Wall clock time and date at job start Sat Apr 11 2020 06:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45201 * 109.47380 * 2 1 4 4 C 1.34225 * 117.00034 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00060 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00015 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.47261 * 59.99967 * 6 4 3 8 8 C 1.53007 * 109.47012 * 300.00372 * 6 4 3 9 9 C 1.52997 * 109.47446 * 180.02562 * 6 4 3 10 10 N 1.46498 * 109.47463 * 185.00068 * 9 6 4 11 11 S 1.65602 * 120.00068 * 164.60570 * 10 9 6 12 12 O 1.42102 * 106.39776 * 307.77652 * 11 10 9 13 13 O 1.42105 * 106.39943 * 174.86317 * 11 10 9 14 14 C 1.76188 * 107.21889 * 61.32022 * 11 10 9 15 15 C 1.37647 * 120.12785 * 244.51011 * 14 11 10 16 16 C 1.38611 * 120.24696 * 180.29868 * 15 14 11 17 17 C 1.38661 * 120.50234 * 359.44509 * 16 15 14 18 18 C 1.37592 * 120.24984 * 0.55650 * 17 16 15 19 19 C 1.40699 * 120.13029 * 64.53903 * 14 11 10 20 20 C 1.41397 * 120.24396 * 359.95031 * 19 14 11 21 21 H 1.08005 * 119.99604 * 331.85946 * 20 19 14 22 22 C 1.39939 * 120.00155 * 151.85580 * 20 19 14 23 23 N 1.30824 * 120.00240 * 347.89136 * 22 20 19 24 24 Si 1.86806 * 120.00032 * 167.88526 * 22 20 19 25 25 H 1.48494 * 109.46839 * 90.00233 * 24 22 20 26 26 H 1.48500 * 109.46927 * 209.99963 * 24 22 20 27 27 H 1.48500 * 109.47050 * 330.00292 * 24 22 20 28 28 H 1.08996 * 109.47484 * 300.00319 * 1 2 3 29 29 H 1.09003 * 109.47276 * 60.00184 * 1 2 3 30 30 H 1.09002 * 109.47684 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46980 * 239.99757 * 2 1 3 32 32 H 1.09002 * 109.46536 * 119.99889 * 2 1 3 33 33 H 1.08994 * 109.47163 * 180.02562 * 8 6 4 34 34 H 1.08998 * 109.46777 * 299.99891 * 8 6 4 35 35 H 1.09003 * 109.47216 * 59.99837 * 8 6 4 36 36 H 1.09001 * 109.46819 * 64.99438 * 9 6 4 37 37 H 1.08998 * 109.46950 * 305.00087 * 9 6 4 38 38 H 0.97005 * 119.99673 * 344.60190 * 10 9 6 39 39 H 1.07993 * 119.87579 * 0.02638 * 15 14 11 40 40 H 1.07998 * 119.74695 * 179.70397 * 16 15 14 41 41 H 1.08000 * 119.87558 * 180.29924 * 17 16 15 42 42 H 1.07992 * 120.13162 * 179.74550 * 18 17 16 43 43 H 0.96998 * 120.00349 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5865 0.0015 6 6 3.9208 2.9373 0.0012 7 1 3.5846 3.4692 0.8911 8 6 3.4496 3.6847 -1.2481 9 6 5.4487 2.8573 0.0010 10 7 6.0084 4.2057 0.1220 11 16 7.6008 4.4077 0.5292 12 8 7.8128 3.6460 1.7099 13 8 7.8623 5.8021 0.4464 14 6 8.5630 3.6451 -0.7345 15 6 9.3482 2.5533 -0.4410 16 6 10.1109 1.9552 -1.4318 17 6 10.0839 2.4408 -2.7303 18 6 9.3065 3.5311 -3.0466 19 6 8.5324 4.1501 -2.0473 20 6 7.7293 5.2709 -2.3607 21 1 6.8332 5.4692 -1.7913 22 6 8.0956 6.1232 -3.4084 23 7 9.2866 6.0299 -3.9417 24 14 6.8839 7.3942 -4.0457 25 1 7.0505 8.6604 -3.2881 26 1 7.1396 7.6426 -5.4873 27 1 5.4985 6.8898 -3.8684 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 3.8666 4.6917 -1.2479 34 1 3.7858 3.1528 -2.1380 35 1 2.3611 3.7418 -1.2484 36 1 5.7887 2.4049 -0.9306 37 1 5.7807 2.2492 0.8425 38 1 5.4462 4.9802 -0.0364 39 1 9.3733 2.1639 0.5660 40 1 10.7277 1.1018 -1.1915 41 1 10.6786 1.9640 -3.4955 42 1 9.2901 3.9103 -4.0576 43 1 9.5403 6.6204 -4.6682 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601370986.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:12 Heat of formation + Delta-G solvation = -156.807290 kcal Electronic energy + Delta-G solvation = -28291.240115 eV Core-core repulsion = 24234.846202 eV Total energy + Delta-G solvation = -4056.393913 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.66586 -37.58917 -37.16618 -36.23378 -35.86763 -34.84043 -33.89387 -32.38008 -31.40976 -30.21009 -29.53995 -26.25240 -25.52206 -24.47038 -22.57900 -21.66176 -21.13586 -20.33886 -18.83067 -17.75332 -17.69642 -17.01078 -16.79983 -16.19273 -16.07905 -15.50252 -15.20063 -14.80975 -14.37452 -14.15223 -13.79488 -13.74616 -13.30840 -13.15379 -13.08192 -12.92043 -12.75643 -12.34585 -12.14296 -11.91448 -11.82398 -11.57041 -11.45415 -11.41136 -11.26840 -11.17220 -11.11391 -11.02375 -10.91747 -10.70786 -10.68894 -10.52820 -10.34629 -9.89884 -9.46389 -9.43466 -8.82067 -8.02299 -7.59401 -7.03454 -4.76225 1.49284 2.14838 2.34986 2.52169 2.74082 2.95181 2.97804 3.11672 3.75506 3.92498 4.40830 4.47122 4.65724 4.67590 4.73220 4.76639 4.85705 5.02528 5.14453 5.29531 5.42985 5.50419 5.60441 5.64328 5.68301 5.75042 5.86375 5.99799 6.07358 6.15070 6.25734 6.28520 6.33439 6.43612 6.77033 6.96148 7.09276 7.31249 7.46264 7.51999 7.66693 7.68140 7.82577 7.89504 8.28945 8.49565 8.65814 9.89624 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010902 B = 0.004031 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.612260 B = 6943.939034 C = 7804.207302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.358 6.358 4 C 0.470 3.530 5 O -0.500 6.500 6 C -0.089 4.089 7 H 0.116 0.884 8 C -0.147 4.147 9 C 0.139 3.861 10 N -1.122 6.122 11 S 2.702 3.298 12 O -0.996 6.996 13 O -0.962 6.962 14 C -0.775 4.775 15 C -0.002 4.002 16 C -0.249 4.249 17 C -0.076 4.076 18 C -0.159 4.159 19 C 0.187 3.813 20 C -0.446 4.446 21 H 0.087 0.913 22 C 0.081 3.919 23 N -0.776 5.776 24 Si 0.914 3.086 25 H -0.262 1.262 26 H -0.274 1.274 27 H -0.256 1.256 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.410 0.590 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.125 0.875 43 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.767 -5.313 1.932 15.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.275 6.275 4 C 0.312 3.688 5 O -0.387 6.387 6 C -0.109 4.109 7 H 0.134 0.866 8 C -0.204 4.204 9 C 0.012 3.988 10 N -0.880 5.880 11 S 2.799 3.201 12 O -0.987 6.987 13 O -0.953 6.953 14 C -0.871 4.871 15 C -0.022 4.022 16 C -0.270 4.270 17 C -0.095 4.095 18 C -0.179 4.179 19 C 0.183 3.817 20 C -0.475 4.475 21 H 0.105 0.895 22 C -0.141 4.141 23 N -0.399 5.399 24 Si 0.737 3.263 25 H -0.187 1.187 26 H -0.198 1.198 27 H -0.179 1.179 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.244 0.756 39 H 0.126 0.874 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.143 0.857 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.019 -5.239 2.574 15.186 hybrid contribution -0.371 0.260 -1.139 1.226 sum -14.390 -4.979 1.435 15.294 Atomic orbital electron populations 1.21800 0.92685 1.02895 1.03509 1.23029 0.95282 0.80370 1.02736 1.86494 1.24589 1.32257 1.84136 1.23604 0.80526 0.92475 0.72237 1.90706 1.60275 1.43045 1.44647 1.21232 0.96288 0.90301 1.03095 0.86592 1.21822 1.01799 1.01232 0.95589 1.20949 0.90191 0.83845 1.03803 1.55728 1.30293 1.12296 1.89633 1.01063 0.71921 0.73501 0.73588 1.93454 1.85145 1.73506 1.46566 1.93551 1.83133 1.31046 1.87554 1.29816 1.26007 1.18267 1.12964 1.20260 0.92369 0.91988 0.97557 1.20495 1.07769 1.04381 0.94315 1.20907 0.97139 0.95991 0.95434 1.21504 1.00580 0.95832 0.99980 1.16996 0.87829 0.88691 0.88209 1.19831 1.08475 1.06119 1.13043 0.89477 1.25949 0.95391 0.98154 0.94567 1.69782 1.17618 1.33246 1.19283 0.86192 0.81116 0.80609 0.78368 1.18675 1.19833 1.17929 0.91500 0.91462 0.90319 0.91145 0.91189 0.90297 0.91357 0.91242 0.90423 0.89724 0.75568 0.87388 0.88720 0.88830 0.85737 0.90146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.29 37.16 0.38 -0.58 16 2 C 0.06 0.55 6.19 37.16 0.23 0.78 16 3 O -0.36 -4.07 10.12 -39.24 -0.40 -4.46 16 4 C 0.47 6.23 7.26 36.01 0.26 6.49 16 5 O -0.50 -8.11 15.67 -18.75 -0.29 -8.40 16 6 C -0.09 -1.07 2.94 -91.77 -0.27 -1.34 16 7 H 0.12 1.16 8.14 -51.93 -0.42 0.73 16 8 C -0.15 -1.59 9.00 37.16 0.33 -1.26 16 9 C 0.14 2.16 4.91 -4.04 -0.02 2.14 16 10 N -1.12 -18.85 4.92 -10.62 -0.05 -18.90 16 11 S 2.70 58.47 4.94 -107.50 -0.53 57.94 16 12 O -1.00 -22.72 16.57 -57.17 -0.95 -23.67 16 13 O -0.96 -23.46 16.61 -57.17 -0.95 -24.41 16 14 C -0.77 -18.54 5.86 -38.87 -0.23 -18.77 16 15 C 0.00 -0.04 9.54 -39.66 -0.38 -0.42 16 16 C -0.25 -5.54 10.05 -39.29 -0.39 -5.94 16 17 C -0.08 -1.72 10.02 -39.66 -0.40 -2.11 16 18 C -0.16 -3.93 8.66 -38.87 -0.34 -4.27 16 19 C 0.19 4.73 5.55 -106.82 -0.59 4.13 16 20 C -0.45 -10.92 7.67 -37.74 -0.29 -11.21 16 21 H 0.09 1.95 5.78 -52.48 -0.30 1.65 16 22 C 0.08 1.90 5.23 -17.34 -0.09 1.81 16 23 N -0.78 -18.88 10.88 55.55 0.60 -18.27 16 24 Si 0.91 17.45 29.58 -169.99 -5.03 12.42 16 25 H -0.26 -5.09 7.11 56.52 0.40 -4.68 16 26 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 27 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.66 8.13 -51.93 -0.42 0.23 16 32 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 33 H 0.08 0.83 6.89 -51.93 -0.36 0.47 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.63 8.11 -51.93 -0.42 0.21 16 36 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.08 1.38 7.65 -51.93 -0.40 0.98 16 38 H 0.41 5.84 7.25 -34.48 -0.25 5.59 16 39 H 0.11 2.32 7.33 -52.49 -0.38 1.94 16 40 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 41 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 42 H 0.12 3.09 6.23 -52.49 -0.33 2.76 16 43 H 0.29 6.28 8.30 -40.82 -0.34 5.95 16 LS Contribution 372.53 15.07 5.61 5.61 Total: -1.00 -31.92 372.53 -9.57 -41.49 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -5.80 Total: 11.20 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: -1.79 Total: -30.54 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.55 Total: -37.17 kcal Atomic # 8 Polarization: -58.36 SS G_CDS: -2.59 Total: -60.95 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.42 kcal Atomic # 16 Polarization: 58.47 SS G_CDS: -0.53 Total: 57.94 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.92 -9.57 -41.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601370986.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.315 kcal (2) G-P(sol) polarization free energy of solvation -31.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds