Wall clock time and date at job start Sat Apr 11 2020 06:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45201 * 109.47525 * 2 1 4 4 C 1.34223 * 117.00080 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00283 * 359.97438 * 4 3 2 6 6 C 1.50707 * 119.99807 * 179.97438 * 4 3 2 7 7 H 1.09001 * 109.46901 * 60.00383 * 6 4 3 8 8 C 1.52997 * 109.47228 * 300.00116 * 6 4 3 9 9 N 1.46492 * 109.47163 * 179.97438 * 6 4 3 10 10 C 1.46501 * 119.99897 * 59.99893 * 9 6 4 11 11 S 1.65603 * 120.00504 * 240.00464 * 9 6 4 12 12 O 1.42092 * 106.40760 * 164.64777 * 11 9 6 13 13 O 1.42098 * 106.40185 * 31.72292 * 11 9 6 14 14 C 1.76199 * 107.21322 * 278.18887 * 11 9 6 15 15 C 1.37643 * 120.13213 * 113.34939 * 14 11 9 16 16 C 1.38613 * 120.24898 * 180.31806 * 15 14 11 17 17 C 1.38652 * 120.50386 * 359.66942 * 16 15 14 18 18 C 1.37600 * 120.24558 * 0.02562 * 17 16 15 19 19 C 1.40695 * 120.12697 * 293.04177 * 14 11 9 20 20 C 1.41396 * 120.24361 * 359.97438 * 19 14 11 21 21 H 1.07997 * 120.00133 * 329.37070 * 20 19 14 22 22 C 1.39950 * 119.99910 * 149.37734 * 20 19 14 23 23 N 1.30819 * 119.99669 * 338.36123 * 22 20 19 24 24 Si 1.86800 * 120.00014 * 158.36642 * 22 20 19 25 25 H 1.48499 * 109.47171 * 269.99694 * 24 22 20 26 26 H 1.48504 * 109.47144 * 29.99874 * 24 22 20 27 27 H 1.48501 * 109.47080 * 149.99564 * 24 22 20 28 28 H 1.09001 * 109.47018 * 59.99970 * 1 2 3 29 29 H 1.09005 * 109.47373 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47225 * 299.99992 * 1 2 3 31 31 H 1.09005 * 109.47443 * 240.00096 * 2 1 3 32 32 H 1.09001 * 109.47018 * 120.00030 * 2 1 3 33 33 H 1.09005 * 109.47035 * 300.00328 * 8 6 4 34 34 H 1.09005 * 109.47151 * 59.99900 * 8 6 4 35 35 H 1.08995 * 109.47257 * 179.97438 * 8 6 4 36 36 H 1.09002 * 109.47477 * 270.26821 * 10 9 6 37 37 H 1.09003 * 109.46923 * 30.27457 * 10 9 6 38 38 H 1.09007 * 109.47094 * 150.27020 * 10 9 6 39 39 H 1.08001 * 119.87199 * 0.02562 * 15 14 11 40 40 H 1.08004 * 119.74529 * 179.69405 * 16 15 14 41 41 H 1.07994 * 119.87703 * 180.02562 * 17 16 15 42 42 H 1.08003 * 120.12702 * 180.02562 * 18 17 16 43 43 H 0.96993 * 120.00726 * 353.95477 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5865 0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.5844 3.4700 0.8895 8 6 3.4498 3.6836 -1.2499 9 7 5.3837 2.8607 0.0014 10 6 6.0829 2.1880 -1.0963 11 16 6.2471 3.5342 1.2436 12 8 7.5598 2.9973 1.1574 13 8 5.4355 3.4202 2.4044 14 6 6.3910 5.2573 0.9045 15 6 5.7641 6.1758 1.7156 16 6 5.8702 7.5316 1.4472 17 6 6.6129 7.9788 0.3651 18 6 7.2532 7.0788 -0.4555 19 6 7.1525 5.6999 -0.1927 20 6 7.8067 4.7659 -1.0287 21 1 8.1562 3.8287 -0.6214 22 6 8.0015 5.0560 -2.3838 23 7 7.2468 5.9444 -2.9775 24 14 9.3390 4.1745 -3.3448 25 1 10.6045 4.9461 -3.2534 26 1 9.5442 2.8178 -2.7769 27 1 8.9314 4.0588 -4.7681 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.7861 3.1509 -2.1394 34 1 2.3613 3.7407 -1.2504 35 1 3.8661 4.6909 -1.2500 36 1 6.2051 1.1318 -0.8561 37 1 5.5012 2.2874 -2.0127 38 1 7.0628 2.6443 -1.2367 39 1 5.1834 5.8387 2.5615 40 1 5.3709 8.2450 2.0861 41 1 6.6891 9.0374 0.1656 42 1 7.8316 7.4293 -1.2976 43 1 6.4970 6.3379 -2.5045 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601343209.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:07 Heat of formation + Delta-G solvation = -160.461774 kcal Electronic energy + Delta-G solvation = -29434.015490 eV Core-core repulsion = 25377.463106 eV Total energy + Delta-G solvation = -4056.552383 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.71243 -39.64422 -38.38823 -38.29488 -37.04466 -36.83603 -35.85734 -32.94447 -31.99854 -31.71277 -31.23081 -27.77189 -27.00837 -25.74870 -23.81518 -23.50297 -22.99011 -21.95142 -20.25722 -19.80134 -19.17314 -18.57625 -17.95536 -17.73356 -17.48618 -16.85514 -16.60427 -16.05229 -15.67460 -15.41801 -15.35361 -15.07425 -14.83870 -14.59029 -14.49310 -14.12672 -13.73336 -13.59254 -13.49758 -13.32865 -13.18008 -13.11815 -12.98026 -12.87701 -12.86813 -12.77393 -12.65154 -12.47954 -12.42967 -12.18525 -11.94784 -11.57860 -11.55567 -11.53519 -11.09126 -10.95921 -10.12280 -9.97373 -9.61053 -9.25293 -6.70236 -0.42907 0.41135 0.87767 1.04903 1.51556 1.53093 1.61992 1.80665 2.06124 2.27072 2.58242 2.88171 3.28243 3.47054 3.54547 3.76724 3.89086 4.00813 4.08685 4.09811 4.23913 4.34548 4.35415 4.59202 4.64095 4.71988 4.74627 4.80145 4.82509 4.93972 4.99189 5.00507 5.11091 5.14333 5.23844 5.37094 5.40716 5.47229 5.51041 5.62872 5.79846 5.86825 6.01560 6.18850 6.58564 6.64834 6.77131 7.97032 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012077 B = 0.004914 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.890784 B = 5697.130516 C = 6607.583127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.049 3.951 3 O -0.353 6.353 4 C 0.461 3.539 5 O -0.523 6.523 6 C 0.157 3.843 7 H 0.134 0.866 8 C -0.147 4.147 9 N -0.977 5.977 10 C 0.087 3.913 11 S 2.714 3.286 12 O -0.993 6.993 13 O -1.005 7.005 14 C -0.792 4.792 15 C -0.002 4.002 16 C -0.253 4.253 17 C -0.052 4.052 18 C -0.229 4.229 19 C 0.154 3.846 20 C -0.547 4.547 21 H 0.107 0.893 22 C 0.024 3.976 23 N -0.789 5.789 24 Si 1.091 2.909 25 H -0.265 1.265 26 H -0.260 1.260 27 H -0.262 1.262 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.125 0.875 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.100 0.900 43 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.315 -5.067 -1.028 12.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 O -0.269 6.269 4 C 0.302 3.698 5 O -0.411 6.411 6 C 0.048 3.952 7 H 0.152 0.848 8 C -0.206 4.206 9 N -0.813 5.813 10 C -0.058 4.058 11 S 2.814 3.186 12 O -0.984 6.984 13 O -0.996 6.996 14 C -0.887 4.887 15 C -0.022 4.022 16 C -0.273 4.273 17 C -0.071 4.071 18 C -0.249 4.249 19 C 0.149 3.851 20 C -0.573 4.573 21 H 0.124 0.876 22 C -0.197 4.197 23 N -0.410 5.410 24 Si 0.909 3.091 25 H -0.190 1.190 26 H -0.184 1.184 27 H -0.186 1.186 28 H 0.091 0.909 29 H 0.119 0.881 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.124 0.876 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.143 0.857 40 H 0.150 0.850 41 H 0.145 0.855 42 H 0.118 0.882 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.112 -5.947 -1.825 11.872 hybrid contribution -0.495 0.710 1.305 1.566 sum -10.607 -5.238 -0.519 11.841 Atomic orbital electron populations 1.21819 0.89915 1.04442 1.03903 1.23363 0.97393 0.79112 1.02535 1.86502 1.22950 1.33958 1.83517 1.24243 0.81190 0.92685 0.71695 1.90622 1.61083 1.43526 1.45861 1.20501 0.79779 0.90291 1.04599 0.84846 1.22062 1.03463 1.00457 0.94597 1.57113 1.12774 1.70682 1.40780 1.21833 0.98211 0.96664 0.89052 1.00612 0.72106 0.74402 0.71529 1.93433 1.38735 1.79872 1.86363 1.93412 1.70424 1.88013 1.47761 1.29935 1.21805 1.21447 1.15510 1.20645 0.92743 0.93728 0.95060 1.20896 1.09145 0.95002 1.02255 1.21225 0.93554 0.99007 0.93302 1.21395 1.06689 0.93532 1.03305 1.17262 0.85822 0.93098 0.88894 1.21565 1.32978 1.05994 0.96802 0.87583 1.28019 1.00473 0.94782 0.96421 1.70512 1.11569 1.18017 1.40929 0.83331 0.73442 0.76710 0.75657 1.19030 1.18373 1.18612 0.90886 0.88093 0.91275 0.91075 0.91743 0.91283 0.87633 0.91064 0.92749 0.90041 0.89708 0.85718 0.84979 0.85466 0.88151 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 10.29 71.98 0.74 -1.12 16 2 C 0.05 1.01 6.19 71.98 0.45 1.45 16 3 O -0.35 -9.17 10.12 -51.35 -0.52 -9.69 16 4 C 0.46 14.67 7.15 71.24 0.51 15.18 16 5 O -0.52 -19.31 14.48 21.97 0.32 -18.99 16 6 C 0.16 5.06 3.12 44.25 0.14 5.20 16 7 H 0.13 4.12 7.14 -2.39 -0.02 4.10 16 8 C -0.15 -3.97 9.10 71.98 0.66 -3.32 16 9 N -0.98 -37.94 2.85 -520.44 -1.48 -39.42 16 10 C 0.09 3.27 8.80 127.77 1.12 4.39 16 11 S 2.71 122.17 5.05 -56.49 -0.29 121.88 16 12 O -0.99 -50.33 14.57 -128.00 -1.87 -52.19 16 13 O -1.01 -45.97 15.81 -128.00 -2.02 -47.99 16 14 C -0.79 -36.41 5.97 22.73 0.14 -36.27 16 15 C 0.00 -0.08 9.54 22.22 0.21 0.13 16 16 C -0.25 -9.77 10.05 22.46 0.23 -9.54 16 17 C -0.05 -2.10 10.02 22.22 0.22 -1.87 16 18 C -0.23 -10.60 7.90 22.73 0.18 -10.42 16 19 C 0.15 7.48 5.21 -21.29 -0.11 7.37 16 20 C -0.55 -26.49 6.36 23.46 0.15 -26.34 16 21 H 0.11 5.36 4.04 -2.91 -0.01 5.35 16 22 C 0.02 1.09 5.00 85.26 0.43 1.52 16 23 N -0.79 -36.73 12.44 21.83 0.27 -36.46 16 24 Si 1.09 39.91 29.98 68.60 2.06 41.97 16 25 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 26 H -0.26 -9.16 7.11 99.48 0.71 -8.46 16 27 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.06 1.37 8.13 -2.39 -0.02 1.35 16 33 H 0.07 1.83 6.67 -2.38 -0.02 1.81 16 34 H 0.11 2.19 8.11 -2.38 -0.02 2.17 16 35 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.05 2.03 7.20 -2.39 -0.02 2.01 16 37 H 0.08 2.67 6.43 -2.39 -0.02 2.66 16 38 H 0.08 3.49 4.29 -2.38 -0.01 3.48 16 39 H 0.12 4.76 7.32 -2.91 -0.02 4.74 16 40 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 41 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 42 H 0.10 4.76 6.73 -2.91 -0.02 4.74 16 43 H 0.29 13.97 6.61 -92.71 -0.61 13.36 16 Total: -1.00 -62.57 360.83 2.72 -59.85 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: 1.20 Total: 34.69 kcal Atomic # 6 Polarization: -58.70 SS G_CDS: 5.05 Total: -53.64 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -1.21 Total: -75.88 kcal Atomic # 8 Polarization: -124.78 SS G_CDS: -4.09 Total: -128.87 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.06 Total: 41.97 kcal Atomic # 16 Polarization: 122.17 SS G_CDS: -0.29 Total: 121.88 kcal Total: -62.57 2.72 -59.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601343209.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.611 kcal (2) G-P(sol) polarization free energy of solvation -62.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds