Wall clock time and date at job start Sat Apr 11 2020 06:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45201 * 109.47525 * 2 1 4 4 C 1.34223 * 117.00080 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00283 * 359.97438 * 4 3 2 6 6 C 1.50707 * 119.99807 * 179.97438 * 4 3 2 7 7 H 1.09001 * 109.46901 * 60.00383 * 6 4 3 8 8 C 1.52997 * 109.47228 * 300.00116 * 6 4 3 9 9 N 1.46492 * 109.47163 * 179.97438 * 6 4 3 10 10 C 1.46501 * 119.99897 * 59.99893 * 9 6 4 11 11 S 1.65603 * 120.00504 * 240.00464 * 9 6 4 12 12 O 1.42092 * 106.40760 * 164.64777 * 11 9 6 13 13 O 1.42098 * 106.40185 * 31.72292 * 11 9 6 14 14 C 1.76199 * 107.21322 * 278.18887 * 11 9 6 15 15 C 1.37643 * 120.13213 * 113.34939 * 14 11 9 16 16 C 1.38613 * 120.24898 * 180.31806 * 15 14 11 17 17 C 1.38652 * 120.50386 * 359.66942 * 16 15 14 18 18 C 1.37600 * 120.24558 * 0.02562 * 17 16 15 19 19 C 1.40695 * 120.12697 * 293.04177 * 14 11 9 20 20 C 1.41396 * 120.24361 * 359.97438 * 19 14 11 21 21 H 1.07997 * 120.00133 * 329.37070 * 20 19 14 22 22 C 1.39950 * 119.99910 * 149.37734 * 20 19 14 23 23 N 1.30819 * 119.99669 * 338.36123 * 22 20 19 24 24 Si 1.86800 * 120.00014 * 158.36642 * 22 20 19 25 25 H 1.48499 * 109.47171 * 269.99694 * 24 22 20 26 26 H 1.48504 * 109.47144 * 29.99874 * 24 22 20 27 27 H 1.48501 * 109.47080 * 149.99564 * 24 22 20 28 28 H 1.09001 * 109.47018 * 59.99970 * 1 2 3 29 29 H 1.09005 * 109.47373 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47225 * 299.99992 * 1 2 3 31 31 H 1.09005 * 109.47443 * 240.00096 * 2 1 3 32 32 H 1.09001 * 109.47018 * 120.00030 * 2 1 3 33 33 H 1.09005 * 109.47035 * 300.00328 * 8 6 4 34 34 H 1.09005 * 109.47151 * 59.99900 * 8 6 4 35 35 H 1.08995 * 109.47257 * 179.97438 * 8 6 4 36 36 H 1.09002 * 109.47477 * 270.26821 * 10 9 6 37 37 H 1.09003 * 109.46923 * 30.27457 * 10 9 6 38 38 H 1.09007 * 109.47094 * 150.27020 * 10 9 6 39 39 H 1.08001 * 119.87199 * 0.02562 * 15 14 11 40 40 H 1.08004 * 119.74529 * 179.69405 * 16 15 14 41 41 H 1.07994 * 119.87703 * 180.02562 * 17 16 15 42 42 H 1.08003 * 120.12702 * 180.02562 * 18 17 16 43 43 H 0.96993 * 120.00726 * 353.95477 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5865 0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.5844 3.4700 0.8895 8 6 3.4498 3.6836 -1.2499 9 7 5.3837 2.8607 0.0014 10 6 6.0829 2.1880 -1.0963 11 16 6.2471 3.5342 1.2436 12 8 7.5598 2.9973 1.1574 13 8 5.4355 3.4202 2.4044 14 6 6.3910 5.2573 0.9045 15 6 5.7641 6.1758 1.7156 16 6 5.8702 7.5316 1.4472 17 6 6.6129 7.9788 0.3651 18 6 7.2532 7.0788 -0.4555 19 6 7.1525 5.6999 -0.1927 20 6 7.8067 4.7659 -1.0287 21 1 8.1562 3.8287 -0.6214 22 6 8.0015 5.0560 -2.3838 23 7 7.2468 5.9444 -2.9775 24 14 9.3390 4.1745 -3.3448 25 1 10.6045 4.9461 -3.2534 26 1 9.5442 2.8178 -2.7769 27 1 8.9314 4.0588 -4.7681 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.7861 3.1509 -2.1394 34 1 2.3613 3.7407 -1.2504 35 1 3.8661 4.6909 -1.2500 36 1 6.2051 1.1318 -0.8561 37 1 5.5012 2.2874 -2.0127 38 1 7.0628 2.6443 -1.2367 39 1 5.1834 5.8387 2.5615 40 1 5.3709 8.2450 2.0861 41 1 6.6891 9.0374 0.1656 42 1 7.8316 7.4293 -1.2976 43 1 6.4970 6.3379 -2.5045 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601343209.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:07 Heat of formation + Delta-G solvation = -143.811818 kcal Electronic energy + Delta-G solvation = -29433.293493 eV Core-core repulsion = 25377.463106 eV Total energy + Delta-G solvation = -4055.830387 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.46791 -37.93322 -37.11968 -36.50844 -35.67554 -35.01165 -34.15307 -31.99705 -30.51638 -30.27238 -29.52682 -26.29544 -25.35740 -24.54838 -22.76515 -21.88283 -21.29351 -20.66628 -18.56840 -18.17118 -17.72115 -17.09418 -16.66691 -16.30814 -16.07045 -15.22196 -14.98073 -14.51394 -14.28436 -14.13647 -13.73478 -13.61956 -13.39789 -13.29589 -12.93503 -12.75531 -12.47388 -12.30014 -12.18692 -11.93811 -11.85237 -11.66492 -11.56540 -11.42428 -11.31495 -11.22909 -11.20188 -11.01533 -10.91440 -10.56784 -10.54430 -10.49382 -10.22725 -9.88233 -9.40918 -9.25455 -8.58792 -8.29107 -7.87307 -7.49586 -4.92531 1.26608 2.14544 2.32966 2.58208 2.69087 3.06030 3.13684 3.26208 3.63556 3.81748 4.26706 4.61236 4.65830 4.79195 4.86309 4.97502 5.07380 5.12622 5.14284 5.24848 5.47660 5.57193 5.61661 5.79356 5.85011 5.87472 5.88423 5.99244 6.19907 6.22679 6.28318 6.47059 6.48533 6.54930 6.58335 6.81019 6.98157 7.09336 7.23267 7.33361 7.51987 7.61874 7.76461 7.88553 7.91919 8.32386 8.51891 9.73553 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012077 B = 0.004914 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.890784 B = 5697.130516 C = 6607.583127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.358 6.358 4 C 0.456 3.544 5 O -0.495 6.495 6 C 0.167 3.833 7 H 0.129 0.871 8 C -0.156 4.156 9 N -0.977 5.977 10 C 0.085 3.915 11 S 2.704 3.296 12 O -0.962 6.962 13 O -0.995 6.995 14 C -0.781 4.781 15 C 0.011 3.989 16 C -0.258 4.258 17 C -0.056 4.056 18 C -0.207 4.207 19 C 0.173 3.827 20 C -0.528 4.528 21 H 0.119 0.881 22 C 0.045 3.955 23 N -0.778 5.778 24 Si 1.058 2.942 25 H -0.270 1.270 26 H -0.266 1.266 27 H -0.273 1.273 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.111 0.889 43 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.630 -5.368 -0.771 11.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.275 6.275 4 C 0.296 3.704 5 O -0.381 6.381 6 C 0.057 3.943 7 H 0.146 0.854 8 C -0.215 4.215 9 N -0.812 5.812 10 C -0.059 4.059 11 S 2.804 3.196 12 O -0.953 6.953 13 O -0.985 6.985 14 C -0.876 4.876 15 C -0.009 4.009 16 C -0.279 4.279 17 C -0.075 4.075 18 C -0.227 4.227 19 C 0.168 3.832 20 C -0.555 4.555 21 H 0.136 0.864 22 C -0.180 4.180 23 N -0.399 5.399 24 Si 0.880 3.120 25 H -0.196 1.196 26 H -0.190 1.190 27 H -0.198 1.198 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.119 0.881 39 H 0.128 0.872 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.129 0.871 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.394 -6.264 -1.582 10.593 hybrid contribution -0.882 0.785 1.125 1.631 sum -9.277 -5.479 -0.458 10.784 Atomic orbital electron populations 1.21794 0.92729 1.02763 1.03548 1.22996 0.95244 0.80648 1.02536 1.86513 1.24701 1.32080 1.84224 1.24406 0.80441 0.93280 0.72298 1.90631 1.60247 1.42804 1.44373 1.20216 0.81461 0.89465 1.03115 0.85395 1.22101 1.01701 1.01787 0.95867 1.57382 1.11424 1.70966 1.41410 1.21852 0.98548 0.97091 0.88438 1.01103 0.72656 0.74552 0.71325 1.93480 1.36749 1.79327 1.85737 1.93441 1.70422 1.87869 1.46806 1.29791 1.21518 1.20880 1.15404 1.20325 0.92653 0.93174 0.94764 1.20476 1.10135 0.94812 1.02436 1.20860 0.94873 0.97678 0.94080 1.21371 1.05364 0.93356 1.02575 1.17011 0.85415 0.92437 0.88323 1.21564 1.31714 1.06162 0.96073 0.86351 1.27111 0.99746 0.94964 0.96153 1.70440 1.11306 1.17100 1.41078 0.83727 0.75099 0.77144 0.76013 1.19554 1.18986 1.19777 0.91477 0.90444 0.91434 0.91344 0.91313 0.91422 0.90628 0.89706 0.92676 0.92014 0.88137 0.87224 0.88384 0.88544 0.87126 0.88413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.29 37.15 0.38 -0.79 16 2 C 0.06 0.66 6.19 37.15 0.23 0.89 16 3 O -0.36 -4.95 10.12 -39.24 -0.40 -5.34 16 4 C 0.46 7.45 7.15 36.01 0.26 7.71 16 5 O -0.49 -9.21 14.48 -18.75 -0.27 -9.48 16 6 C 0.17 2.75 3.12 -69.08 -0.22 2.54 16 7 H 0.13 2.02 7.14 -51.93 -0.37 1.65 16 8 C -0.16 -2.20 9.10 37.16 0.34 -1.86 16 9 N -0.98 -18.87 2.85 -115.85 -0.33 -19.20 16 10 C 0.09 1.58 8.80 59.85 0.53 2.11 16 11 S 2.70 60.06 5.05 -107.50 -0.54 59.52 16 12 O -0.96 -23.68 14.57 -57.18 -0.83 -24.51 16 13 O -0.99 -22.71 15.81 -57.18 -0.90 -23.61 16 14 C -0.78 -17.90 5.97 -38.87 -0.23 -18.13 16 15 C 0.01 0.23 9.54 -39.66 -0.38 -0.15 16 16 C -0.26 -5.30 10.05 -39.29 -0.39 -5.69 16 17 C -0.06 -1.17 10.02 -39.66 -0.40 -1.57 16 18 C -0.21 -4.78 7.90 -38.87 -0.31 -5.09 16 19 C 0.17 4.15 5.21 -106.82 -0.56 3.60 16 20 C -0.53 -12.53 6.36 -37.74 -0.24 -12.77 16 21 H 0.12 2.89 4.04 -52.49 -0.21 2.68 16 22 C 0.04 1.01 5.00 -17.34 -0.09 0.92 16 23 N -0.78 -17.97 12.44 55.55 0.69 -17.28 16 24 Si 1.06 19.84 29.98 -169.99 -5.10 14.75 16 25 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 26 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 27 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 33 H 0.07 0.94 6.67 -51.93 -0.35 0.59 16 34 H 0.07 0.87 8.11 -51.93 -0.42 0.45 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.05 1.01 7.20 -51.93 -0.37 0.63 16 37 H 0.06 1.01 6.43 -51.93 -0.33 0.68 16 38 H 0.10 2.01 4.29 -51.93 -0.22 1.79 16 39 H 0.11 2.17 7.32 -52.49 -0.38 1.79 16 40 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 41 H 0.10 1.75 8.06 -52.49 -0.42 1.32 16 42 H 0.11 2.59 6.73 -52.48 -0.35 2.24 16 43 H 0.30 7.09 6.61 -40.82 -0.27 6.82 16 LS Contribution 360.83 15.07 5.44 5.44 Total: -1.00 -29.09 360.83 -8.79 -37.88 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -5.47 Total: 10.13 kcal Atomic # 6 Polarization: -27.22 SS G_CDS: -1.07 Total: -28.30 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.36 Total: -36.48 kcal Atomic # 8 Polarization: -60.53 SS G_CDS: -2.41 Total: -62.94 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.10 Total: 14.75 kcal Atomic # 16 Polarization: 60.06 SS G_CDS: -0.54 Total: 59.52 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.09 -8.79 -37.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601343209.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.933 kcal (2) G-P(sol) polarization free energy of solvation -29.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds