Wall clock time and date at job start Sat Apr 11 2020 06:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47372 * 2 1 4 4 C 1.46493 * 120.00094 * 85.00194 * 3 2 1 5 5 C 1.53004 * 109.47063 * 274.55851 * 4 3 2 6 6 C 1.50698 * 109.46964 * 180.02562 * 5 4 3 7 7 O 1.20827 * 120.00490 * 359.97438 * 6 5 4 8 8 O 1.34232 * 120.00039 * 180.02562 * 6 5 4 9 9 C 1.45195 * 117.00186 * 179.97438 * 8 6 5 10 10 S 1.65598 * 119.99668 * 264.99885 * 3 2 1 11 11 O 1.42100 * 106.40470 * 31.53293 * 10 3 2 12 12 O 1.42100 * 106.40049 * 164.45344 * 10 3 2 13 13 C 1.76198 * 107.22001 * 277.99276 * 10 3 2 14 14 C 1.37635 * 120.13117 * 113.60206 * 13 10 3 15 15 C 1.38611 * 120.25380 * 179.97438 * 14 13 10 16 16 C 1.38660 * 120.49592 * 0.02562 * 15 14 13 17 17 C 1.37595 * 120.25147 * 0.02562 * 16 15 14 18 18 C 1.40698 * 120.12751 * 293.32387 * 13 10 3 19 19 C 1.41396 * 120.24477 * 359.97438 * 18 13 10 20 20 H 1.08001 * 119.99977 * 323.90751 * 19 18 13 21 21 C 1.39941 * 120.00281 * 143.91133 * 19 18 13 22 22 N 1.30826 * 120.00160 * 4.06097 * 21 19 18 23 23 Si 1.86808 * 120.00187 * 184.06701 * 21 19 18 24 24 H 1.48494 * 109.47276 * 89.99667 * 23 21 19 25 25 H 1.48502 * 109.46965 * 209.99837 * 23 21 19 26 26 H 1.48503 * 109.46685 * 329.99530 * 23 21 19 27 27 H 1.09003 * 109.46712 * 300.00482 * 1 2 3 28 28 H 1.08999 * 109.46856 * 59.99783 * 1 2 3 29 29 H 1.08994 * 109.47638 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46712 * 239.99518 * 2 1 3 31 31 H 1.08999 * 109.46856 * 120.00217 * 2 1 3 32 32 H 1.09003 * 109.47019 * 34.55830 * 4 3 2 33 33 H 1.09002 * 109.47171 * 154.55524 * 4 3 2 34 34 H 1.09002 * 109.46704 * 299.99659 * 5 4 3 35 35 H 1.08995 * 109.47030 * 59.99810 * 5 4 3 36 36 H 1.09002 * 109.47034 * 179.97438 * 9 8 6 37 37 H 1.09000 * 109.47330 * 300.00173 * 9 8 6 38 38 H 1.08997 * 109.47086 * 60.00304 * 9 8 6 39 39 H 1.08005 * 119.87125 * 359.97438 * 14 13 10 40 40 H 1.07997 * 119.75498 * 179.97438 * 15 14 13 41 41 H 1.07999 * 119.87098 * 180.02562 * 16 15 14 42 42 H 1.07999 * 120.12406 * 179.97438 * 17 16 15 43 43 H 0.96995 * 120.00230 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1584 2.1086 1.2638 5 6 0.8187 2.7475 1.6357 6 6 0.9629 3.4963 2.9354 7 8 2.0277 3.5166 3.5062 8 8 -0.0918 4.1400 3.4598 9 6 0.1199 4.8398 4.7142 10 16 2.4123 2.1200 -1.4287 11 8 1.5504 1.5703 -2.4158 12 8 2.4898 3.5118 -1.1526 13 6 4.0437 1.6048 -1.8500 14 6 4.2554 0.8213 -2.9616 15 6 5.5378 0.4149 -3.2957 16 6 6.6208 0.7913 -2.5158 17 6 6.4327 1.5735 -1.3995 18 6 5.1359 1.9976 -1.0547 19 6 4.9313 2.8078 0.0860 20 1 4.1733 3.5770 0.0731 21 6 5.7111 2.6130 1.2315 22 7 6.6819 1.7361 1.2208 23 14 5.3659 3.6051 2.7763 24 1 4.3855 2.8786 3.6224 25 1 6.6285 3.7961 3.5344 26 1 4.8094 4.9295 2.3999 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.4615 1.4167 2.0497 33 1 2.9138 2.8866 1.1535 34 1 0.5157 3.4394 0.8498 35 1 0.0634 1.9695 1.7459 36 1 -0.8098 5.3160 5.0260 37 1 0.4384 4.1295 5.4772 38 1 0.8899 5.5995 4.5810 39 1 3.4190 0.5219 -3.5759 40 1 5.6946 -0.2001 -4.1694 41 1 7.6157 0.4693 -2.7857 42 1 7.2776 1.8651 -0.7934 43 1 7.2227 1.6014 2.0146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601313996.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:38 Heat of formation + Delta-G solvation = -158.356520 kcal Electronic energy + Delta-G solvation = -29524.684563 eV Core-core repulsion = 25468.223470 eV Total energy + Delta-G solvation = -4056.461093 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.50126 -39.41107 -38.30617 -38.12592 -37.34751 -36.68155 -35.63258 -33.03104 -32.04596 -31.35798 -30.66368 -28.48590 -27.38304 -25.01959 -23.59011 -23.37493 -22.88787 -21.74952 -19.87719 -19.41007 -18.98328 -18.46560 -17.82800 -17.62120 -17.38315 -17.12580 -16.86852 -16.05884 -15.70824 -15.40064 -15.08485 -15.00821 -14.76540 -14.50885 -14.42565 -14.17335 -13.89884 -13.73850 -13.46585 -13.16357 -13.05559 -12.98828 -12.96358 -12.93863 -12.88282 -12.72857 -12.57789 -12.40150 -12.18656 -11.80715 -11.75303 -11.72487 -11.65896 -11.40759 -11.19297 -10.92965 -10.03251 -9.81290 -9.34157 -8.73252 -6.66088 -0.23485 0.50702 0.97666 1.14974 1.34618 1.45637 1.57684 1.69777 2.16659 2.27796 2.64118 2.95351 3.43488 3.63102 3.72439 3.85695 4.07103 4.17374 4.29046 4.31781 4.33570 4.34743 4.48903 4.50871 4.55894 4.70470 4.71680 4.72056 4.94618 4.96795 5.04610 5.10691 5.21023 5.28135 5.30107 5.38234 5.49169 5.54211 5.68326 5.81325 5.91719 5.99129 6.12501 6.52254 6.71981 6.73556 6.83149 8.18934 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011342 B = 0.006094 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.075854 B = 4593.596680 C = 6328.451220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.111 3.889 3 N -0.983 5.983 4 C 0.126 3.874 5 C -0.138 4.138 6 C 0.466 3.534 7 O -0.530 6.530 8 O -0.361 6.361 9 C 0.027 3.973 10 S 2.715 3.285 11 O -0.995 6.995 12 O -0.997 6.997 13 C -0.787 4.787 14 C -0.022 4.022 15 C -0.240 4.240 16 C -0.078 4.078 17 C -0.181 4.181 18 C 0.166 3.834 19 C -0.501 4.501 20 H 0.103 0.897 21 C 0.063 3.937 22 N -0.810 5.810 23 Si 0.938 3.062 24 H -0.229 1.229 25 H -0.271 1.271 26 H -0.273 1.273 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.144 0.856 36 H 0.135 0.865 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.126 0.874 40 H 0.131 0.869 41 H 0.124 0.876 42 H 0.119 0.881 43 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.126 -2.159 5.857 12.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.013 4.013 3 N -0.819 5.819 4 C 0.000 4.000 5 C -0.177 4.177 6 C 0.309 3.691 7 O -0.419 6.419 8 O -0.278 6.278 9 C -0.066 4.066 10 S 2.812 3.188 11 O -0.986 6.986 12 O -0.987 6.987 13 C -0.880 4.880 14 C -0.042 4.042 15 C -0.260 4.260 16 C -0.096 4.096 17 C -0.201 4.201 18 C 0.162 3.838 19 C -0.530 4.530 20 H 0.121 0.879 21 C -0.155 4.155 22 N -0.435 5.435 23 Si 0.760 3.240 24 H -0.152 1.152 25 H -0.196 1.196 26 H -0.198 1.198 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.129 0.871 35 H 0.162 0.838 36 H 0.153 0.847 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.144 0.856 40 H 0.149 0.851 41 H 0.142 0.858 42 H 0.137 0.863 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.193 -1.694 5.756 12.700 hybrid contribution 1.288 0.266 0.784 1.531 sum -9.906 -1.428 6.540 11.956 Atomic orbital electron populations 1.22356 0.94240 1.03838 1.02638 1.21493 0.95756 0.80221 1.03865 1.57221 1.79725 1.24118 1.20833 1.21280 0.95692 0.97220 0.85777 1.22109 1.02010 1.01470 0.92134 1.23878 0.81712 0.76504 0.86974 1.90739 1.29098 1.59748 1.62355 1.86490 1.39187 1.62144 1.39960 1.23556 1.04963 0.96187 0.81941 1.00670 0.73447 0.72656 0.71983 1.93431 1.65672 1.80371 1.59135 1.93436 1.88016 1.32510 1.84787 1.30401 1.20786 1.24023 1.12822 1.20621 0.97823 0.92354 0.93384 1.20986 0.92653 1.08837 1.03537 1.21331 0.98725 0.95451 0.94126 1.21768 0.97741 1.03031 0.97597 1.17347 0.90606 0.87144 0.88703 1.20396 1.18748 1.16843 0.96986 0.87893 1.26358 0.92380 0.94333 1.02424 1.69774 1.14468 1.27949 1.31321 0.85858 0.79147 0.80259 0.78754 1.15168 1.19586 1.19752 0.90783 0.93036 0.89225 0.90915 0.88831 0.89243 0.89643 0.87121 0.83815 0.84720 0.91663 0.92623 0.85612 0.85115 0.85822 0.86343 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.73 10.03 71.98 0.72 -3.01 16 2 C 0.11 3.09 6.09 86.38 0.53 3.61 16 3 N -0.98 -34.73 2.80 -515.79 -1.44 -36.17 16 4 C 0.13 4.44 4.23 86.38 0.37 4.81 16 5 C -0.14 -3.87 5.93 29.85 0.18 -3.69 16 6 C 0.47 13.94 7.96 71.24 0.57 14.50 16 7 O -0.53 -19.20 13.92 21.96 0.31 -18.90 16 8 O -0.36 -8.96 10.56 -51.44 -0.54 -9.50 16 9 C 0.03 0.49 10.56 113.37 1.20 1.69 16 10 S 2.72 117.13 5.01 -56.49 -0.28 116.85 16 11 O -1.00 -42.76 16.01 -128.00 -2.05 -44.81 16 12 O -1.00 -48.04 14.52 -128.00 -1.86 -49.90 16 13 C -0.79 -37.61 5.97 22.73 0.14 -37.47 16 14 C -0.02 -0.97 9.53 22.22 0.21 -0.76 16 15 C -0.24 -9.93 10.05 22.46 0.23 -9.71 16 16 C -0.08 -3.39 10.02 22.22 0.22 -3.17 16 17 C -0.18 -9.12 8.66 22.73 0.20 -8.93 16 18 C 0.17 8.63 5.53 -21.29 -0.12 8.51 16 19 C -0.50 -25.94 6.30 23.46 0.15 -25.80 16 20 H 0.10 5.50 4.36 -2.91 -0.01 5.48 16 21 C 0.06 3.09 5.42 85.26 0.46 3.55 16 22 N -0.81 -39.94 10.69 21.83 0.23 -39.71 16 23 Si 0.94 39.99 27.70 68.60 1.90 41.89 16 24 H -0.23 -9.47 6.14 99.48 0.61 -8.86 16 25 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 26 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 27 H 0.07 1.33 5.70 -2.39 -0.01 1.32 16 28 H 0.05 1.29 7.91 -2.39 -0.02 1.27 16 29 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 30 H 0.07 2.10 7.83 -2.39 -0.02 2.09 16 31 H 0.09 2.24 8.00 -2.39 -0.02 2.23 16 32 H 0.09 2.97 7.96 -2.39 -0.02 2.95 16 33 H 0.09 3.62 3.22 -2.39 -0.01 3.61 16 34 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 35 H 0.14 2.93 5.70 -2.39 -0.01 2.92 16 36 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 38 H 0.05 1.13 8.13 -2.39 -0.02 1.11 16 39 H 0.13 4.97 7.32 -2.91 -0.02 4.95 16 40 H 0.13 4.43 8.06 -2.91 -0.02 4.40 16 41 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 42 H 0.12 6.17 6.24 -2.91 -0.02 6.15 16 43 H 0.29 13.11 8.30 -92.71 -0.77 12.34 16 Total: -1.00 -66.46 357.19 2.25 -64.22 By element: Atomic # 1 Polarization: 30.96 SS G_CDS: 0.95 Total: 31.91 kcal Atomic # 6 Polarization: -60.91 SS G_CDS: 5.04 Total: -55.87 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -1.21 Total: -75.88 kcal Atomic # 8 Polarization: -118.97 SS G_CDS: -4.15 Total: -123.12 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 1.90 Total: 41.89 kcal Atomic # 16 Polarization: 117.13 SS G_CDS: -0.28 Total: 116.85 kcal Total: -66.46 2.25 -64.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601313996.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.139 kcal (2) G-P(sol) polarization free energy of solvation -66.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds