996 6.996 16 C -0.571 4.571 17 C 0.023 3.977 18 C -0.528 4.528 19 H 0.082 0.918 20 C -0.003 4.003 21 N -0.937 5.937 22 Si 0.970 3.030 23 H -0.263 1.263 24 H -0.289 1.289 25 H -0.261 1.261 26 C 0.472 3.528 27 O -0.537 6.537 28 O -0.502 6.502 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.135 0.865 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.430 0.570 38 H 0.148 0.852 39 H 0.144 0.856 40 H 0.003 0.997 41 H 0.007 0.993 42 H 0.266 0.734 43 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.429 16.913 -9.098 23.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.058 4.058 3 H 0.122 0.878 4 C -0.080 4.080 5 C -0.141 4.141 6 C -0.144 4.144 7 C -0.150 4.150 8 C -0.144 4.144 9 C -0.137 4.137 10 C 0.054 3.946 11 H 0.148 0.852 12 N -0.847 5.847 13 S 2.700 3.300 14 O -0.983 6.983 15 O -0.985 6.985 16 C -0.705 4.705 17 C -0.016 4.016 18 C -0.567 4.567 19 H 0.100 0.900 20 C -0.201 4.201 21 N -0.577 5.577 22 Si 0.794 3.206 23 H -0.188 1.188 24 H -0.215 1.215 25 H -0.185 1.185 26 C 0.313 3.687 27 O -0.426 6.426 28 O -0.315 6.315 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.153 0.847 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.154 0.846 36 H 0.157 0.843 37 H 0.267 0.733 38 H 0.166 0.834 39 H 0.162 0.838 40 H 0.021 0.979 41 H 0.025 0.975 42 H 0.074 0.926 43 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -12.547 16.692 -8.350 22.490 hybrid contribution 0.175 -0.550 -0.092 0.584 sum -12.373 16.143 -8.442 22.021 Atomic orbital electron populations 1.21951 0.90863 1.04194 1.03610 1.20337 0.98263 0.99455 0.87707 0.87790 1.19572 0.98066 0.94660 0.95742 1.21249 1.00598 0.94539 0.97723 1.21373 0.97730 1.00277 0.95053 1.21431 0.97746 0.95618 1.00229 1.21388 1.00061 0.95126 0.97868 1.21291 0.96908 1.00844 0.94657 1.20639 0.80556 1.02140 0.91245 0.85155 1.55263 1.13546 1.36673 1.79233 1.05102 0.73461 0.75872 0.75564 1.93512 1.33476 1.84153 1.87160 1.93520 1.80217 1.86593 1.38203 1.30252 1.12516 1.12471 1.15225 1.18812 0.94934 0.91014 0.96798 1.21428 1.28484 0.92170 1.14635 0.90022 1.26077 0.94950 1.02215 0.96881 1.70102 1.33656 1.22388 1.31511 0.85419 0.79029 0.77231 0.78922 1.18775 1.21495 1.18514 1.24066 0.78992 0.80494 0.85181 1.90694 1.53643 1.34663 1.63601 1.84498 1.35123 1.65256 1.46650 0.90178 0.90755 0.91109 0.84695 0.85619 0.85373 0.84596 0.84337 0.73279 0.83373 0.83783 0.97861 0.97457 0.92565 0.71034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.67 71.98 0.62 -1.07 16 2 C -0.04 -0.56 2.24 -11.54 -0.03 -0.59 16 3 H 0.10 1.36 7.89 -2.38 -0.02 1.34 16 4 C -0.08 -1.36 4.26 -19.87 -0.08 -1.45 16 5 C -0.12 -2.30 8.81 22.27 0.20 -2.10 16 6 C -0.13 -2.60 10.05 22.27 0.22 -2.38 16 7 C -0.13 -2.60 10.05 22.27 0.22 -2.37 16 8 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 9 C -0.12 -1.98 9.67 22.27 0.22 -1.76 16 10 C 0.16 3.49 1.98 44.25 0.09 3.58 16 11 H 0.13 2.48 6.86 -2.39 -0.02 2.47 16 12 N -1.09 -28.34 4.45 -172.54 -0.77 -29.11 16 13 S 2.60 95.63 5.38 -56.49 -0.30 95.33 16 14 O -0.99 -43.16 18.08 -127.65 -2.31 -45.46 16 15 O -1.00 -42.90 17.78 -127.65 -2.27 -45.17 16 16 C -0.57 -20.75 5.90 71.98 0.42 -20.32 16 17 C 0.02 1.19 4.98 29.85 0.15 1.34 16 18 C -0.53 -27.93 9.11 25.60 0.23 -27.70 16 19 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 20 C 0.00 -0.17 5.46 84.66 0.46 0.30 16 21 N -0.94 -56.25 13.29 21.45 0.28 -55.96 16 22 Si 0.97 42.00 29.54 68.60 2.03 44.02 16 23 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 24 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 25 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 26 C 0.47 11.26 6.80 71.23 0.48 11.75 16 27 O -0.54 -16.39 17.40 21.97 0.38 -16.01 16 28 O -0.50 -8.65 12.35 -51.46 -0.64 -9.28 16 29 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.80 7.12 -2.38 -0.02 0.78 16 31 H 0.07 0.77 6.60 -2.39 -0.02 0.76 16 32 H 0.14 2.13 7.15 -2.91 -0.02 2.11 16 33 H 0.13 2.48 8.06 -2.91 -0.02 2.45 16 34 H 0.13 2.20 8.06 -2.91 -0.02 2.17 16 35 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 36 H 0.14 1.72 7.95 -2.91 -0.02 1.70 16 37 H 0.43 9.67 8.80 -96.74 -0.85 8.81 16 38 H 0.15 4.43 7.44 -2.39 -0.02 4.41 16 39 H 0.14 4.71 8.14 -2.39 -0.02 4.69 16 40 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 41 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 43 H 0.43 3.96 9.10 -74.06 -0.67 3.29 16 Total: -1.00 -81.39 379.31 -0.63 -82.02 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: -0.48 Total: 24.42 kcal Atomic # 6 Polarization: -48.23 SS G_CDS: 3.44 Total: -44.80 kcal Atomic # 7 Polarization: -84.59 SS G_CDS: -0.48 Total: -85.07 kcal Atomic # 8 Polarization: -111.10 SS G_CDS: -4.83 Total: -115.92 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 16 Polarization: 95.63 SS G_CDS: -0.30 Total: 95.33 kcal Total: -81.39 -0.63 -82.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594680677.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.012 kcal (2) G-P(sol) polarization free energy of solvation -81.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds