Wall clock time and date at job start Sat Apr 11 2020 06:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47041 * 2 1 4 4 C 1.50703 * 109.46852 * 120.00078 * 2 1 3 5 5 C 1.38232 * 120.00219 * 59.72737 * 4 2 1 6 6 C 1.38236 * 120.00051 * 179.78763 * 5 4 2 7 7 C 1.38233 * 119.99662 * 0.43929 * 6 5 4 8 8 C 1.38231 * 120.00196 * 359.81657 * 7 6 5 9 9 C 1.38233 * 120.00046 * 359.97269 * 8 7 6 10 10 C 1.53002 * 109.47071 * 240.00115 * 2 1 3 11 11 H 1.08990 * 109.46945 * 299.99721 * 10 2 1 12 12 N 1.46499 * 109.47288 * 60.00389 * 10 2 1 13 13 S 1.65593 * 119.99833 * 214.99928 * 12 10 2 14 14 O 1.42104 * 104.27905 * 308.92754 * 13 12 10 15 15 O 1.42102 * 104.27718 * 181.06534 * 13 12 10 16 16 C 1.81399 * 104.45079 * 64.99683 * 13 12 10 17 17 C 1.53005 * 109.47445 * 179.97438 * 16 13 12 18 18 C 1.50696 * 109.47353 * 179.97438 * 17 16 13 19 19 H 1.08000 * 120.00290 * 0.02562 * 18 17 16 20 20 C 1.37870 * 119.99993 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00415 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00139 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47176 * 89.99933 * 22 20 18 24 24 H 1.48504 * 109.47386 * 210.00135 * 22 20 18 25 25 H 1.48504 * 109.46946 * 329.99954 * 22 20 18 26 26 C 1.50707 * 109.46759 * 180.02562 * 10 2 1 27 27 O 1.20819 * 119.99672 * 240.00153 * 26 10 2 28 28 O 1.34224 * 119.99911 * 60.00033 * 26 10 2 29 29 H 1.09000 * 109.47319 * 300.00204 * 1 2 3 30 30 H 1.09008 * 109.46994 * 59.99830 * 1 2 3 31 31 H 1.09002 * 109.47400 * 179.97438 * 1 2 3 32 32 H 1.08004 * 119.99792 * 359.97438 * 5 4 2 33 33 H 1.07997 * 119.99891 * 180.27805 * 6 5 4 34 34 H 1.08004 * 119.99575 * 179.83489 * 7 6 5 35 35 H 1.08005 * 119.99769 * 179.97438 * 8 7 6 36 36 H 1.08006 * 119.99535 * 179.97438 * 9 8 7 37 37 H 0.97001 * 119.99882 * 34.99400 * 12 10 2 38 38 H 1.09001 * 109.47190 * 299.99797 * 16 13 12 39 39 H 1.09004 * 109.47089 * 59.99930 * 16 13 12 40 40 H 1.09001 * 109.46962 * 300.00183 * 17 16 13 41 41 H 1.09004 * 109.46832 * 60.00020 * 17 16 13 42 42 H 0.96999 * 120.00929 * 180.02562 * 21 20 18 43 43 H 0.96701 * 116.99821 * 179.97438 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6937 -2.0322 1.4521 6 6 2.1580 -2.6852 2.5786 7 6 2.9535 -2.0136 3.4880 8 6 3.2877 -0.6903 3.2691 9 6 2.8270 -0.0386 2.1404 10 6 2.0400 -0.7212 -1.2493 11 1 1.6767 -1.7488 -1.2492 12 7 1.5518 -0.0306 -2.4454 13 16 1.1580 -0.8983 -3.7997 14 8 2.2950 -1.7178 -4.0338 15 8 0.7578 0.0864 -4.7428 16 6 -0.2612 -1.9084 -3.2934 17 6 -0.7241 -2.7656 -4.4732 18 6 -1.9026 -3.6052 -4.0524 19 1 -2.2837 -3.5342 -3.0443 20 6 -2.4943 -4.4639 -4.9542 21 7 -3.5232 -5.1962 -4.5871 22 14 -1.8348 -4.5872 -6.6975 23 1 -0.7901 -5.6408 -6.7582 24 1 -2.9431 -4.9352 -7.6227 25 1 -1.2469 -3.2835 -7.0977 26 6 3.5471 -0.7217 -1.2489 27 8 4.1515 -0.1986 -2.1548 28 8 4.2177 -1.3034 -0.2421 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.0688 -2.5557 0.7436 33 1 1.8972 -3.7191 2.7494 34 1 3.3141 -2.5230 4.3695 35 1 3.9089 -0.1655 3.9799 36 1 3.0879 0.9954 1.9696 37 1 1.4591 0.9350 -2.4441 38 1 0.0302 -2.5555 -2.4660 39 1 -1.0758 -1.2573 -2.9761 40 1 -1.0155 -2.1182 -5.3003 41 1 0.0904 -3.4166 -4.7909 42 1 -3.9393 -5.8007 -5.2214 43 1 5.1834 -1.2787 -0.2859 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594680679.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:10 Heat of formation + Delta-G solvation = -170.120163 kcal Electronic energy + Delta-G solvation = -28453.178004 eV Core-core repulsion = 24396.206801 eV Total energy + Delta-G solvation = -4056.971203 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.64958 -40.04604 -38.27272 -37.68455 -37.09158 -36.94001 -35.88988 -33.95817 -33.46825 -31.65001 -30.04029 -28.67845 -27.89607 -24.42439 -23.35837 -23.23525 -22.86573 -21.23116 -20.48486 -19.45586 -19.13144 -18.62788 -18.08486 -17.51731 -17.35592 -16.95569 -16.59689 -16.37258 -16.28785 -15.92973 -15.47118 -15.22330 -14.81776 -14.65415 -14.48437 -14.06171 -13.84666 -13.78728 -13.72636 -13.30462 -13.21957 -13.18780 -13.07416 -12.98055 -12.88376 -12.70259 -12.45806 -12.27969 -12.17422 -12.07601 -11.91182 -11.68261 -11.63642 -11.53719 -11.30004 -10.82009 -10.71571 -9.64298 -9.47344 -8.34050 -6.38792 -0.85500 0.56696 0.67618 1.18487 1.32498 1.35735 1.44314 1.55137 2.10146 2.30884 2.69226 3.00336 3.00545 3.17262 3.40379 3.63551 3.76504 3.88444 4.06802 4.11559 4.12833 4.28149 4.37439 4.42338 4.52600 4.57562 4.60960 4.75428 4.83808 5.02006 5.07352 5.09871 5.10689 5.25853 5.30872 5.43397 5.48915 5.61943 5.72370 5.79063 5.81315 5.89546 6.19263 6.27061 6.67683 7.00048 7.25556 8.80948 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013862 B = 0.003593 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.403359 B = 7791.478765 C = 8862.341443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.040 4.040 3 H 0.106 0.894 4 C -0.075 4.075 5 C -0.120 4.120 6 C -0.128 4.128 7 C -0.127 4.127 8 C -0.124 4.124 9 C -0.110 4.110 10 C 0.165 3.835 11 H 0.132 0.868 12 N -1.086 6.086 13 S 2.606 3.394 14 O -0.989 6.989 15 O -0.986 6.986 16 C -0.581 4.581 17 C -0.019 4.019 18 C -0.520 4.520 19 H 0.058 0.942 20 C 0.017 3.983 21 N -0.937 5.937 22 Si 0.917 3.083 23 H -0.263 1.263 24 H -0.276 1.276 25 H -0.251 1.251 26 C 0.467 3.533 27 O -0.537 6.537 28 O -0.494 6.494 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.130 0.870 37 H 0.433 0.567 38 H 0.148 0.852 39 H 0.155 0.845 40 H 0.032 0.968 41 H 0.029 0.971 42 H 0.269 0.731 43 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.528 11.478 18.415 25.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.060 4.060 3 H 0.124 0.876 4 C -0.076 4.076 5 C -0.138 4.138 6 C -0.146 4.146 7 C -0.145 4.145 8 C -0.142 4.142 9 C -0.128 4.128 10 C 0.055 3.945 11 H 0.149 0.851 12 N -0.846 5.846 13 S 2.703 3.297 14 O -0.979 6.979 15 O -0.976 6.976 16 C -0.714 4.714 17 C -0.058 4.058 18 C -0.560 4.560 19 H 0.076 0.924 20 C -0.182 4.182 21 N -0.577 5.577 22 Si 0.741 3.259 23 H -0.188 1.188 24 H -0.201 1.201 25 H -0.175 1.175 26 C 0.308 3.692 27 O -0.426 6.426 28 O -0.306 6.306 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.148 0.852 37 H 0.270 0.730 38 H 0.166 0.834 39 H 0.173 0.827 40 H 0.050 0.950 41 H 0.047 0.953 42 H 0.078 0.922 43 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 13.656 11.376 17.272 24.783 hybrid contribution 0.248 -0.318 -0.600 0.723 sum 13.904 11.058 16.672 24.363 Atomic orbital electron populations 1.21997 0.91504 1.03784 1.03896 1.20349 0.98133 0.99668 0.87849 0.87554 1.19515 0.98257 0.94299 0.95518 1.21149 1.00051 0.94518 0.98128 1.21315 0.98121 1.00443 0.94688 1.21376 0.98293 0.95180 0.99690 1.21318 1.00116 0.94998 0.97753 1.21129 0.97128 1.00190 0.94384 1.20624 0.86385 1.00143 0.87372 0.85094 1.55236 1.80405 1.20448 1.28525 1.05017 0.76483 0.74725 0.73438 1.93548 1.48966 1.71260 1.84091 1.93533 1.84928 1.59167 1.60014 1.30278 1.18029 1.13463 1.09615 1.19392 0.97367 0.95522 0.93507 1.21132 1.13389 1.22176 0.99256 0.92384 1.25775 0.94899 0.94941 1.02581 1.69987 1.23644 1.26857 1.37241 0.86143 0.79043 0.80211 0.80552 1.18793 1.20090 1.17491 1.24096 0.92607 0.73974 0.78567 1.90724 1.70815 1.43888 1.37193 1.84616 1.27614 1.72059 1.46267 0.90334 0.90646 0.91572 0.85930 0.85453 0.84913 0.84611 0.85235 0.72954 0.83418 0.82711 0.95020 0.95254 0.92202 0.71875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.84 71.98 0.64 -1.41 16 2 C -0.04 -0.57 2.26 -11.54 -0.03 -0.60 16 3 H 0.11 1.22 7.88 -2.39 -0.02 1.20 16 4 C -0.08 -1.15 2.87 -19.87 -0.06 -1.21 16 5 C -0.12 -2.03 8.62 22.27 0.19 -1.84 16 6 C -0.13 -2.04 10.05 22.27 0.22 -1.81 16 7 C -0.13 -1.77 10.05 22.27 0.22 -1.54 16 8 C -0.12 -1.60 10.05 22.27 0.22 -1.37 16 9 C -0.11 -1.50 9.29 22.27 0.21 -1.30 16 10 C 0.16 3.33 2.01 44.25 0.09 3.41 16 11 H 0.13 2.44 6.41 -2.39 -0.02 2.43 16 12 N -1.09 -24.71 4.08 -172.52 -0.70 -25.42 16 13 S 2.61 84.64 5.38 -56.49 -0.30 84.34 16 14 O -0.99 -39.14 17.78 -127.65 -2.27 -41.41 16 15 O -0.99 -37.59 18.08 -127.65 -2.31 -39.90 16 16 C -0.58 -18.84 5.90 71.98 0.42 -18.41 16 17 C -0.02 -0.83 4.05 29.85 0.12 -0.71 16 18 C -0.52 -27.97 9.66 25.60 0.25 -27.72 16 19 H 0.06 3.27 7.99 -2.91 -0.02 3.25 16 20 C 0.02 0.95 5.47 84.65 0.46 1.41 16 21 N -0.94 -56.11 13.96 21.44 0.30 -55.81 16 22 Si 0.92 43.10 27.47 68.60 1.88 44.99 16 23 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.25 -11.27 6.54 99.48 0.65 -10.62 16 26 C 0.47 11.06 7.61 71.24 0.54 11.61 16 27 O -0.54 -17.01 17.19 21.99 0.38 -16.63 16 28 O -0.49 -8.62 11.15 -51.35 -0.57 -9.19 16 29 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.92 7.60 -2.38 -0.02 0.90 16 31 H 0.07 0.93 7.37 -2.39 -0.02 0.91 16 32 H 0.12 1.98 7.10 -2.91 -0.02 1.96 16 33 H 0.13 1.76 8.06 -2.91 -0.02 1.73 16 34 H 0.13 1.34 8.06 -2.91 -0.02 1.32 16 35 H 0.14 1.19 8.06 -2.91 -0.02 1.16 16 36 H 0.13 1.36 7.95 -2.91 -0.02 1.34 16 37 H 0.43 7.76 8.80 -96.75 -0.85 6.91 16 38 H 0.15 4.04 7.44 -2.39 -0.02 4.02 16 39 H 0.15 4.27 8.14 -2.39 -0.02 4.25 16 40 H 0.03 1.42 7.20 -2.39 -0.02 1.41 16 41 H 0.03 1.30 7.57 -2.38 -0.02 1.28 16 42 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 43 H 0.42 4.41 9.10 -74.06 -0.67 3.74 16 Total: -1.00 -80.68 373.75 -0.62 -81.30 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -0.53 Total: 19.25 kcal Atomic # 6 Polarization: -45.02 SS G_CDS: 3.51 Total: -41.51 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -0.41 Total: -81.23 kcal Atomic # 8 Polarization: -102.36 SS G_CDS: -4.77 Total: -107.14 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.88 Total: 44.99 kcal Atomic # 16 Polarization: 84.64 SS G_CDS: -0.30 Total: 84.34 kcal Total: -80.68 -0.62 -81.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594680679.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.822 kcal (2) G-P(sol) polarization free energy of solvation -80.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds