Wall clock time and date at job start Sat Apr 11 2020 06:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45199 * 109.47373 * 2 1 4 4 C 1.34227 * 116.99877 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00123 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99565 * 180.02562 * 4 3 2 7 7 N 1.46504 * 109.47141 * 180.02562 * 6 4 3 8 8 C 1.46506 * 119.99607 * 273.57760 * 7 6 4 9 9 C 1.52996 * 109.46992 * 84.99720 * 8 7 6 10 10 S 1.65592 * 120.00179 * 93.57464 * 7 6 4 11 11 O 1.42101 * 106.40232 * 211.29641 * 10 7 6 12 12 O 1.42099 * 106.40249 * 344.21894 * 10 7 6 13 13 C 1.76203 * 107.21651 * 97.75960 * 10 7 6 14 14 C 1.37637 * 120.12699 * 113.56852 * 13 10 7 15 15 C 1.38621 * 120.24988 * 179.97438 * 14 13 10 16 16 C 1.38650 * 120.49554 * 0.02562 * 15 14 13 17 17 C 1.37599 * 120.25674 * 0.03077 * 16 15 14 18 18 C 1.40692 * 120.12745 * 293.29362 * 13 10 7 19 19 C 1.41391 * 120.24594 * 359.97438 * 18 13 10 20 20 H 1.08008 * 119.99723 * 323.68512 * 19 18 13 21 21 C 1.39941 * 120.00255 * 143.68547 * 19 18 13 22 22 N 1.30826 * 120.00160 * 4.16568 * 21 19 18 23 23 Si 1.86808 * 120.00187 * 184.17172 * 21 19 18 24 24 H 1.48494 * 109.47276 * 89.99667 * 23 21 19 25 25 H 1.48502 * 109.46965 * 209.99837 * 23 21 19 26 26 H 1.48503 * 109.46685 * 329.99530 * 23 21 19 27 27 H 1.09000 * 109.47088 * 59.99961 * 1 2 3 28 28 H 1.09004 * 109.47323 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.46950 * 300.00186 * 1 2 3 30 30 H 1.09004 * 109.47297 * 239.99794 * 2 1 3 31 31 H 1.09002 * 109.47010 * 120.00816 * 2 1 3 32 32 H 1.08996 * 109.47208 * 60.00719 * 6 4 3 33 33 H 1.08998 * 109.47516 * 300.00370 * 6 4 3 34 34 H 1.09001 * 109.47110 * 204.99764 * 8 7 6 35 35 H 1.09000 * 109.47178 * 325.00042 * 8 7 6 36 36 H 1.09002 * 109.47417 * 60.00105 * 9 8 7 37 37 H 1.09008 * 109.47151 * 179.97438 * 9 8 7 38 38 H 1.08997 * 109.47934 * 299.99847 * 9 8 7 39 39 H 1.08006 * 119.87988 * 0.02562 * 14 13 10 40 40 H 1.07998 * 119.74745 * 180.02562 * 15 14 13 41 41 H 1.08003 * 119.87211 * 180.02562 * 16 15 14 42 42 H 1.07990 * 120.13199 * 179.97438 * 17 16 15 43 43 H 0.96995 * 120.00230 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9373 0.0012 7 7 5.3838 2.8606 0.0010 8 6 6.1112 2.7426 1.2673 9 6 6.1803 1.2712 1.6805 10 16 6.2153 2.9073 -1.4302 11 8 7.3853 2.1235 -1.2403 12 8 5.2650 2.6497 -2.4549 13 6 6.7604 4.5666 -1.6629 14 6 8.1043 4.8626 -1.6351 15 6 8.5360 6.1671 -1.8184 16 6 7.6217 7.1875 -2.0309 17 6 6.2733 6.9150 -2.0614 18 6 5.8240 5.5932 -1.8835 19 6 4.4413 5.3000 -1.9204 20 1 4.0972 4.3731 -2.3552 21 6 3.5186 6.2108 -1.3935 22 7 3.9273 7.3683 -0.9411 23 14 1.7032 5.7737 -1.3362 24 1 1.3969 5.0992 -0.0492 25 1 0.8921 7.0123 -1.4513 26 1 1.3778 4.8624 -2.4626 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5140 0.8899 32 1 3.5846 3.4691 0.8912 33 1 3.5851 3.4698 -0.8887 34 1 7.1213 3.1332 1.1439 35 1 5.5929 3.3126 2.0385 36 1 6.6985 0.7011 0.9094 37 1 6.7219 1.1833 2.6224 38 1 5.1703 0.8805 1.8040 39 1 8.8253 4.0754 -1.4708 40 1 9.5924 6.3901 -1.7954 41 1 7.9692 8.2002 -2.1729 42 1 5.5629 7.7114 -2.2266 43 1 3.2877 7.9997 -0.5763 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601313684.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:36 Heat of formation + Delta-G solvation = -139.251507 kcal Electronic energy + Delta-G solvation = -29633.031507 eV Core-core repulsion = 25577.398870 eV Total energy + Delta-G solvation = -4055.632637 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.22361 -37.69216 -36.96866 -36.43018 -35.53457 -34.91712 -33.91836 -31.84350 -30.62607 -30.25401 -29.61699 -27.08124 -25.58714 -23.26416 -22.35401 -21.72364 -21.19611 -20.93599 -18.21111 -17.77881 -17.54477 -17.24885 -16.53808 -16.21091 -16.02088 -15.37603 -15.23603 -14.40627 -14.26403 -14.08745 -13.46169 -13.43157 -13.23796 -13.16513 -12.90721 -12.79442 -12.61211 -12.30976 -12.10065 -11.90949 -11.76364 -11.57721 -11.40454 -11.32837 -11.25258 -11.21117 -11.12747 -10.84915 -10.61482 -10.58132 -10.46233 -10.32950 -10.21807 -9.98267 -9.58131 -9.24787 -8.67706 -8.10969 -7.58236 -7.02834 -4.89863 1.33854 2.24381 2.49407 2.66433 2.84758 2.93381 3.00125 3.01173 3.70927 3.73449 4.34392 4.69733 4.89050 4.91049 5.00591 5.06047 5.14702 5.25544 5.33298 5.54199 5.63108 5.67180 5.73431 5.79261 5.85279 5.91238 5.96219 6.00806 6.14002 6.18516 6.32272 6.49255 6.59795 6.70635 6.75972 6.90770 6.93369 7.10144 7.26866 7.43579 7.67165 7.72864 7.86626 8.04169 8.28089 8.46383 8.58173 9.87792 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011234 B = 0.006204 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.922242 B = 4512.239695 C = 6258.190882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.360 6.360 4 C 0.442 3.558 5 O -0.498 6.498 6 C 0.128 3.872 7 N -0.973 5.973 8 C 0.125 3.875 9 C -0.169 4.169 10 S 2.704 3.296 11 O -0.984 6.984 12 O -0.970 6.970 13 C -0.767 4.767 14 C -0.010 4.010 15 C -0.238 4.238 16 C -0.079 4.079 17 C -0.151 4.151 18 C 0.194 3.806 19 C -0.493 4.493 20 H 0.116 0.884 21 C 0.081 3.919 22 N -0.787 5.787 23 Si 0.891 3.109 24 H -0.254 1.254 25 H -0.271 1.271 26 H -0.249 1.249 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.117 0.883 33 H 0.145 0.855 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.110 0.890 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.133 0.867 43 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.214 -5.252 5.844 9.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 O -0.277 6.277 4 C 0.283 3.717 5 O -0.385 6.385 6 C 0.000 4.000 7 N -0.807 5.807 8 C -0.001 4.001 9 C -0.228 4.228 10 S 2.803 3.197 11 O -0.975 6.975 12 O -0.961 6.961 13 C -0.862 4.862 14 C -0.030 4.030 15 C -0.259 4.259 16 C -0.097 4.097 17 C -0.171 4.171 18 C 0.189 3.811 19 C -0.522 4.522 20 H 0.133 0.867 21 C -0.139 4.139 22 N -0.411 5.411 23 Si 0.714 3.286 24 H -0.178 1.178 25 H -0.196 1.196 26 H -0.172 1.172 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.135 0.865 33 H 0.162 0.838 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.128 0.872 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.151 0.849 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.982 -6.105 5.437 9.573 hybrid contribution -0.612 0.649 0.324 0.949 sum -5.594 -5.456 5.760 9.708 Atomic orbital electron populations 1.21802 0.92897 1.02659 1.03580 1.22980 0.95168 0.80812 1.02490 1.86525 1.24905 1.31951 1.84285 1.24883 0.80425 0.94196 0.72242 1.90621 1.60153 1.43031 1.44715 1.21093 0.80773 0.89489 1.08607 1.57358 1.11988 1.88379 1.22968 1.21218 0.96572 0.97063 0.85219 1.22278 1.02565 0.96833 1.01087 1.01166 0.72312 0.74432 0.71784 1.93449 1.49286 1.69087 1.85653 1.93470 1.62337 1.85709 1.54551 1.30008 1.01666 1.22251 1.32319 1.20287 0.93261 0.96165 0.93252 1.20583 0.97679 0.93350 1.14244 1.21007 0.94305 0.97105 0.97324 1.21738 0.93986 0.98107 1.03250 1.17067 0.91485 0.90400 0.82116 1.20429 0.90877 1.06244 1.34678 0.86697 1.25961 1.01606 0.93666 0.92652 1.69739 1.37376 1.05918 1.28086 0.86527 0.80755 0.80008 0.81352 1.17782 1.19559 1.17194 0.91356 0.90501 0.91571 0.91209 0.91463 0.86522 0.83832 0.89995 0.90730 0.91497 0.92645 0.92050 0.87237 0.88475 0.88594 0.84945 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.29 37.16 0.38 -1.04 16 2 C 0.06 0.75 6.19 37.16 0.23 0.98 16 3 O -0.36 -5.73 10.22 -39.25 -0.40 -6.13 16 4 C 0.44 7.93 7.71 36.00 0.28 8.21 16 5 O -0.50 -9.72 13.30 -18.75 -0.25 -9.97 16 6 C 0.13 2.32 5.55 -5.19 -0.03 2.30 16 7 N -0.97 -18.80 2.42 -115.66 -0.28 -19.08 16 8 C 0.12 2.02 6.09 -4.04 -0.02 2.00 16 9 C -0.17 -2.63 9.15 37.16 0.34 -2.29 16 10 S 2.70 61.37 5.02 -107.50 -0.54 60.83 16 11 O -0.98 -23.15 16.01 -57.17 -0.92 -24.06 16 12 O -0.97 -23.99 14.54 -57.17 -0.83 -24.82 16 13 C -0.77 -18.15 5.97 -38.88 -0.23 -18.38 16 14 C -0.01 -0.22 9.53 -39.66 -0.38 -0.60 16 15 C -0.24 -5.06 10.05 -39.29 -0.39 -5.46 16 16 C -0.08 -1.70 10.02 -39.66 -0.40 -2.10 16 17 C -0.15 -3.61 8.66 -38.87 -0.34 -3.95 16 18 C 0.19 4.78 5.53 -106.83 -0.59 4.19 16 19 C -0.49 -11.78 6.26 -37.75 -0.24 -12.01 16 20 H 0.12 2.79 4.39 -52.48 -0.23 2.56 16 21 C 0.08 1.80 5.42 -17.34 -0.09 1.70 16 22 N -0.79 -17.79 10.70 55.55 0.59 -17.20 16 23 Si 0.89 16.59 28.44 -169.99 -4.84 11.75 16 24 H -0.25 -4.37 7.11 56.52 0.40 -3.97 16 25 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 26 H -0.25 -4.71 7.11 56.52 0.40 -4.31 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 31 H 0.07 0.79 8.13 -51.93 -0.42 0.36 16 32 H 0.12 1.74 7.99 -51.93 -0.41 1.33 16 33 H 0.14 2.83 3.16 -51.93 -0.16 2.67 16 34 H 0.08 1.31 7.82 -51.93 -0.41 0.91 16 35 H 0.07 1.01 7.99 -51.93 -0.41 0.59 16 36 H 0.07 1.19 7.92 -51.93 -0.41 0.78 16 37 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 38 H 0.06 0.97 6.01 -51.93 -0.31 0.66 16 39 H 0.11 2.26 7.32 -52.48 -0.38 1.88 16 40 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 41 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 42 H 0.13 3.21 6.26 -52.49 -0.33 2.88 16 43 H 0.29 5.87 8.30 -40.82 -0.34 5.53 16 LS Contribution 360.50 15.07 5.43 5.43 Total: -1.00 -29.27 360.50 -9.09 -38.36 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -5.58 Total: 11.34 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: -1.48 Total: -26.46 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.31 Total: -36.28 kcal Atomic # 8 Polarization: -62.58 SS G_CDS: -2.40 Total: -64.98 kcal Atomic # 14 Polarization: 16.59 SS G_CDS: -4.84 Total: 11.75 kcal Atomic # 16 Polarization: 61.37 SS G_CDS: -0.54 Total: 60.83 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.27 -9.09 -38.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601313684.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.888 kcal (2) G-P(sol) polarization free energy of solvation -29.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds